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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047893 ID=TCONS_00047893|Name=TCONS_00047893|organism=Clytia hemisphaerica|type=transcript|length=741bp
atttAGACTAAATGATACATAAAATATGATCaaatgaaaatcaacaaaac
aatgCAACAATGGATGATgcagatttagaaaaacttatAGTCAAACCTGG
GAAATTGAAGCCGAAGTTTAATCGTAATGTGGCAGAGTATGAACTGGTGC
TCAATAGCGGTATCACAAAACTGAATGTTGATCCTTTTACACGTGATTGC
AATGCATCCTGGACTATCGTGGGTCGAGGAACAGAGCGTAGTCTTGCGAT
TACTGAAGGATCAATTTTTGACTTGGTGATCGAAGTGActgctgaaaatg
gttcaaccAAAAATTATACCATCTCCGTCACTTCACTAGCCTCCAACAGC
ACCTATATCTCATCCCTTGTGATCAAGGAACACAGTCTAGTCCCTGCTTT
TAAACATGGCGTCTTGAATTATGAATGTATTGTCCCATCAAATTGTCTTA
GTGTAGAATTCTCATATGTTGCACCtgataaaaacactaaaattgaAATC
AGTCCCCTGACTGATGACAAGATTGTCACAAATTATGGTAAAACGCATGC
gcaagtcaagattacgtcaccTGATGGGACAGCGACTCTTTGCTATCACG
TGACAATTCAAAGAGAGAAGCTGATATTCCCCTTACCTGTAAAAAGTAAG
GAATTTGAATGTGGAGTTTGTATGCAGTTGGCACATTGTTCTGTCAAAGT
TTCAGGATATTGGTTCTGTCAAAGTTGTCTTCAAACTATNN Run BLAST on NCBI protein sequence of TCONS_00047893-protein >TCONS_00047893-protein ID=TCONS_00047893-protein|Name=TCONS_00047893-protein|organism=Clytia hemisphaerica|type=polypeptide|length=227bp
MDDADLEKLIVKPGKLKPKFNRNVAEYELVLNSGITKLNVDPFTRDCNAS
WTIVGRGTERSLAITEGSIFDLVIEVTAENGSTKNYTISVTSLASNSTYI
SSLVIKEHSLVPAFKHGVLNYECIVPSNCLSVEFSYVAPDKNTKIEISPL
TDDKIVTNYGKTHAQVKITSPDGTATLCYHVTIQREKLIFPLPVKSKEFE
CGVCMQLAHCSVKVSGYWFCQSCLQTX Run BLAST on NCBI transcript from alignment at scaffold_139:534662..536100+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047893 ID=TCONS_00047893|Name=TCONS_00047893|organism=Clytia hemisphaerica|type=transcript|length=1439bp|location=Sequence derived from alignment at scaffold_139:534662..536100+ (Clytia hemisphaerica)
atttAGACTAAATGATACATAAAATATGATCaaatgaaaatcaacaaaac
aatgCAACAATGGATGATgcagatttagaaaaacttatAGTCAAACCTGG
GAAATTGAAGCCGAAGTTTAATCGTAATGTGGCAGAGTATGAACTGGTGC
TCAATAGCGGTATCACAAAACTGAATGTTGATCCTTTTACACGTGATTGC
AATGCATCCTGGACTATCGTGGTATGTCTCGAtctaattttcaaattatt
tcatatttactttaggcgtacaaactttcgcgaacagaaacgaatcgcga
attttggcctttttcacgaaaataaatgtctttgaaaattcttaacaggg
caattcgcgagaggtttatgctcgcgaaaaacctCGAAATCAATCAAGTT
TTTGGTGTATTATTATCCTTTAATGCCTTTAAAGTTGAAGAGCAACCgtc
tttatttttcacttttaaggcaatttttattcgaaaattctcatttttat
tcaatgatttgagaaagtttatgctcgcgaaaaacatttcttcctcgaat
tcgcgaaagtaaatttcgtaaatttcgcgatttttcgaccttgCGAAAGT
AGTTCTTGACTATGAACATTCGTGTGATATACGTTGGAAGGGAAACTCAA
ACCAAGGTTTAATTCACTGAAGATATATGTTCACTGAAAACACACAATTA
ATCTATTGTAATTGTTCTTTTTCCCCAATTTGCGACGTCATGCTGCAATC
ATGAAGATTGCCgggtttttcaaaaattgtaaagttttaactGTGATTAT
GTGAGAAATCTGCAAAGGAAAGGCCACTCATGTCAAATTTTGGAAGAGGT
TTGCTAGTGGTTATCTCCATTAACAGATCCATTTAGATTTATGTGATTTA
TCATACCTTCTCATTCCAGGGTCGAGGAACAGAGCGTAGTCTTGCGATTA
CTGAAGGATCAATTTTTGACTTGGTGATCGAAGTGActgctgaaaatggt
tcaaccAAAAATTATACCATCTCCGTCACTTCACTAGCCTCCAACAGCAC
CTATATCTCATCCCTTGTGATCAAGGAACACAGTCTAGTCCCTGCTTTTA
AACATGGCGTCTTGAATTATGAATGTATTGTCCCATCAAATTGTCTTAGT
GTAGAATTCTCATATGTTGCACCtgataaaaacactaaaattgaAATCAG
TCCCCTGACTGATGACAAGATTGTCACAAATTATGGTAAAACGCATGCgc
aagtcaagattacgtcaccTGATGGGACAGCGACTCTTTGCTATCACGTG
ACAATTCAAAGAGAGAAGCTGATATTCCCCTTACCTGTAAAAAGTAAGGA
ATTTGAATGTGGAGTTTGTATGCAGTTGGCACATTGTTCTGTCAAAGTTT
CAGGATATTGGTTCTGTCAAAGTTGTCTTCAAACTATNN Coding sequence (CDS) from alignment at scaffold_139:534662..536100+ >TCONS_00047893 ID=TCONS_00047893|Name=TCONS_00047893|organism=Clytia hemisphaerica|type=CDS|length=1362bp|location=Sequence derived from alignment at scaffold_139:534662..536100+ (Clytia hemisphaerica)
ATGGATGATgcagatttagaaaaacttatAGTCAAACCTGGGAAATTGAA
GCCGAAGTTTAATCGTAATGTGGCAGAGTATGAACTGGTGCTCAATAGCG
GTATCACAAAACTGAATGTTGATCCTTTTACACGTGATTGCAATGCATCC
TGGACTATCGTGGGTCGAGGAACAGAGCGTAGTCTTGCGATTACTGAAGG
ATCAATTTTTGACTTGGTGATCGAAGTGActgctgaaaatggttcaaccA
AAAATTATACCATCTCCGTCACTTCACTAGCCTCCAACAGCACCTATATC
TCATCCCTTGTGATCAAGGAACACAGTCTAGTCCCTGCTTTTAAACATGG
CGTCTTGAATTATGAATGTATTGTCCCATCAAATTGTCTTAGTGTAGAAT
TCTCATATGTTGCACCtgataaaaacactaaaattgaAATCAGTCCCCTG
ACTGATGACAAGATTGTCACAAATTATGGTAAAACGCATGCgcaagtcaa
gattacgtcaccTGATGGGACAGCGACTCTTTGCTATCACGTGACAATTC
AAAGAGAGAAGCTGATATTCCCCTTACCTGTAAAAAGTAAGGAATTTGAA
TGTGGAGTTTGTATGCAGTTGGCACATTGTTCTGTCAAAGTTTCAGGATA
TTGGTTCTGTCAAAGTTGTCTTCAAACTATNATGGATGATgcagatttag
aaaaacttatAGTCAAACCTGGGAAATTGAAGCCGAAGTTTAATCGTAAT
GTGGCAGAGTATGAACTGGTGCTCAATAGCGGTATCACAAAACTGAATGT
TGATCCTTTTACACGTGATTGCAATGCATCCTGGACTATCGTGGGTCGAG
GAACAGAGCGTAGTCTTGCGATTACTGAAGGATCAATTTTTGACTTGGTG
ATCGAAGTGActgctgaaaatggttcaaccAAAAATTATACCATCTCCGT
CACTTCACTAGCCTCCAACAGCACCTATATCTCATCCCTTGTGATCAAGG
AACACAGTCTAGTCCCTGCTTTTAAACATGGCGTCTTGAATTATGAATGT
ATTGTCCCATCAAATTGTCTTAGTGTAGAATTCTCATATGTTGCACCtga
taaaaacactaaaattgaAATCAGTCCCCTGACTGATGACAAGATTGTCA
CAAATTATGGTAAAACGCATGCgcaagtcaagattacgtcaccTGATGGG
ACAGCGACTCTTTGCTATCACGTGACAATTCAAAGAGAGAAGCTGATATT
CCCCTTACCTGTAAAAAGTAAGGAATTTGAATGTGGAGTTTGTATGCAGT
TGGCACATTGTTCTGTCAAAGTTTCAGGATATTGGTTCTGTCAAAGTTGT
CTTCAAACTATN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047893-exon-scaffold_139-1491911889:534662..534882 | TCONS_00047893-exon-scaffold_139-1491911889:534662..534882 | Clytia hemisphaerica | exon |
| TCONS_00047893-exon-scaffold_139-1510915933:534662..534882 | TCONS_00047893-exon-scaffold_139-1510915933:534662..534882 | Clytia hemisphaerica | exon |
| TCONS_00047893-exon-scaffold_139-1575043694:534662..534882 | TCONS_00047893-exon-scaffold_139-1575043694:534662..534882 | Clytia hemisphaerica | exon |
| TCONS_00047893-exon-scaffold_139-1491911889:535581..536100 | TCONS_00047893-exon-scaffold_139-1491911889:535581..536100 | Clytia hemisphaerica | exon |
| TCONS_00047893-exon-scaffold_139-1510915933:535581..536100 | TCONS_00047893-exon-scaffold_139-1510915933:535581..536100 | Clytia hemisphaerica | exon |
| TCONS_00047893-exon-scaffold_139-1575043694:535581..536100 | TCONS_00047893-exon-scaffold_139-1575043694:535581..536100 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_139 | supercontig | scaffold_139:534662..536100 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR025883 | Cadherin-like_b_sandwich |
Blast
The following BLAST results are available for this feature:
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