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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047849 ID=TCONS_00047849|Name=TCONS_00047849|organism=Clytia hemisphaerica|type=transcript|length=928bp
CCCCGGAAAATTCCAAATGTTGGTTCTAGGAAATAGGAATCTTCCTGTAG
AAATCAGCGTTGGAAATGTTAGGATAAAATCAACGGATTCTGTTCAGCTA
CTAGGCATAACTATTGATAACAATCTTTCTTTTGCAACCCATGTCAATTC
ACTTTGCTCTAAAGCAAGATCCAGAATCTGGAGTTTGAACAGAATtcgtt
tttatcttaattttgaCCAGCGAAAGTTAATATTTAATGCTTATATNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNAGCGAAAGTTAATATTTATTAATGCTTATATTATGTCAAT
ATTTAACTATGCACCGATAATCTGGATGTTCTGTAATAAAACCACATATG
AAGAAATCGCTAAAGTTCATAAGCGGGCCGTAAGAGCTCTACTCTGTGAT
TTCAGAAACGATTATGAAGTTTTATTGCAGAACGCCAAATATAAGACGGT
TCATGAAACTCAGCTTTGCTTCTTACTTTGTGAGGTCTACAAATCTGAGA
ACAAATTAAATCCGAAGTTCATGCAAGAAATCTACGTAacgaagaaaata
aaattcaactTCCGAAACAAAGTTTTAATGTCTATACCTAAGGCTAATTC
ACAACGTTACGGAACTCAATCTTTCTTATTTCGAGGAAGCCTGCTTTGGA
ATCAGATCCCTGAAAAAATCAAGCTTGAATCCTCTATCGAAACTTTTAAA
TCCTCACTGAAAGAAATAAGCCTCACAaatatttgtctttgtaaaatatg
tatataaaaaaaaaattttttatattatattctTCATTATATAATTAGTT
TATTCTCTACGGTTGGTATTAATTAGTATTTTATTATTACTATGGCAGAC
CAACAATaaataaattggaaaataaaaa Run BLAST on NCBI transcript from alignment at scaffold_138:37170..38097 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047849 ID=TCONS_00047849|Name=TCONS_00047849|organism=Clytia hemisphaerica|type=transcript|length=928bp|location=Sequence derived from alignment at scaffold_138:37170..38097 (Clytia hemisphaerica)
tttttattttccaatttatttATTGTTGGTCTGCCATAGTAATAATAAAA
TACTAATTAATACCAACCGTAGAGAATAAACTAATTATATAATGAagaat
ataatataaaaaattttttttttatatacatattttacaaagacaaatat
tTGTGAGGCTTATTTCTTTCAGTGAGGATTTAAAAGTTTCGATAGAGGAT
TCAAGCTTGATTTTTTCAGGGATCTGATTCCAAAGCAGGCTTCCTCGAAA
TAAGAAAGATTGAGTTCCGTAACGTTGTGAATTAGCCTTAGGTATAGACA
TTAAAACTTTGTTTCGGAagttgaattttattttcttcgtTACGTAGATT
TCTTGCATGAACTTCGGATTTAATTTGTTCTCAGATTTGTAGACCTCACA
AAGTAAGAAGCAAAGCTGAGTTTCATGAACCGTCTTATATTTGGCGTTCT
GCAATAAAACTTCATAATCGTTTCTGAAATCACAGAGTAGAGCTCTTACG
GCCCGCTTATGAACTTTAGCGATTTCTTCATATGTGGTTTTATTACAGAA
CATCCAGATTATCGGTGCATAGTTAAATATTGACATAATATAAGCATTAA
TAAATATTAACTTTCGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATAAGCATTAAATATT
AACTTTCGCTGGtcaaaattaagataaaaacgaATTCTGTTCAAACTCCA
GATTCTGGATCTTGCTTTAGAGCAAAGTGAATTGACATGGGTTGCAAAAG
AAAGATTGTTATCAATAGTTATGCCTAGTAGCTGAACAGAATCCGTTGAT
TTTATCCTAACATTTCCAACGCTGATTTCTACAGGAAGATTCCTATTTCC
TAGAACCAACATTTGGAATTTTCCGGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047849-exon-scaffold_138-1491911889:37170..38097 | TCONS_00047849-exon-scaffold_138-1491911889:37170..38097 | Clytia hemisphaerica | exon |
| TCONS_00047849-exon-scaffold_138-1510915933:37170..38097 | TCONS_00047849-exon-scaffold_138-1510915933:37170..38097 | Clytia hemisphaerica | exon |
| TCONS_00047849-exon-scaffold_138-1575043694:37170..38097 | TCONS_00047849-exon-scaffold_138-1575043694:37170..38097 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_138 | supercontig | scaffold_138:37170..38097 . |
Blast
The following BLAST results are available for this feature:
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