TCONS_00047844 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047844
Unique NameTCONS_00047844
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length333

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047844 ID=TCONS_00047844|Name=TCONS_00047844|organism=Clytia hemisphaerica|type=transcript|length=333bp
ATATGTTTCATAATTTAACTCTAAAGAAGACAAAATTGTATCAATAGAGC
CAATTTCAATATACTCAGGCTTATCAGGATccaaaatgtttctcttttta
gGATGCAAATTTGTATCTATAAATTCTTGAACAGTTTGGATCACATTATT
TCTAGCAAGCAAAATATCATGTTTTTCAGTTTCAGGTAACCCTTCAGGAA
GCGGTTCAGACAAAATAGTACGCTTGCAGAAAAGTTTTCGacgggtacaa
aatgcataaaacataatgcatattgcataatgcataatgcataatatttg
aaaaatgtcaattttagaggctataataaggag
Run BLAST on NCBI

protein sequence of TCONS_00047844-protein

>TCONS_00047844-protein ID=TCONS_00047844-protein|Name=TCONS_00047844-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
LLIIASKIDIFQILCIMHYAICIMFYAFCTRRKLFCKRTILSEPLPEGLP
ETEKHDILLARNNVIQTVQEFIDTNLHPKKRNILDPDKPEYIEIGSIDTI
LSSLELNYETY
Run BLAST on NCBI

transcript from alignment at scaffold_138:5484..5816

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047844 ID=TCONS_00047844|Name=TCONS_00047844|organism=Clytia hemisphaerica|type=transcript|length=333bp|location=Sequence derived from alignment at scaffold_138:5484..5816 (Clytia hemisphaerica)
ctccttattatagcctctaaaattgacatttttcaaatattatgcattat
gcattatgcaatatgcattatgttttatgcattttgtacccgtCGAAAAC
TTTTCTGCAAGCGTACTATTTTGTCTGAACCGCTTCCTGAAGGGTTACCT
GAAACTGAAAAACATGATATTTTGCTTGCTAGAAATAATGTGATCCAAAC
TGTTCAAGAATTTATAGATACAAATTTGCATCctaaaaagagaaacattt
tggATCCTGATAAGCCTGAGTATATTGAAATTGGCTCTATTGATACAATT
TTGTCTTCTTTAGAGTTAAATTATGAAACATAT

Coding sequence (CDS) from alignment at scaffold_138:5484..5816

>TCONS_00047844 ID=TCONS_00047844|Name=TCONS_00047844|organism=Clytia hemisphaerica|type=CDS|length=333bp|location=Sequence derived from alignment at scaffold_138:5484..5816 (Clytia hemisphaerica)
ctccttattatagcctctaaaattgacatttttcaaatattatgcattat
gcattatgcaatatgcattatgttttatgcattttgtacccgtCGAAAAC
TTTTCTGCAAGCGTACTATTTTGTCTGAACCGCTTCCTGAAGGGTTACCT
GAAACTGAAAAACATGATATTTTGCTTGCTAGAAATAATGTGATCCAAAC
TGTTCAAGAATTTATAGATACAAATTTGCATCctaaaaagagaaacattt
tggATCCTGATAAGCCTGAGTATATTGAAATTGGCTCTATTGATACAATT
TTGTCTTCTTTAGAGTTAAATTATGAAACATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030452XLOC_030452Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047844-exon-scaffold_138-1491911889:5484..5816TCONS_00047844-exon-scaffold_138-1491911889:5484..5816Clytia hemisphaericaexon
TCONS_00047844-exon-scaffold_138-1510915933:5484..5816TCONS_00047844-exon-scaffold_138-1510915933:5484..5816Clytia hemisphaericaexon
TCONS_00047844-exon-scaffold_138-1575043694:5484..5816TCONS_00047844-exon-scaffold_138-1575043694:5484..5816Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047844-proteinTCONS_00047844-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_138supercontigscaffold_138:5484..5816 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.88456	6.97814	9.24207	9.96909	10.3826	3.35376	11.5917	11.5691	4.60678	2.44608	7.51526	6.54395	5.75183	5.8227	7.20128	9.34923	7.16758	9.17384	5.57623	7.24414	38.3668	33.6039	17.0431	19.245	3.61713	6.2532	7.76102	6.2059	6.30991	8.10347
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047844 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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