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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047838 ID=TCONS_00047838|Name=TCONS_00047838|organism=Clytia hemisphaerica|type=transcript|length=706bp
AGTTTCCACCTGCAAGGACTCTATTGAGGCGAGCGATTTCATCTTCCAAC
TCAGCAATTTTGGCATTCGTTTCTTTGGCCTTATTTTCTTTGAGTGTGCA
AAAGTAACAGCTCTTTGGCTTTTGAAAATAAGGGCTTTTTGCAGCACCTT
TCATTTGGCTGGCAATTAATCTCTTTCTTGGACTCAATATTTCTGATGCG
GAAGACTTCGGAGATTCATTGTGACTTGGGAAATCAGTTTTAGCAGGTTT
GCCCTTACCATCCACTTGTGTGGACGGTGACGATTTTGCAGGTTTGTGCT
GCTTATCCAATGGCGTGGACGGTGTTTTTGGTTTTGGCAATTTAGCAGTA
GATTTATTATGTGGACTATCAAATGGCATGCTGTGTACTTCCTTCAAATT
ATCATCATCACTTTCAGAACTTACTGATTCGATTGGATTGTCGCTGCCAT
CATTATTTTCAACATGATCATGGTGGTCAACTTCTGGCATACTGTCATCA
TCAACTTCATCATGGCGATCAGCATCATGACAGCCTTCTCCATCGCTGAG
AGAGCGTATAAAATGTACAGAATTTTGCATAAAAGCTTCCTCTTTCCTCC
ACATCAGTTCTTCCTTTTCAATCTTCTCCTTTTCCTTATCAATCTTCTCC
TTTTCCTTTTCCAGCTTTTGTTGTTCTTTCTCTTTCTTCTTTGcgtcttt
ttcttt Run BLAST on NCBI transcript from alignment at scaffold_138:106580..107555+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047838 ID=TCONS_00047838|Name=TCONS_00047838|organism=Clytia hemisphaerica|type=transcript|length=976bp|location=Sequence derived from alignment at scaffold_138:106580..107555+ (Clytia hemisphaerica)
AGTTTCCACCTGCAAGGACTCTATTGAGGCGAGCGATTTCATCTTCCAAC
TCAGCAATTTTGGCATTCGTTTCTTTGGCCTTATTTTCTTTGAGTGTGCA
AAAGTAACAGCTCTTTGGCTTTTGAAAATAAGGGCTTTTTGCAGCACCTT
TCATTTGGCTGGCAATTAATCTCTTTCTTGGACTCAATATTTCTGATGCG
GAAGACTTCGGAGATTCATTGTGACTTGGGAAATCAGTTTTAGCAGGTTT
GCCCTTACCATCCACTTGTGTGGACGGTGACGATTTTGCAGGTTTGTGCT
GCTTATCTAATGGTGTGGACGGTGACGATTTTGCAGGATTGCGCTGCTTA
TCCAATGGTGTGGACGGTGACGATTTTGCAGGTTTGTGCTGCTTATGCAA
TGGTGTGGATGGTGATGATTTTGCAGGTTTGTGCTGCTTACCCAATGGTG
TGGATGGTGACGATTTTGCAGGTATGCGTTGCTTATCCAATGGTGTGGAT
GGTGAGGATTTTGCAGGTTTGCACTGGTTATCCAATGGTGTGGAAAGTGA
TGATTTTGCAGGTTTGTGCTGCTTATCCAATGGCGTGGACGGTGTTTTTG
GTTTTGGCAATTTAGCAGTAGATTTATTATGTGGACTATCAAATGGCATG
CTGTGTACTTCCTTCAAATTATCATCATCACTTTCAGAACTTACTGATTC
GATTGGATTGTCGCTGCCATCATTATTTTCAACATGATCATGGTGGTCAA
CTTCTGGCATACTGTCATCATCAACTTCATCATGGCGATCAGCATCATGA
CAGCCTTCTCCATCGCTGAGAGAGCGTATAAAATGTACAGAATTTTGCAT
AAAAGCTTCCTCTTTCCTCCACATCAGTTCTTCCTTTTCAATCTTCTCCT
TTTCCTTATCAATCTTCTCCTTTTCCTTTTCCAGCTTTTGTTGTTCTTTC
TCTTTCTTCTTTGcgtctttttcttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047838-exon-scaffold_138-1491911889:106580..106870 | TCONS_00047838-exon-scaffold_138-1491911889:106580..106870 | Clytia hemisphaerica | exon |
| TCONS_00047838-exon-scaffold_138-1510915933:106580..106870 | TCONS_00047838-exon-scaffold_138-1510915933:106580..106870 | Clytia hemisphaerica | exon |
| TCONS_00047838-exon-scaffold_138-1575043694:106580..106870 | TCONS_00047838-exon-scaffold_138-1575043694:106580..106870 | Clytia hemisphaerica | exon |
| TCONS_00047838-exon-scaffold_138-1491911889:107141..107555 | TCONS_00047838-exon-scaffold_138-1491911889:107141..107555 | Clytia hemisphaerica | exon |
| TCONS_00047838-exon-scaffold_138-1510915933:107141..107555 | TCONS_00047838-exon-scaffold_138-1510915933:107141..107555 | Clytia hemisphaerica | exon |
| TCONS_00047838-exon-scaffold_138-1575043694:107141..107555 | TCONS_00047838-exon-scaffold_138-1575043694:107141..107555 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_138 | supercontig | scaffold_138:106580..107555 + |
Blast
The following BLAST results are available for this feature:
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