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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047743 ID=TCONS_00047743|Name=TCONS_00047743|organism=Clytia hemisphaerica|type=transcript|length=2771bp
CTTAATCGTTTCATCTTTGAAACGTGTGACCTCTGCTACACAGTCGATTT
TTCATTGCCCATGCTTTTATCATTTGAAGTTAATGAATGAAAGGGACTCG
ATCAGCGCTTCCCGCCTCCAACTTTCTTCGACGCTTCTGCTGTTTATTCT
GTCAGTGAAACACTCTTTACACATCTTTAAAACCATGTCGCATAGTTCAA
TGTATGACAATTTGCTTGGACAGGGTGTGAACCCTTCCCTTGCTGCGAAA
TTGGACGAGATTCATCAACAAGGACTCTTACAAGTTGATGAATTAGATGA
CCGAGCACTTGAAGCTTTGAAGGAATTCACAGAAGAGGACGCGTTAAACG
TACTGGGACAGTTTATGAAGAGTGATTTAACACATGTACAAAACAAGAGT
GCTTTCTTATGTGGTGTCATGAAAACATACCGtgctaaaatgaaattgaa
aagtgaGGAAGCAGCTACAAACCCATCAGCATCGACATCTGTCACACCAC
AACAGCAGCAACAAACAGAAGATGGAAAGAAAGGACCCAATGAAGACAAA
GTAAAACAACTCCTTAATAGAACTGGCTATACTCTTGATATTACAACTGG
ACAGAGAAAGTATGGTGGTCCACCACCAGGATGGGAAGGACCTGCACCAG
GAACTGGTGAAAAGaaattctGTTCCCAAGTATTTATTGGAAAGATACCA
AGAGACATGTATGAAGATGAATTGGTTCCGCTGTTTGAGCCTTATGGTCA
AATCTATGATTTACGTATTATGGTTGATCCTTTTAGTGGACTGAACAAAG
GTTATGCATTTGTTACATACAGTACCAAAGAAGGAGCACAAAGTTCTGTC
AAAGCTATGGAGAACCATGAAGTAAGAGGTGGGAAAAAGCTTGGTGTTTG
TCTTTCACAAGCAAATAACAGACTCTTTGTTGGATCTATTCCTAAGACAA
AAACCAAACAAGATATCATGGAAGAATTTAAGACCAAAGTTGAGGAGTTG
ACAGATGTTATTATGTACTTTTCTGCAgaggataaaaataaaaacagagg
TTTTGCTTTCCTTGACTTTGCCACACACAAAGATGCTGCTCAGGCAagac
gaaaattgcaaagtgggCGTATCAAGGTTTTTGGACACATTACTCCAGCT
GTTGATTGGGCTGATTCCATGGATGAACCAAATGATGAAGTCATGTCTAA
GgTGAAAGTTGTCTATGTCAGACATTTATCTCCAGCCATCGACGAAAACA
AATTGAATGAACTTTTCGAACAATATGGTCCTGTTGAGAAAGTGAAAAAG
ATTAAGGATTATGCTTTCATTAACTTTGCTAACAGGGATGATGCAATGAG
AGCTATTGAGGAACTTGATAACCAAGAATTGGACGATTTAAAAATTTCAG
TACAACTTGCTAAACCTCAAGTAGATAAAACAGGTCAACGACGTGGGCAA
TCTGGGTTTGGTGCTCTTAACAAAAAGGGTGAGTCTGACAATTTTGTCCC
CAGAGGAAGAGGTGGTTTTTCTGGTCGTGGAGCTGGTGGCCCAAGAGGGC
GTGGAAGAGGAGGATTTGGAGGTGGTTTCTCACATGGAGGGAACTACTCT
CAAGGTGGTTTCTCACATGGAGGGAACTACTCTCAAGGTGGATATAGAGG
TTATGGAGATGACTCTTATGATGACTACTATGCACCACCAGCCAGACCTC
GTGGTGGTCCACCAAGCCGTGGCCCAAGTCGTGGTGGAGCAATGAGAGGG
GGAAGAGGTAGTCCTCGAGGAGGTTCAACTGGTGGTTTCCGTGGTGCTTC
CAGAGGTGGATCATCTAGAGGTGGTACTTATGGACAGCAAAGAGGAGGAA
TGAACAGAGGGCGTGGTGGCTTTGGACGAGGAGGTTCAGACTATGGATCA
GGCAGAGGTGGATCAAGAGGAGGTACTGGTGGTTATGGCTCAAGAGGACG
TGGTGCTGGGGCACCAAAAAGGAAAGCAGATTATGGTGGTGATTATGGCA
CCCCCTCTAAACGTAAGAATGAGTGGAACTCCCAACCCATTGCCCAACAA
CCCCTTGGTAACTCATCCAGCAACTATTACAATGATGACTACAGTGGCGG
TGACTGGTACACAGATTTATCTGAGCCCAGATGGCAATAAAAATCTTTTc
tcaaaaacacaagaaaaaggcATACACCAAATATTTGGatttaaaactct
aaaacaagGCATTgcttaaaaactgaaaaaccaATGAagcattgattttt
ttcaagGATAACAACGATCACTAAATTAACCTCACGAAGAGTCAAAACGA
TTCAAATCTGTACAATTGTAAATTTactgaaagatttttaaaagcTTTCT
ATGATTTGAGAGGAAACTGAGAGATTAAAACAAGGACACAAAAGCTCATA
AGTTCATACTTGTACAGCCAAAATTTgctgttttattttataaaaaaatg
taaaaactggATGGTGCTTATGTGGTGTTGTCgaaatgtaaaaatatttc
tttgcatCATTTTACAGGTTTCGCTAACAAAGAAcatatatttttagttt
ttaataaACAAAACTTTAGTTCATTCTCTTTCTTAAATAAAGTGTTGATT
TAtgaaaacctttctttttggGGTttgtaaaattcaaatttcgaatCAAA
GTCTTTGTCTCTTTTGCTTATTCAAAATAAGCTGACTCCTTTAatttaaa
tgttaaaaaaattctttacagGGATTCAAATATATtccaaatttcatgtc
gaagtgattgttttatcaaaa Run BLAST on NCBI transcript from alignment at scaffold_136:8330..22793+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047743 ID=TCONS_00047743|Name=TCONS_00047743|organism=Clytia hemisphaerica|type=transcript|length=14464bp|location=Sequence derived from alignment at scaffold_136:8330..22793+ (Clytia hemisphaerica)
CTTAATCGTTTCATCTTTGAAACGTGTGACCTCTGCTACACAGTCGATTT
TTCATTGCCCATGCTTTTATCATTTGAAGTTAATGAATGAAAGGGACTCG
ATCAGCGCTTCCCGCCTCCAACTTTCTTCGACGCTTCTGCTGTTTATTCT
GTCAGTGAAACACTCTTTACACATCTTTAAAACCATGTCGCATAGTTCAA
TGTATGACAATTTGCTTGGACAGGGTGTGAACCCTTCCCTTGCTGCGAAA
TTGGACGAGATTCATCAACAAGGACTCTTACAAGTTGATGAATTAGATGA
CCGAGCACTTGAAGCTTTGAAGGAATTCACAGAAGAGGACGCGTTAAACG
TACTGGGACAGTTTATGAAGAGTGATTTAACACATGTACAAAACAAGAGT
GCTTTCTTATGTGGTGTCATGAAAACATACCGtgctaaaatgaaattgaa
aagtgaGGAAGCAGCTACAAACCCATCAGCATCGACATCTGTCACACCAC
AACAGCAGCAACAAACAGAAGATGGAAAGAAAGGACCCAATGAAGACAAA
GTAAAACAACTCCTTAATAGAACTGGCTATACTCTTGATATTACAACTGG
ACAGAGAAAGTATGGTGGTCCACCACCAGGATGGGAAGGACCTGCACCAG
GAACTGGTGAAAAGGTAATCCCTTGTTGTCTCTTTCCtgacttttttgtt
tatttaattttcgagtagtttgagtaaagaagaCAAGTTATATAAATTTC
ATGCTCAAAGTCTAAGTTTCAACAGGATTACAATGGGCTATTACAAATTG
GTTGAaacaatctaaccttactccagacccgatcaatcgaacttgtcgaa
ccaatcgcaCAATCGAACTCCATCAAACGAATAAATTtcaatacacctta
tcggaaattccacctcctcgcgttgttgctacgcaacactttttgggagg
taaacaaagctCGATACTGcgattttcaagcaaaaagccttacaaaacac
ccaaaatattgatgccaaaagagcctccaaatcaactgaagaaccaccga
agttcttgtttttctctttcttataGCTTCTGCtatagcatcttgaaagc
tgtgttttgtttgtttttttcaaattcagtgtatttttaggaacataTAA
ACAAGCCAGATATAAGCAAATGAGTTCTTGTTTTACGCGGGAACTTTTAG
CGCTACTTGCACTGCCATTGGTCccatttatgtttacctcccaatttcAA
CGGATCCATCTTAGCGCGattgtttttgtggaatttccgatagGCCGAGG
GAATTGACATACCAGATTAGCGTCCGCCCGCGTGTGTTTGGTGTAGCCGc
gtaaaaatttcattattttaagaaaatttcattatttcacaGACAAACCT
GAAAATTGAACTCCATCTCCTACAGCTATCATCATTGTCACCTAAAGTGC
GAAAAATAACAATTTCCTGCGCGTGCGTCATAGCCTCTGTTCGATCGGGA
CTTTAGTCCCCGTATACATCACACTACAAAAAATTAAACCCGCTCTACac
taaaagttttctttcaaatcgaACGATCGCGTAAGTCTTTAATTTTACCG
CCGCGGCCTCTGGAATCGATTCTTTTTCCGGTCACGGATACTTCAATTTC
TGTAACTGCACATGCGCAATACATACCCGAGAAGATGTTTTCAAAAGGTT
GATCGTCTGTGGTGTGGTGGTGTTTGTACAGTGTGGATTTGTTGCTGTAG
AGCCTGTAAtggaaaaataatgaataatgaaaaatgaaaatatgccGCAT
CTAGTTTCAGGCATGCTGGTGACGCTAAACTGGTATGTTAATTCCCTCGG
CCTATAGAGGACAAagtcaacatttttcaaagaaaatcattAGATTGGAA
AATATTACTTTTTACGGTCTTGCTTTTCAACTGTTTCTCCTAAGTCTaat
aaaaatgtcataaaaagaATTTTGCCCTAACTNAggtgtatttaaaaaat
ttattgaacctaatcgaacactcacaatttttgaagcaatcaatagcagt
tcgattagtttgtcAGTAAAAACTTTGATTAGTTCCAGGATATtaggcta
ttccatttttaaaccatacacgttttttttttttataaggaaccttaact
ttgctctgagcctggagttccttatttttacagagaatttcagcctcaaa
gaacttatcgagttccttatttacatagctgctaagtttggattcgcaaa
aTATTTAACTTCTTTATAATAGTATAACTtcttctcagcctgagcagttc
cttaacaattccttattttttggaccattttcagcctcgggttccttata
aacgtgttccttatataaaaaaaaacgtgtatatacaggggtattgacaa
acGTTTCCAGGAggtctgagccttgattttccaaggggtttttggtcatt
ttcagattttccaagggggttattaaaGGTTCCAGgtttttccagggggt
tctcCCCTCCTACCCTCCTAaacctttttcacaaaatttcactttctaGG
GGTGTTNTAAAGGTTCCAGGTGTTTCCAGGGGGTTCTCCCCTCCTAaacc
tttttcacaaaatttcactttctaGGGGTGTTGACTCCtataatttccag
gggatagtttgttatcaaagatttccaggggggttagtgaaaaaagttcg
tcaatacttctgtacaatttttttttggaatagcccattaaATCCTCATa
atatcttccctcgcttgcaaaaacttaaTCCTGGCATGCTATTTcaacag
ttcccggacttaaccTCCCGGTcctcgacaaaaaactttcaaatttttta
tcggcattaggccaataagggggtggggggtccaactacataccgataaa
aaaacaaatattgggacaaaaatcttttcagccaatttctttctgatttc
gtccacaaactccactgaaagcatacaatttcacttgctttcaccttcGC
GCACAAATTAAcaactttaaaagtacagttttgaattagctatgataaaa
aaacccttttttcattggccagtGTGCTgccatttttttcgaaatgttGT
GATTTCATCGCgtctttttaactttcgttttgattaacaatatcaatgcg
ggtatgaacaaactcaatgttggtgcaaATACATAGACTAAAATTCAATG
ATGACGGGTGGAAAGGCAAGAATAATGCAATGGTGGacgtgattttggaa
aaaattgtgttttccaagatgtaaaagttggtttcgaaaaattttggccg
ataagagcaagggggagggggtctcaAGCTTATcagcccaatgccgataa
aaaattcgaaagatgTTTGTCAAAGACCCCTTACAGTCAATACCTTTAGC
CAAATTAAAAAAGTCCTGATTAGGAATATGAAGCAAATACCTAGTGTTAA
ATAAGTATTTTCCAACCTAGTGATTGCCGATCCTTGCTTGACCGGATGCA
ATATAAACCAATATAATAAGTCTTCACCAACAAAAATGAACACAATCCAA
TTTGAACCAACACAAGAATCAATTTGAACGATGATCAATatcaattgatc
caaataccaTTTACAGAATACACATAAAGCCCCTCTGGCTATCATATATT
ATTGTTTATCACTTTGTATTATTCATCTATAATATAAGGTAGAGATTAAC
ATctagattttctccaaaaatagaaaaaatcgcaTGTTAAAAAGCACTTC
ATAAGATTTAGGTGGGAAAGAAAGATTGAGCTCTTGACTTGCTCGGGGGA
CCAAGCTACAATTCCACCATCCgcgaatgaaatttttcaattttttgcac
agttatCATATTTGGTATACTGAATCTTTTGGTCATACTTGGAATTTGCA
AATGTAGCTCGTTTCAGAGTTAttaaatttttagatatttcttcctaatt
aggaataggATTTCTAATTAGTAATCCtggtaaaagtaagaaaaatgttc
ctaatttggctaaaggtaTTGAccgggggggggtcaacatttataatacc
aacccatagcccaaaaacctgacttttgagCTAAGacaacaccaccaccc
caaaattagtctacacaatagacagatccaggattttaggccttactctt
ggtctataggcactgctataggtggccactagtgacccccaccgggaatt
gtttattaataggtttaaagataatagacaacattcacaaaNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCCCATTTTT
GTAACTTGTCAAGGTCGTTTTGGAGAATAGTGGTGTCGTTTAGGCTACGA
ATGATACGGTGTAGGAGTGAGTCGTCAGCAAATAAAGCAAATGTGGATTC
GGTTGTGAGTGGCAAATCGTTAATATATATGAGAAAGAGTAATGGGCCCA
ATACAGATCCCTGTGGTACTCCTGATTCAACTTTTGATTGTGGGGACGTA
GATCCTCGGACAACAACACATTGGGTTCTGTTGGATAGAAAGTCAGTGAT
CCACGATAATATCTCATTTCGAATGCCGTAGTGATGTAATTTGATGAGTA
GCTTTCTGCGGTTAACTTTATCGAAAGCCTTGCTAAAGTCTAGAAGGACT
GAGTCAATCTGTTCACTGTTGTTAAGGGCTTTTGCAAATTTATCAACTGT
TGCTAGTAATTGTGTTTCGCATGAGCGTTGTTTGCGAAAACCGTGTTGAG
CATCACTAAGTGTACCGTCTTTCTCGAGATGGGTCATGATNGAAACACTG
CAATAATGTTGATTGAGAAGTTGGGCGATTTCACCATCATCTGAGTGGGT
TTGTCCATTTTTGTCAATGAGTGGCGCAACTCCGGCAATATCATTTCGCT
TAGATTtgatatatttaaaaagtttctttttatttcctgTTACTGTCTCT
TTAACGAAATTGTTTTTTGTGGTGTTACAGATCTTTCTATAGTGTTTTGC
TAAGGTCAAGTATTGCTTTCTTGCGTGTTGTAAAATTGACCATTTGAAGA
CCTGAAGTTTCAAAGACTTCAAGGTATTGTTCGTTTAGTTCTTTCGAATA
CTGATTGGAAGTGATACTGTTGGTGTTCCAatctataggcggccactagt
gacccccaccgggaattgtttattaataggtttaaagataatagacaaca
ttcacaaaagatgtttatcaatagagattttaaataaaagaatgtttaaa
acacagctgattggcttaggtttcgaaactctattgtttcattaaaacct
cagtgcgcatgcgatttatctggaaaatttcaatattcaaaacaagagca
gtgctcatagcccgaagagtaggagttttacgctcaaaacgaaggaagat
atgacataGCCTACCCCAAAATTggtcgataccaacttgaaaatcataat
tttcagggAAAgggttggtatcgataccaacatgactttttggatttgac
aaaatatcatgggacccaccccctaatttaccaataccaatctgacaaat
ttaaGCTTAAAGCTGTTTAgaggggacccaccccctcccacacaaacagc
CCTTGTAAtaagagaattttcaaaaaactcatttttgtaatactctttct
tcaacacaacacagaaaatgtcatatgctaaaataaaaaatgactgaaaa
ctgacaatataataaaaacaaacccaatgaagctagcaaaatcaatctga
atcaatattatctgaatataattgattATTTTTCTTGCTAAAAAGAAGAA
GTATTGAATTTTCGCTCAAAGACCTCACAGATTCCAGACAGTTTATTAGT
TTAAATTATGGACTTGCACATTTTGCAAACCAAATTAGCTTAAAATGGCT
TGTTTATTCGATTTGAatactttcgaatgttttaaaatttcgaatatttt
ttcgaaaattcgaatGTCTTTTgcccatttgaaattcgaattttcacaaa
aagaaaaataaggttTCTTTACTCTGGTTTGTTTGATACTTACACTACAT
CCTGCTTGATCAAGTTTGCTTTGGTGTTAGAGTTTTACCTTAATACAAAA
ACGACCAAGATAATAAAGAAATGCAGACTGTTTAATTTTTTCAGGGTATt
agctataagggcaaaaattaggaaagttttgctgtcattttgatatggat
atcaactttctgaatcatcttatttaaaaaaaggggtacccaccccctat
tttggtatcaatacaaACCAtgaggataactcttttttttctaaaaaaag
ggggacccacccccatcaataccaacttgacttttcagacttttaaagga
aaaaatgacaccaccacccggctatggctggtatctggatgttgaccccc
ctGTATTGACATTTGTTGTAttcggatatttgtctatccagAATAAAGTG
TTTCGATTTCGCGCGCCGAGtagtggcggaatactacgccccaacaaacc
aCCTCTGGCGCTAAAGGAtgcaggaaaagtgtgtaacccgttatcggaag
taatttcccaaTTTACGTTatgaatttggctttgaaaagaggCTAATATT
GGTTTAtcaaactgatcgaaccgatcaaacttaatcgaacactcacaatc
tttaaaaaatcttagagctcgattaaattttttaatcaaactttaatcat
tCAATGGagttcaattagtttgattgtttccacaagttcgattgatcagg
TCTGGCTCACTCGAACacatcgaatattacccaggaatcggcctttcgat
tgagattcaattgactatcgacaatcgaattgcaattattcgattgcgtt
caattgattggCGTTtaattgacaccgtctggcccTCTGgcagtctaagc
ttaaactcctatatcaggaatagaaactaggctagtcttacctctttcaG
TCAcagaaatccttgcatttgcatgGGGTGTGCCTTTGCAACGgtttcaa
caattttttccaacccctgCAAGTGAGCTAGAACGTGTAAGGCAAAATGC
ACGAAAATTATCAAATCtcaactttaaaatgaaaatgacataAAACGAAG
ACGaatggcattttcattttttttctttagaagattctttagccttttta
gaaaatttttgtctacaggttaaaatttttatctgtgcatttttttataa
tcaagtgaaacatttttccactcTGTGTAAATGGAACGGGTTGCAGTGAT
CGAGTGTAATTGCACGGGGTTTTTTCGTCACTTTGGTTTTCAACCCATTG
CATTTGCCGCATGTCGAACCCTGTAGTTTTTCTAGAAACCGACCAGGTGA
AAGATAATAATTTTTTGACCCgaccgcagactatgggttaaTCTATATgg
tcaggggggggggcacgcagttactctacaagacatgatgtgtagtaagt
gctttttcaacactttttttcaggaccaccaccctttgcagttactacac
cttggtagtaactgttttcagaaaagatttccaggtaccacccctgtttt
tgagtgatatcatcaaaaacatgctcgaaattaccctaaattgcaattat
ttttcaacctaaagccatttttgtgctagattttcttttaatttacttgg
ttaacagctgttgagaacattttgatgataattagggaaagcataatttc
aaagttgggtctgagaaaaatttcaaattttttttgtccatttataacaa
aaatattttttttaacaaagaattttttcacaaaaaacatcattttttgt
gaaaaatttttaaagttctttctccttttacaattgatgaaCTTTCAAAt
tgtgttaaacttttttcaaataataaatcttTAGGCGTTGATAATATTCC
AACTCTGCTTTGGAAAGATCCCGTCTTTATGGAAATGCTTctcgattttt
gtaaaaaagaattgaaatataagcacttactacaccaaaagtgctagttt
tagtgtttggtaccacccccaaacagcagttactacactgtgtagtaact
gttttcataacttctgaatacagtaccaccacggtagtaagtgtcatact
gtcttgtagtaactgcgtgcccacCCCCCTgatatggttcatcataaaga
aaattaagttgaccgttcaagctatcaaacgtcgtttggtttgATGTTCC
CGCGTGTCaatcaagttttgtttgttagtagttgatacattaatATTTAG
GGCTTCATACTGTTtctacataaaagttatctttttaaagttctatttca
atgatctgaagttatcaaaaaaagcaaaaaaagataatttttcaggccgg
ccgcatgaaagctttttttcttcatccacattccggaaacactacatttt
tttattttgcctaaacataattttttttgctgcttttttatttgatcata
CTGCCATAGCTTAACCTGCATTctcttttttcagaaattctGTTCCCAAG
TATTTATTGGAAAGATACCAAGAGACATGTATGAAGATGAATTGGTTCCG
CTGTTTGAGCCTTATGGTCAAATCTATGATTTACGTATTATGGTTGATCC
TTTTAGTGGACTGAACAAAGGTTATGCATTTGTTACATACAGTACCAAAG
AAGGAGCACAAAGTTCTGTCAAAGCTATGGAGAACCATGAAGTAAGAGGT
GGGAAAAAGCTTGGTGTTTGTCTTTCACAAGCAAATAACAGACTCTTTGT
TGGATCTATTCCTAAGACAAAAACCAAACAAGATATCATGGAAGAATTTA
AGACCAAAGTTGAGGAGTTGACAGATGTTATTATGTACTTTTCTGCAgag
gataaaaataaaaacagaggTTTTGCTTTCCTTGACTTTGCCACACACAA
AGATGCTGCTCAGGCAagacgaaaattgcaaagtgggCGTATCAAGGTTT
TTGGACACATTACTCCAGCTGTTGATTGGGCTGATTCCATGGATGAACCA
AATGATGAAGTCATGTCTAAGGTAAGAGATTAGATCATTTTTAGTAATTA
TCTCCATTTGGTGTTGCAGCCTCATTGAATTATTCAATTTGATAGCTTTC
CTTGCTTTAACTTGGTTGTAATCAGGCTAATTATTGTATAATGTATAAAT
AAGGCTGGCTTTTGATAGCTCAAGGTGTAAAATGACAGCGAACCACTCAA
ATTTCTTCCCCATTATACTCCTAATCATCATTTGAATTGCTTCCATTTTC
CATTTTTGTCACAAAGAACACAATTACAATACAAGTGCTTTATTTATGCC
ctgaagttaaaaaaattaatatttaggGTTTACACCGCCAAAGTCAgcaa
tattttattaaaaaatcccAAACTTATTGATGTGAATAACCAAGAATATT
GaagttttgcggaatttaattttgcgatttAAAGGGCCAAATTTGCATTA
ATTAATTCTGCATTAGTTAATTTTGCATTTATTTGTTCCCTCAAGGCAAT
ACTGATCTGCTATTTTAGTAGTATAGTTCAGTTTATACATAGTTTGCGCC
CCCTTTTTTTAATGGGGCGGGATGCTAGATTTTTGGGGGGCCTTTGAAGG
GGTTACCAAAATGTGCCTAAATTTTTTGGGtgggaatgtaggggggggtc
aaaaaagaaaaggggGTTTGGAAAATCTGGTCAACTCAATAATTTACATA
TAGTCGAAGTCcgttttaaagtaaaattatGTACCACCAAAATACAAAAG
TGTATAATGttaatcaaaatattatttatatGTAATGGTTATCGACAAAA
AgagaacgagaaaaatataACCAATATTGTACGAGTGAAAGTctttgtgt
tttgtttataCTTCCTGTATTTTGGTGAAATTAACATCAAAACATGCGAA
ATTGATTAGAATTTTCATTAAACAGTACAAAACACTCTTAATTGACCTGA
CttgacaatttttttgtgatttgagAGGAAAACGAAAACATTTCTGGGAA
TAAATTTTGGTAAAAGATACGACAAGAAAGTTCAAATTATGACCTCTCAc
ttaccagaccccttttttgAAAACGCtgtcttgtatttgtacggtacaat
atgaaGTACAGGATTTATGTAAGCATTttaagccaatcagattgcttata
tttttcatgttgatgataaATAATGTTATATCTTGAAATTGTTGCATTTT
GGACTCTTTGAtcattttttttggggggggggggcaagattgcattacaa
aagggggatgaaataaacctagggggttcatacccctctgcaaactctGT
TATAgcaatcatttttcatttctttttaggTGAAAGTTGTCTATGTCAGA
CATTTATCTCCAGCCATCGACGAAAACAAATTGAATGAACTTTTCGAACA
ATATGGTCCTGTTGAGAAAGTGAAAAAGATTAAGGATTATGCTTTCATTA
ACTTTGCTAACAGGGATGATGCAATGAGAGCTATTGAGGAACTTGATAAC
CAAGAATTGGACGATTTAAAAATTTCAGTACAACTTGCTAAACCTCAAGT
AGATAAAACAGGTCAACGACGTGGGCAATCTGGGTTTGGTGCTCTTAACA
AAAAGGGTGAGTCTGACAATTTTGTCCCCAGAGGAAGAGGTGGTTTTTCT
GGTCGTGGAGCTGGTGGCCCAAGAGGGCGTGGAAGAGGAGGATTTGGAGG
TGGTTTCTCACATGGAGGGAACTACTCTCAAGGTGGATATAGAGGTTATG
GAGATGACTCTTATGATGACTACTATGCACCACCAGCCAGACCTCGTGGT
GGTCCACCAAGCCGTGGCCCAAGTCGTGGTGGAGCAATGAGAGGGGGAAG
AGGTAGTCCTCGAGGAGGTTCAACTGGTGGTTTCCGTGGTGCTTCCAGAG
GTGGATCATCTAGAGGTGGTACTTATGGACAGCAAAGAGGAGGAATGAAC
AGAGGGCGTGGTGGCTTTGGACGAGGAGGTTCAGACTATGGATCAGGCAG
AGGTGGATCAAGAGGAGGTACTGGTGGTTATGGCTCAAGAGGACGTGGTG
CTGGGGCACCAAAAAGGAAAGCAGATTATGGTGGTGATTATGGCACCCCC
TCTAAACGTAAGAATGAGTGGAACTCCCAACCCATTGCCCAACAACCCCT
TGGTAACTCATCCAGCAACTATTACAATGATGACTACAGTGGCGGTGACT
GGTACACAGATTTATCTGAGCCCAGATGGCAATAAAAATCTTTTctcaaa
aacacaagaaaaaggcATACACCAAATATTTGGatttaaaactctaaaac
aagGCATTGctttaaaactgaaaaaccAATGAagcattgatttttttcaa
gGATAACAACGATCACTAAATTAACCTCACGAAGAGTCAAAACGATTCAA
ATCTGTACAATTGTAAATTTactgaaagatttttaaaagcTTTCTATGAT
TTGAGAGGAAACTGAGAGATTAAAACAAGGACACAAAAGCTCATAAGTTC
ATACTTGTACAGCCAAAATTTgctgttttattttataaaaaaatgtaaaa
actggATGGTGCTTATGTGGTGTTGTCgaaatgtaaaaatatttctttgc
atCATTTTACAGGTTTCGCTAACAAAGAAcatatatttttagtttttaat
aaACAAAACTTTAGTTCATTCTCTTTCTTAAATAAAGTGTTGATTTAtga
aaacctttctttttggGGTttgtaaaattcaaatttcgaatCAAAGTCTT
TGTCTCTTTTGCTTATTCAAAATAAGCTGACTCCTTTAatttaaatgtta
aaaaaattctttacagGGATTCAAATATATtccaaatttcatgtcgaagt
gattgttttatcaaaaaaaaggaAACTAGAAAAGGAGATTGTTTTTTACT
ATTATGTGTCCCTCTGAATTTTATTTATCTTTAAAAATGGTGACTTAAAA
TTGAGAATACCTTTNAAGTGAAAAAGATTAAGGATTATGCTTTCATTAAC
TTTGCTAACAGGGATGATGCAATGAGAGCTATTGAGGAACTTGATAACCA
AGAATTGGACGATTTAAAAATTTCAGTACAACTTGCTAAACCTCAAGTAG
ATAAAACAGGTCAACGACGTGGGCAATCTGGGTTTGGTGCTCTTAACAAA
AAGGGTGAGTCTGACAATTTTGTCCCCAGAGGAAGAGGTGGTTTTTCTGG
TCGTGGAGCTGGTGGCCCAAGAGGGCGTGGAAGAGGAGGATTTGGAGGTG
GTTTCTCACATGGAGGGAACTACTCTCAAGGTGGATATAGAGGTTATGGA
GATGACTCTTATGATGACTACTATGCACCACCAGCCAGACCTCGTGGTGG
TCCACCAAGCCGTGGCCCAAGTCGTGGTGGAGCAATGAGAGGGGGAAGAG
GTAGTCCTCGAGGAGGTTCAACTGGTGGTTTCCGTGGTGCTTCCAGAGGT
GGATCATCTAGAGGTGGTACTTATGGACAGCAAAGAGGAGGAATGAACAG
AGGGCGTGGTGGCTTTGGACGAGGAGGTTCAGACTATGGATCAGGCAGAG
GTGGATCAAGAGGAGGTACTGGTGGTTATGGCTCAAGAGGACGTGGTGCT
GGGGCACCAAAAAGGAAAGCAGATTATGGTGGTGATTATGGCACCCCCTC
TAAACGTAAGAATGAGTGGAACTCCCAACCCATTGCCCAACAACCCCTTG
GTAACTCATCCAGCAACTATTACAATGATGACTACAGTGGCGGTGACTGG
TACACAGATTTATCTGAGCCCAGATGGCAATAAAAATCTTTTctcaaaaa
cacaagaaaaaggcATACACCAAATATTTGGatttaaaactctaaaacaa
gGCATTgcttaaaaactgaaaaaccaATGAagcattgatttttttcaagG
ATAACAACGATCACTAAATTAACCTCACGAAGAGTCAAAACGATTCAAAT
CTGTACAATTGTAAATTTactgaaagatttttaaaagcTTTCTATGATTT
GAGAGGAAACTGAGAGATTAAAACAAGGACACAAAAGCTCATAAGTTCAT
ACTTGTACAGCCAAAATTTgctgttttattttataaaaaaatgtaaaaac
tggATGGTGCTTATGTGGTGTTGTCgaaatgtaaaaatatttctttgcat
CATTTTACAGGTTTCGCTAACAAAGAAcatatatttttagtttttaataa
ACAAAACTTTAGTTCATTCTCTTTCTTAAATAAAGTGTTGATTTAtgaaa
acctttctttttggGGTttgtaaaattcaaatttcgaatCAAAGTCTTTG
TCTCTTTTGCTTATTCAAAATAAGCTGACTCCTTTAatttaaatgttaaa
aaaattctttacagGGATTCAAATATATtccaaatttcatgtcgaagtga
ttgttttatcaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047743-exon-scaffold_136-1491911889:8330..8993 | TCONS_00047743-exon-scaffold_136-1491911889:8330..8993 | Clytia hemisphaerica | exon |
| TCONS_00047743-exon-scaffold_136-1510915933:8330..8993 | TCONS_00047743-exon-scaffold_136-1510915933:8330..8993 | Clytia hemisphaerica | exon |
| TCONS_00047743-exon-scaffold_136-1575043694:8330..8993 | TCONS_00047743-exon-scaffold_136-1575043694:8330..8993 | Clytia hemisphaerica | exon |
| TCONS_00047743-exon-scaffold_136-1491911889:17864..18400 | TCONS_00047743-exon-scaffold_136-1491911889:17864..18400 | Clytia hemisphaerica | exon |
| TCONS_00047743-exon-scaffold_136-1510915933:17864..18400 | TCONS_00047743-exon-scaffold_136-1510915933:17864..18400 | Clytia hemisphaerica | exon |
| TCONS_00047743-exon-scaffold_136-1575043694:17864..18400 | TCONS_00047743-exon-scaffold_136-1575043694:17864..18400 | Clytia hemisphaerica | exon |
| TCONS_00047743-exon-scaffold_136-1491911889:19709..20111 | TCONS_00047743-exon-scaffold_136-1491911889:19709..20111 | Clytia hemisphaerica | exon |
| TCONS_00047743-exon-scaffold_136-1510915933:19709..20111 | TCONS_00047743-exon-scaffold_136-1510915933:19709..20111 | Clytia hemisphaerica | exon |
| TCONS_00047743-exon-scaffold_136-1575043694:19709..20111 | TCONS_00047743-exon-scaffold_136-1575043694:19709..20111 | Clytia hemisphaerica | exon |
| TCONS_00047743-exon-scaffold_136-1491911889:21627..22793 | TCONS_00047743-exon-scaffold_136-1491911889:21627..22793 | Clytia hemisphaerica | exon |
| TCONS_00047743-exon-scaffold_136-1510915933:21627..22793 | TCONS_00047743-exon-scaffold_136-1510915933:21627..22793 | Clytia hemisphaerica | exon |
| TCONS_00047743-exon-scaffold_136-1575043694:21627..22793 | TCONS_00047743-exon-scaffold_136-1575043694:21627..22793 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_136 | supercontig | scaffold_136:8330..22793 + |
Blast
BLAST of TCONS_00047743 vs. Swiss-Prot (Human)
Match: HNRPQ (Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens GN=SYNCRIP PE=1 SV=2) HSP 1 Score: 437.573 bits (1124), Expect = 5.331e-141 Identity = 224/420 (53.33%), Postives = 298/420 (70.95%), Query Frame = 2
Query: 191 HSSMYDNLLGQGVNPSLAAKLDEIHQQGLLQVDELDDRALEALKEFTEEDALNVLGQFMKSDLTHVQNKSAFLCGVMKTYRAKMKLKSEEAATNPSASTSVTPXXXXXTEDGKKGPNEDKVKQLLNRTGYTLDITTGQRKYXXXXXXXXXXXXXXXEKKFCSQVFIGKIPRDMYEDELVPLFEPYGQIYDLRIMVDPFSGLNKGYAFVTYSTKEGAQSSVKAMENHEVRGGKKLGVCLSQANNRLFVGSIPKTKTKQDIMEEFKTKVEELTDVIMYFSAEDKNKNRGFAFLDFATHKDAAQARRKLQSGRIKVFGHITPAVDWADSMDEPNDEVMSKVKVVYVRHLSPAIDENKLNELFEQYGPVEKVKKIKDYAFINFANRDDAMRAIEELDNQELDDLKISVQLAKPQVDKTGQRRGQ 1450
HS + LL G+ +A KLDEI+ GL+ +LD+RA+EALKEF E+ AL VL QF SDL+HVQNKSAFLCGVMKTYR + K ++ A D KGP+E K+K LL RTGYTLD+TTGQRKYGGPPP + +++F+GKIPRD++EDELVPLFE G I+DLR+M+DP +GLN+GYAFVT+ TKE AQ +VK NHE+R GK +GVC+S ANNRLFVGSIPK+KTK+ I+EEF E LTDVI+Y +DK KNRGF FL++ HK AAQARR+L SG++KV+G++ V+WAD +++P+ EVM+KVKV++VR+L+ + E L + F Q+G +E+VKK+KDYAFI+F RD A++A+EE++ ++L+ I + AKP K +R+ Q
Sbjct: 23 HSENFQTLLDAGLPQKVAEKLDEIYVAGLVAHSDLDERAIEALKEFNEDGALAVLQQFKDSDLSHVQNKSAFLCGVMKTYRQREKQGTKVA-------------------DSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQ---QPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG-TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQ 419
The following BLAST results are available for this feature:
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