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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047741 ID=TCONS_00047741|Name=TCONS_00047741|organism=Clytia hemisphaerica|type=transcript|length=2805bp
TAAAGTACTTAATCGTTTCATCTTTGAAACGTGTGACCTCTGCTACACAG
TCGATTTTTCATTGCCCATGCTTTTATCATTTGAAGTTAATGAATGAAAG
GGACTCGATCAGCGCTTCCCGCCTCCAACTTTCTTCGACGCTTCTGCTGT
TTATTCTGTCAGTGAAACACTCTTTACACATCTTTAAAACCATGTCGCAT
AGTTCAATGTATGACAATTTGCTTGGACAGGGTGTGAACCCTTCCCTTGC
TGCGAAATTGGACGAGATTCATCAACAAGGACTCTTACAAGTTGATGAAT
TAGATGACCGAGCACTTGAAGCTTTGAAGGAATTCACAGAAGAGGACGCG
TTAAACGTACTGGGACAGTTTATGAAGAGTGATTTAACACATGTACAAAA
CAAGAGTGCTTTCTTATGTGGTGTCATGAAAACATACCGtgctaaaatga
aattgaaaagtgaGGAAGCAGCTACAAACCCATCAGCATCGACATCTGTC
ACACCACAACAGCAGCAACAAACAGAAGATGGAAAGAAAGGACCCAATGA
AGACAAAGTAAAACAACTCCTTAATAGAACTGGCTATACTCTTGATATTA
CAACTGGACAGAGAAAGTATGGTGGTCCACCACCAGGATGGGAAGGACCT
GCACCAGGAACTGGTGAAAAGaaattctGTTCCCAAGTATTTATTGGAAA
GATACCAAGAGACATGTATGAAGATGAATTGGTTCCGCTGTTTGAGCCTT
ATGGTCAAATCTATGATTTACGTATTATGGTTGATCCTTTTAGTGGACTG
AACAAAGGTTATGCATTTGTTACATACAGTACCAAAGAAGGAGCACAAAG
TTCTGTCAAAGCTATGGAGAACCATGAAGTAAGAGGTGGGAAAAAGCTTG
GTGTTTGTCTTTCACAAGCAAATAACAGACTCTTTGTTGGATCTATTCCT
AAGACAAAAACCAAACAAGATATCATGGAAGAATTTAAGACCAAAGTTGA
GGAGTTGACAGATGTTATTATGTACTTTTCTGCAgaggataaaaataaaa
acagaggTTTTGCTTTCCTTGACTTTGCCACACACAAAGATGCTGCTCAG
GCAagacgaaaattgcaaagtgggCGTATCAAGGTTTTTGGACACATTAC
TCCAGCTGTTGATTGGGCTGATTCCATGGATGAACCAAATGATGAAGTCA
TGTCTAAGgTGAAAGTTGTCTATGTCAGACATTTATCTCCAGCCATCGAC
GAAAACAAATTGAATGAACTTTTCGAACAATATGGTCCTGTTGAGAAAGT
GAAAAAGATTAAGGATTATGCTTTCATTAACTTTGCTAACAGGGATGATG
CAATGAGAGCTATTGAGGAACTTGATAACCAAGAATTGGACGATTTAAAA
ATTTCAGTACAACTTGCTAAACCTCAAGTAGATAAAACAGGTCAACGACG
TGGGCAATCTGGGTTTGGTGCTCTTAACAAAAAGGGTGAGTCTGACAATT
TTGTCCCCAGAGGAAGAGGTGGTTTTTCTGGTCGTGGAGCTGGTGGCCCA
AGAGGGCGTGGAAGAGGAGGATTTGGAGGTGGTTTTTCTGGTCGTGGAGC
TGGTGGCCCAAGAGGGCGTGGAAGAGGAGGATTTGGAGGTGGTTTCTCAC
ATGGAGGGAACTACTCTCAAGGTGGATATAGAGGTTATGGAGATGACTCT
TATGATGACTACTATGCACCACCAGCCAGACCTCGTGGTGGTCCACCAAG
CCGTGGCCCAAGTCGTGGTGGAGCAATGAGAGGGGGAAGAGGTAGTCCTC
GAGGAGGTTCAACTGGTGGTTTCCGTGGTGCTTCCAGAGGTGGATCATCT
AGAGGTGGTACTTATGGACAGCAAAGAGGAGGAATGAACAGAGGGCGTGG
TGGCTTTGGACGAGGAGGTTCAGACTATGGATCAGGCAGAGGTGGATCAA
GAGGAGGTACTGGTGGTTATGGCTCAAGAGGACGTGGTGCTGGGGCACCA
AAAAGGAAAGCAGATTATGGTGGTGATTATGGCACCCCCTCTAAACGTAA
GAATGAGTGGAACTCCCAACCCATTGCCCAACAACCCCTTGGTAACTCAT
CCAGCAACTATTACAATGATGACTACAGTGGCGGTGACTGGTACACAGAT
TTATCTGAGCCCAGATGGCAATAAAAATCTTTTctcaaaaacacaagaaa
aaggcATACACCAAATATTTGGatttaaaactctaaaacaagGCATTgct
taaaaactgaaaaaccaATGAagcattgatttttttcaagGATAACAACG
ATCACTAAATTAACCTCACGAAGAGTCAAAACGATTCAAATCTGTACAAT
TGTAAATTTactgaaagatttttaaaagcTTTCTATGATTTGAGAGGAAA
CTGAGAGATTAAAACAAGGACACAAAAGCTCATAAGTTCATACTTGTACA
GCCAAAATTTgctgttttattttataaaaaaatgtaaaaactggATGGTG
CTTATGTGGTGTTGTCgaaatgtaaaaatatttctttgcatCATTTTACA
GGTTTCGCTAACAAAGAAcatatatttttagtttttaataaACAAAACTT
TAGTTCATTCTCTTTCTTAAATAAAGTGTTGATTTAtgaaaacctttctt
tttggGGTttgtaaaattcaaatttcgaatCAAAGTCTTTGTCTCTTTTG
CTTATTCAAAATAAGCTGACTCCTTTAatttaaatgttaaaaaaattctt
tacagGGATTCAAATATATtccaaatttcatgtcgaagtgattgttttat
caaaa Run BLAST on NCBI transcript from alignment at scaffold_136:8323..22793+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047741 ID=TCONS_00047741|Name=TCONS_00047741|organism=Clytia hemisphaerica|type=transcript|length=14471bp|location=Sequence derived from alignment at scaffold_136:8323..22793+ (Clytia hemisphaerica)
TAAAGTACTTAATCGTTTCATCTTTGAAACGTGTGACCTCTGCTACACAG
TCGATTTTTCATTGCCCATGCTTTTATCATTTGAAGTTAATGAATGAAAG
GGACTCGATCAGCGCTTCCCGCCTCCAACTTTCTTCGACGCTTCTGCTGT
TTATTCTGTCAGTGAAACACTCTTTACACATCTTTAAAACCATGTCGCAT
AGTTCAATGTATGACAATTTGCTTGGACAGGGTGTGAACCCTTCCCTTGC
TGCGAAATTGGACGAGATTCATCAACAAGGACTCTTACAAGTTGATGAAT
TAGATGACCGAGCACTTGAAGCTTTGAAGGAATTCACAGAAGAGGACGCG
TTAAACGTACTGGGACAGTTTATGAAGAGTGATTTAACACATGTACAAAA
CAAGAGTGCTTTCTTATGTGGTGTCATGAAAACATACCGtgctaaaatga
aattgaaaagtgaGGAAGCAGCTACAAACCCATCAGCATCGACATCTGTC
ACACCACAACAGCAGCAACAAACAGAAGATGGAAAGAAAGGACCCAATGA
AGACAAAGTAAAACAACTCCTTAATAGAACTGGCTATACTCTTGATATTA
CAACTGGACAGAGAAAGTATGGTGGTCCACCACCAGGATGGGAAGGACCT
GCACCAGGAACTGGTGAAAAGGTAATCCCTTGTTGTCTCTTTCCtgactt
ttttgtttatttaattttcgagtagtttgagtaaagaagaCAAGTTATAT
AAATTTCATGCTCAAAGTCTAAGTTTCAACAGGATTACAATGGGCTATTA
CAAATTGGTTGAaacaatctaaccttactccagacccgatcaatcgaact
tgtcgaaccaatcgcaCAATCGAACTCCATCAAACGAATAAATTtcaata
caccttatcggaaattccacctcctcgcgttgttgctacgcaacactttt
tgggaggtaaacaaagctCGATACTGcgattttcaagcaaaaagccttac
aaaacacccaaaatattgatgccaaaagagcctccaaatcaactgaagaa
ccaccgaagttcttgtttttctctttcttataGCTTCTGCtatagcatct
tgaaagctgtgttttgtttgtttttttcaaattcagtgtatttttaggaa
cataTAAACAAGCCAGATATAAGCAAATGAGTTCTTGTTTTACGCGGGAA
CTTTTAGCGCTACTTGCACTGCCATTGGTCccatttatgtttacctccca
atttcAACGGATCCATCTTAGCGCGattgtttttgtggaatttccgatag
GCCGAGGGAATTGACATACCAGATTAGCGTCCGCCCGCGTGTGTTTGGTG
TAGCCGcgtaaaaatttcattattttaagaaaatttcattatttcacaGA
CAAACCTGAAAATTGAACTCCATCTCCTACAGCTATCATCATTGTCACCT
AAAGTGCGAAAAATAACAATTTCCTGCGCGTGCGTCATAGCCTCTGTTCG
ATCGGGACTTTAGTCCCCGTATACATCACACTACAAAAAATTAAACCCGC
TCTACactaaaagttttctttcaaatcgaACGATCGCGTAAGTCTTTAAT
TTTACCGCCGCGGCCTCTGGAATCGATTCTTTTTCCGGTCACGGATACTT
CAATTTCTGTAACTGCACATGCGCAATACATACCCGAGAAGATGTTTTCA
AAAGGTTGATCGTCTGTGGTGTGGTGGTGTTTGTACAGTGTGGATTTGTT
GCTGTAGAGCCTGTAAtggaaaaataatgaataatgaaaaatgaaaatat
gccGCATCTAGTTTCAGGCATGCTGGTGACGCTAAACTGGTATGTTAATT
CCCTCGGCCTATAGAGGACAAagtcaacatttttcaaagaaaatcattAG
ATTGGAAAATATTACTTTTTACGGTCTTGCTTTTCAACTGTTTCTCCTAA
GTCTaataaaaatgtcataaaaagaATTTTGCCCTAACTNAggtgtattt
aaaaaatttattgaacctaatcgaacactcacaatttttgaagcaatcaa
tagcagttcgattagtttgtcAGTAAAAACTTTGATTAGTTCCAGGATAT
taggctattccatttttaaaccatacacgttttttttttttataaggaac
cttaactttgctctgagcctggagttccttatttttacagagaatttcag
cctcaaagaacttatcgagttccttatttacatagctgctaagtttggat
tcgcaaaaTATTTAACTTCTTTATAATAGTATAACTtcttctcagcctga
gcagttccttaacaattccttattttttggaccattttcagcctcgggtt
ccttataaacgtgttccttatataaaaaaaaacgtgtatatacaggggta
ttgacaaacGTTTCCAGGAggtctgagccttgattttccaaggggttttt
ggtcattttcagattttccaagggggttattaaaGGTTCCAGgtttttcc
agggggttctcCCCTCCTACCCTCCTAaacctttttcacaaaatttcact
ttctaGGGGTGTTNTAAAGGTTCCAGGTGTTTCCAGGGGGTTCTCCCCTC
CTAaacctttttcacaaaatttcactttctaGGGGTGTTGACTCCtataa
tttccaggggatagtttgttatcaaagatttccaggggggttagtgaaaa
aagttcgtcaatacttctgtacaatttttttttggaatagcccattaaAT
CCTCATaatatcttccctcgcttgcaaaaacttaaTCCTGGCATGCTATT
TcaacagttcccggacttaaccTCCCGGTcctcgacaaaaaactttcaaa
ttttttatcggcattaggccaataagggggtggggggtccaactacatac
cgataaaaaaacaaatattgggacaaaaatcttttcagccaatttctttc
tgatttcgtccacaaactccactgaaagcatacaatttcacttgctttca
ccttcGCGCACAAATTAAcaactttaaaagtacagttttgaattagctat
gataaaaaaacccttttttcattggccagtGTGCTgccatttttttcgaa
atgttGTGATTTCATCGCgtctttttaactttcgttttgattaacaatat
caatgcgggtatgaacaaactcaatgttggtgcaaATACATAGACTAAAA
TTCAATGATGACGGGTGGAAAGGCAAGAATAATGCAATGGTGGacgtgat
tttggaaaaaattgtgttttccaagatgtaaaagttggtttcgaaaaatt
ttggccgataagagcaagggggagggggtctcaAGCTTATcagcccaatg
ccgataaaaaattcgaaagatgTTTGTCAAAGACCCCTTACAGTCAATAC
CTTTAGCCAAATTAAAAAAGTCCTGATTAGGAATATGAAGCAAATACCTA
GTGTTAAATAAGTATTTTCCAACCTAGTGATTGCCGATCCTTGCTTGACC
GGATGCAATATAAACCAATATAATAAGTCTTCACCAACAAAAATGAACAC
AATCCAATTTGAACCAACACAAGAATCAATTTGAACGATGATCAATatca
attgatccaaataccaTTTACAGAATACACATAAAGCCCCTCTGGCTATC
ATATATTATTGTTTATCACTTTGTATTATTCATCTATAATATAAGGTAGA
GATTAACATctagattttctccaaaaatagaaaaaatcgcaTGTTAAAAA
GCACTTCATAAGATTTAGGTGGGAAAGAAAGATTGAGCTCTTGACTTGCT
CGGGGGACCAAGCTACAATTCCACCATCCgcgaatgaaatttttcaattt
tttgcacagttatCATATTTGGTATACTGAATCTTTTGGTCATACTTGGA
ATTTGCAAATGTAGCTCGTTTCAGAGTTAttaaatttttagatatttctt
cctaattaggaataggATTTCTAATTAGTAATCCtggtaaaagtaagaaa
aatgttcctaatttggctaaaggtaTTGAccgggggggggtcaacattta
taataccaacccatagcccaaaaacctgacttttgagCTAAGacaacacc
accaccccaaaattagtctacacaatagacagatccaggattttaggcct
tactcttggtctataggcactgctataggtggccactagtgacccccacc
gggaattgtttattaataggtttaaagataatagacaacattcacaaaNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCC
CATTTTTGTAACTTGTCAAGGTCGTTTTGGAGAATAGTGGTGTCGTTTAG
GCTACGAATGATACGGTGTAGGAGTGAGTCGTCAGCAAATAAAGCAAATG
TGGATTCGGTTGTGAGTGGCAAATCGTTAATATATATGAGAAAGAGTAAT
GGGCCCAATACAGATCCCTGTGGTACTCCTGATTCAACTTTTGATTGTGG
GGACGTAGATCCTCGGACAACAACACATTGGGTTCTGTTGGATAGAAAGT
CAGTGATCCACGATAATATCTCATTTCGAATGCCGTAGTGATGTAATTTG
ATGAGTAGCTTTCTGCGGTTAACTTTATCGAAAGCCTTGCTAAAGTCTAG
AAGGACTGAGTCAATCTGTTCACTGTTGTTAAGGGCTTTTGCAAATTTAT
CAACTGTTGCTAGTAATTGTGTTTCGCATGAGCGTTGTTTGCGAAAACCG
TGTTGAGCATCACTAAGTGTACCGTCTTTCTCGAGATGGGTCATGATNGA
AACACTGCAATAATGTTGATTGAGAAGTTGGGCGATTTCACCATCATCTG
AGTGGGTTTGTCCATTTTTGTCAATGAGTGGCGCAACTCCGGCAATATCA
TTTCGCTTAGATTtgatatatttaaaaagtttctttttatttcctgTTAC
TGTCTCTTTAACGAAATTGTTTTTTGTGGTGTTACAGATCTTTCTATAGT
GTTTTGCTAAGGTCAAGTATTGCTTTCTTGCGTGTTGTAAAATTGACCAT
TTGAAGACCTGAAGTTTCAAAGACTTCAAGGTATTGTTCGTTTAGTTCTT
TCGAATACTGATTGGAAGTGATACTGTTGGTGTTCCAatctataggcggc
cactagtgacccccaccgggaattgtttattaataggtttaaagataata
gacaacattcacaaaagatgtttatcaatagagattttaaataaaagaat
gtttaaaacacagctgattggcttaggtttcgaaactctattgtttcatt
aaaacctcagtgcgcatgcgatttatctggaaaatttcaatattcaaaac
aagagcagtgctcatagcccgaagagtaggagttttacgctcaaaacgaa
ggaagatatgacataGCCTACCCCAAAATTggtcgataccaacttgaaaa
tcataattttcagggAAAgggttggtatcgataccaacatgactttttgg
atttgacaaaatatcatgggacccaccccctaatttaccaataccaatct
gacaaatttaaGCTTAAAGCTGTTTAgaggggacccaccccctcccacac
aaacagcCCTTGTAAtaagagaattttcaaaaaactcatttttgtaatac
tctttcttcaacacaacacagaaaatgtcatatgctaaaataaaaaatga
ctgaaaactgacaatataataaaaacaaacccaatgaagctagcaaaatc
aatctgaatcaatattatctgaatataattgattATTTTTCTTGCTAAAA
AGAAGAAGTATTGAATTTTCGCTCAAAGACCTCACAGATTCCAGACAGTT
TATTAGTTTAAATTATGGACTTGCACATTTTGCAAACCAAATTAGCTTAA
AATGGCTTGTTTATTCGATTTGAatactttcgaatgttttaaaatttcga
atattttttcgaaaattcgaatGTCTTTTgcccatttgaaattcgaattt
tcacaaaaagaaaaataaggttTCTTTACTCTGGTTTGTTTGATACTTAC
ACTACATCCTGCTTGATCAAGTTTGCTTTGGTGTTAGAGTTTTACCTTAA
TACAAAAACGACCAAGATAATAAAGAAATGCAGACTGTTTAATTTTTTCA
GGGTATtagctataagggcaaaaattaggaaagttttgctgtcattttga
tatggatatcaactttctgaatcatcttatttaaaaaaaggggtacccac
cccctattttggtatcaatacaaACCAtgaggataactcttttttttcta
aaaaaagggggacccacccccatcaataccaacttgacttttcagacttt
taaaggaaaaaatgacaccaccacccggctatggctggtatctggatgtt
gacccccctGTATTGACATTTGTTGTAttcggatatttgtctatccagAA
TAAAGTGTTTCGATTTCGCGCGCCGAGtagtggcggaatactacgcccca
acaaaccaCCTCTGGCGCTAAAGGAtgcaggaaaagtgtgtaacccgtta
tcggaagtaatttcccaaTTTACGTTatgaatttggctttgaaaagaggC
TAATATTGGTTTAtcaaactgatcgaaccgatcaaacttaatcgaacact
cacaatctttaaaaaatcttagagctcgattaaattttttaatcaaactt
taatcattCAATGGagttcaattagtttgattgtttccacaagttcgatt
gatcaggTCTGGCTCACTCGAACacatcgaatattacccaggaatcggcc
tttcgattgagattcaattgactatcgacaatcgaattgcaattattcga
ttgcgttcaattgattggCGTTtaattgacaccgtctggcccTCTGgcag
tctaagcttaaactcctatatcaggaatagaaactaggctagtcttacct
ctttcaGTCAcagaaatccttgcatttgcatgGGGTGTGCCTTTGCAACG
gtttcaacaattttttccaacccctgCAAGTGAGCTAGAACGTGTAAGGC
AAAATGCACGAAAATTATCAAATCtcaactttaaaatgaaaatgacataA
AACGAAGACGaatggcattttcattttttttctttagaagattctttagc
ctttttagaaaatttttgtctacaggttaaaatttttatctgtgcatttt
tttataatcaagtgaaacatttttccactcTGTGTAAATGGAACGGGTTG
CAGTGATCGAGTGTAATTGCACGGGGTTTTTTCGTCACTTTGGTTTTCAA
CCCATTGCATTTGCCGCATGTCGAACCCTGTAGTTTTTCTAGAAACCGAC
CAGGTGAAAGATAATAATTTTTTGACCCgaccgcagactatgggttaaTC
TATATggtcaggggggggggcacgcagttactctacaagacatgatgtgt
agtaagtgctttttcaacactttttttcaggaccaccaccctttgcagtt
actacaccttggtagtaactgttttcagaaaagatttccaggtaccaccc
ctgtttttgagtgatatcatcaaaaacatgctcgaaattaccctaaattg
caattatttttcaacctaaagccatttttgtgctagattttcttttaatt
tacttggttaacagctgttgagaacattttgatgataattagggaaagca
taatttcaaagttgggtctgagaaaaatttcaaattttttttgtccattt
ataacaaaaatattttttttaacaaagaattttttcacaaaaaacatcat
tttttgtgaaaaatttttaaagttctttctccttttacaattgatgaaCT
TTCAAAttgtgttaaacttttttcaaataataaatcttTAGGCGTTGATA
ATATTCCAACTCTGCTTTGGAAAGATCCCGTCTTTATGGAAATGCTTctc
gatttttgtaaaaaagaattgaaatataagcacttactacaccaaaagtg
ctagttttagtgtttggtaccacccccaaacagcagttactacactgtgt
agtaactgttttcataacttctgaatacagtaccaccacggtagtaagtg
tcatactgtcttgtagtaactgcgtgcccacCCCCCTgatatggttcatc
ataaagaaaattaagttgaccgttcaagctatcaaacgtcgtttggtttg
ATGTTCCCGCGTGTCaatcaagttttgtttgttagtagttgatacattaa
tATTTAGGGCTTCATACTGTTtctacataaaagttatctttttaaagttc
tatttcaatgatctgaagttatcaaaaaaagcaaaaaaagataatttttc
aggccggccgcatgaaagctttttttcttcatccacattccggaaacact
acatttttttattttgcctaaacataattttttttgctgcttttttattt
gatcataCTGCCATAGCTTAACCTGCATTctcttttttcagaaattctGT
TCCCAAGTATTTATTGGAAAGATACCAAGAGACATGTATGAAGATGAATT
GGTTCCGCTGTTTGAGCCTTATGGTCAAATCTATGATTTACGTATTATGG
TTGATCCTTTTAGTGGACTGAACAAAGGTTATGCATTTGTTACATACAGT
ACCAAAGAAGGAGCACAAAGTTCTGTCAAAGCTATGGAGAACCATGAAGT
AAGAGGTGGGAAAAAGCTTGGTGTTTGTCTTTCACAAGCAAATAACAGAC
TCTTTGTTGGATCTATTCCTAAGACAAAAACCAAACAAGATATCATGGAA
GAATTTAAGACCAAAGTTGAGGAGTTGACAGATGTTATTATGTACTTTTC
TGCAgaggataaaaataaaaacagaggTTTTGCTTTCCTTGACTTTGCCA
CACACAAAGATGCTGCTCAGGCAagacgaaaattgcaaagtgggCGTATC
AAGGTTTTTGGACACATTACTCCAGCTGTTGATTGGGCTGATTCCATGGA
TGAACCAAATGATGAAGTCATGTCTAAGGTAAGAGATTAGATCATTTTTA
GTAATTATCTCCATTTGGTGTTGCAGCCTCATTGAATTATTCAATTTGAT
AGCTTTCCTTGCTTTAACTTGGTTGTAATCAGGCTAATTATTGTATAATG
TATAAATAAGGCTGGCTTTTGATAGCTCAAGGTGTAAAATGACAGCGAAC
CACTCAAATTTCTTCCCCATTATACTCCTAATCATCATTTGAATTGCTTC
CATTTTCCATTTTTGTCACAAAGAACACAATTACAATACAAGTGCTTTAT
TTATGCCctgaagttaaaaaaattaatatttaggGTTTACACCGCCAAAG
TCAgcaatattttattaaaaaatcccAAACTTATTGATGTGAATAACCAA
GAATATTGaagttttgcggaatttaattttgcgatttAAAGGGCCAAATT
TGCATTAATTAATTCTGCATTAGTTAATTTTGCATTTATTTGTTCCCTCA
AGGCAATACTGATCTGCTATTTTAGTAGTATAGTTCAGTTTATACATAGT
TTGCGCCCCCTTTTTTTAATGGGGCGGGATGCTAGATTTTTGGGGGGCCT
TTGAAGGGGTTACCAAAATGTGCCTAAATTTTTTGGGtgggaatgtaggg
gggggtcaaaaaagaaaaggggGTTTGGAAAATCTGGTCAACTCAATAAT
TTACATATAGTCGAAGTCcgttttaaagtaaaattatGTACCACCAAAAT
ACAAAAGTGTATAATGttaatcaaaatattatttatatGTAATGGTTATC
GACAAAAAgagaacgagaaaaatataACCAATATTGTACGAGTGAAAGTc
tttgtgttttgtttataCTTCCTGTATTTTGGTGAAATTAACATCAAAAC
ATGCGAAATTGATTAGAATTTTCATTAAACAGTACAAAACACTCTTAATT
GACCTGACttgacaatttttttgtgatttgagAGGAAAACGAAAACATTT
CTGGGAATAAATTTTGGTAAAAGATACGACAAGAAAGTTCAAATTATGAC
CTCTCActtaccagaccccttttttgAAAACGCtgtcttgtatttgtacg
gtacaatatgaaGTACAGGATTTATGTAAGCATTttaagccaatcagatt
gcttatatttttcatgttgatgataaATAATGTTATATCTTGAAATTGTT
GCATTTTGGACTCTTTGAtcattttttttggggggggggggcaagattgc
attacaaaagggggatgaaataaacctagggggttcatacccctctgcaa
actctGTTATAgcaatcatttttcatttctttttaggTGAAAGTTGTCTA
TGTCAGACATTTATCTCCAGCCATCGACGAAAACAAATTGAATGAACTTT
TCGAACAATATGGTCCTGTTGAGAAAGTGAAAAAGATTAAGGATTATGCT
TTCATTAACTTTGCTAACAGGGATGATGCAATGAGAGCTATTGAGGAACT
TGATAACCAAGAATTGGACGATTTAAAAATTTCAGTACAACTTGCTAAAC
CTCAAGTAGATAAAACAGGTCAACGACGTGGGCAATCTGGGTTTGGTGCT
CTTAACAAAAAGGGTGAGTCTGACAATTTTGTCCCCAGAGGAAGAGGTGG
TTTTTCTGGTCGTGGAGCTGGTGGCCCAAGAGGGCGTGGAAGAGGAGGAT
TTGGAGGTGGTTTCTCACATGGAGGGAACTACTCTCAAGGTGGATATAGA
GGTTATGGAGATGACTCTTATGATGACTACTATGCACCACCAGCCAGACC
TCGTGGTGGTCCACCAAGCCGTGGCCCAAGTCGTGGTGGAGCAATGAGAG
GGGGAAGAGGTAGTCCTCGAGGAGGTTCAACTGGTGGTTTCCGTGGTGCT
TCCAGAGGTGGATCATCTAGAGGTGGTACTTATGGACAGCAAAGAGGAGG
AATGAACAGAGGGCGTGGTGGCTTTGGACGAGGAGGTTCAGACTATGGAT
CAGGCAGAGGTGGATCAAGAGGAGGTACTGGTGGTTATGGCTCAAGAGGA
CGTGGTGCTGGGGCACCAAAAAGGAAAGCAGATTATGGTGGTGATTATGG
CACCCCCTCTAAACGTAAGAATGAGTGGAACTCCCAACCCATTGCCCAAC
AACCCCTTGGTAACTCATCCAGCAACTATTACAATGATGACTACAGTGGC
GGTGACTGGTACACAGATTTATCTGAGCCCAGATGGCAATAAAAATCTTT
TctcaaaaacacaagaaaaaggcATACACCAAATATTTGGatttaaaact
ctaaaacaagGCATTGctttaaaactgaaaaaccAATGAagcattgattt
ttttcaagGATAACAACGATCACTAAATTAACCTCACGAAGAGTCAAAAC
GATTCAAATCTGTACAATTGTAAATTTactgaaagatttttaaaagcTTT
CTATGATTTGAGAGGAAACTGAGAGATTAAAACAAGGACACAAAAGCTCA
TAAGTTCATACTTGTACAGCCAAAATTTgctgttttattttataaaaaaa
tgtaaaaactggATGGTGCTTATGTGGTGTTGTCgaaatgtaaaaatatt
tctttgcatCATTTTACAGGTTTCGCTAACAAAGAAcatatatttttagt
ttttaataaACAAAACTTTAGTTCATTCTCTTTCTTAAATAAAGTGTTGA
TTTAtgaaaacctttctttttggGGTttgtaaaattcaaatttcgaatCA
AAGTCTTTGTCTCTTTTGCTTATTCAAAATAAGCTGACTCCTTTAattta
aatgttaaaaaaattctttacagGGATTCAAATATATtccaaatttcatg
tcgaagtgattgttttatcaaaaaaaaggaAACTAGAAAAGGAGATTGTT
TTTTACTATTATGTGTCCCTCTGAATTTTATTTATCTTTAAAAATGGTGA
CTTAAAATTGAGAATACCTTTNAAGTGAAAAAGATTAAGGATTATGCTTT
CATTAACTTTGCTAACAGGGATGATGCAATGAGAGCTATTGAGGAACTTG
ATAACCAAGAATTGGACGATTTAAAAATTTCAGTACAACTTGCTAAACCT
CAAGTAGATAAAACAGGTCAACGACGTGGGCAATCTGGGTTTGGTGCTCT
TAACAAAAAGGGTGAGTCTGACAATTTTGTCCCCAGAGGAAGAGGTGGTT
TTTCTGGTCGTGGAGCTGGTGGCCCAAGAGGGCGTGGAAGAGGAGGATTT
GGAGGTGGTTTCTCACATGGAGGGAACTACTCTCAAGGTGGATATAGAGG
TTATGGAGATGACTCTTATGATGACTACTATGCACCACCAGCCAGACCTC
GTGGTGGTCCACCAAGCCGTGGCCCAAGTCGTGGTGGAGCAATGAGAGGG
GGAAGAGGTAGTCCTCGAGGAGGTTCAACTGGTGGTTTCCGTGGTGCTTC
CAGAGGTGGATCATCTAGAGGTGGTACTTATGGACAGCAAAGAGGAGGAA
TGAACAGAGGGCGTGGTGGCTTTGGACGAGGAGGTTCAGACTATGGATCA
GGCAGAGGTGGATCAAGAGGAGGTACTGGTGGTTATGGCTCAAGAGGACG
TGGTGCTGGGGCACCAAAAAGGAAAGCAGATTATGGTGGTGATTATGGCA
CCCCCTCTAAACGTAAGAATGAGTGGAACTCCCAACCCATTGCCCAACAA
CCCCTTGGTAACTCATCCAGCAACTATTACAATGATGACTACAGTGGCGG
TGACTGGTACACAGATTTATCTGAGCCCAGATGGCAATAAAAATCTTTTc
tcaaaaacacaagaaaaaggcATACACCAAATATTTGGatttaaaactct
aaaacaagGCATTgcttaaaaactgaaaaaccaATGAagcattgattttt
ttcaagGATAACAACGATCACTAAATTAACCTCACGAAGAGTCAAAACGA
TTCAAATCTGTACAATTGTAAATTTactgaaagatttttaaaagcTTTCT
ATGATTTGAGAGGAAACTGAGAGATTAAAACAAGGACACAAAAGCTCATA
AGTTCATACTTGTACAGCCAAAATTTgctgttttattttataaaaaaatg
taaaaactggATGGTGCTTATGTGGTGTTGTCgaaatgtaaaaatatttc
tttgcatCATTTTACAGGTTTCGCTAACAAAGAAcatatatttttagttt
ttaataaACAAAACTTTAGTTCATTCTCTTTCTTAAATAAAGTGTTGATT
TAtgaaaacctttctttttggGGTttgtaaaattcaaatttcgaatCAAA
GTCTTTGTCTCTTTTGCTTATTCAAAATAAGCTGACTCCTTTAatttaaa
tgttaaaaaaattctttacagGGATTCAAATATATtccaaatttcatgtc
gaagtgattgttttatcaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047741-exon-scaffold_136-1491911889:8323..8993 | TCONS_00047741-exon-scaffold_136-1491911889:8323..8993 | Clytia hemisphaerica | exon |
| TCONS_00047741-exon-scaffold_136-1510915933:8323..8993 | TCONS_00047741-exon-scaffold_136-1510915933:8323..8993 | Clytia hemisphaerica | exon |
| TCONS_00047741-exon-scaffold_136-1575043694:8323..8993 | TCONS_00047741-exon-scaffold_136-1575043694:8323..8993 | Clytia hemisphaerica | exon |
| TCONS_00047741-exon-scaffold_136-1491911889:17864..18400 | TCONS_00047741-exon-scaffold_136-1491911889:17864..18400 | Clytia hemisphaerica | exon |
| TCONS_00047741-exon-scaffold_136-1510915933:17864..18400 | TCONS_00047741-exon-scaffold_136-1510915933:17864..18400 | Clytia hemisphaerica | exon |
| TCONS_00047741-exon-scaffold_136-1575043694:17864..18400 | TCONS_00047741-exon-scaffold_136-1575043694:17864..18400 | Clytia hemisphaerica | exon |
| TCONS_00047741-exon-scaffold_136-1491911889:19709..20078 | TCONS_00047741-exon-scaffold_136-1491911889:19709..20078 | Clytia hemisphaerica | exon |
| TCONS_00047741-exon-scaffold_136-1510915933:19709..20078 | TCONS_00047741-exon-scaffold_136-1510915933:19709..20078 | Clytia hemisphaerica | exon |
| TCONS_00047741-exon-scaffold_136-1575043694:19709..20078 | TCONS_00047741-exon-scaffold_136-1575043694:19709..20078 | Clytia hemisphaerica | exon |
| TCONS_00047741-exon-scaffold_136-1491911889:21567..22793 | TCONS_00047741-exon-scaffold_136-1491911889:21567..22793 | Clytia hemisphaerica | exon |
| TCONS_00047741-exon-scaffold_136-1510915933:21567..22793 | TCONS_00047741-exon-scaffold_136-1510915933:21567..22793 | Clytia hemisphaerica | exon |
| TCONS_00047741-exon-scaffold_136-1575043694:21567..22793 | TCONS_00047741-exon-scaffold_136-1575043694:21567..22793 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_136 | supercontig | scaffold_136:8323..22793 + |
Blast
BLAST of TCONS_00047741 vs. Swiss-Prot (Human)
Match: HNRPQ (Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens GN=SYNCRIP PE=1 SV=2) HSP 1 Score: 437.958 bits (1125), Expect = 4.902e-141 Identity = 224/420 (53.33%), Postives = 298/420 (70.95%), Query Frame = 3
Query: 198 HSSMYDNLLGQGVNPSLAAKLDEIHQQGLLQVDELDDRALEALKEFTEEDALNVLGQFMKSDLTHVQNKSAFLCGVMKTYRAKMKLKSEEAATNPSASTSVTPXXXXXTEDGKKGPNEDKVKQLLNRTGYTLDITTGQRKYXXXXXXXXXXXXXXXEKKFCSQVFIGKIPRDMYEDELVPLFEPYGQIYDLRIMVDPFSGLNKGYAFVTYSTKEGAQSSVKAMENHEVRGGKKLGVCLSQANNRLFVGSIPKTKTKQDIMEEFKTKVEELTDVIMYFSAEDKNKNRGFAFLDFATHKDAAQARRKLQSGRIKVFGHITPAVDWADSMDEPNDEVMSKVKVVYVRHLSPAIDENKLNELFEQYGPVEKVKKIKDYAFINFANRDDAMRAIEELDNQELDDLKISVQLAKPQVDKTGQRRGQ 1457
HS + LL G+ +A KLDEI+ GL+ +LD+RA+EALKEF E+ AL VL QF SDL+HVQNKSAFLCGVMKTYR + K ++ A D KGP+E K+K LL RTGYTLD+TTGQRKYGGPPP + +++F+GKIPRD++EDELVPLFE G I+DLR+M+DP +GLN+GYAFVT+ TKE AQ +VK NHE+R GK +GVC+S ANNRLFVGSIPK+KTK+ I+EEF E LTDVI+Y +DK KNRGF FL++ HK AAQARR+L SG++KV+G++ V+WAD +++P+ EVM+KVKV++VR+L+ + E L + F Q+G +E+VKK+KDYAFI+F RD A++A+EE++ ++L+ I + AKP K +R+ Q
Sbjct: 23 HSENFQTLLDAGLPQKVAEKLDEIYVAGLVAHSDLDERAIEALKEFNEDGALAVLQQFKDSDLSHVQNKSAFLCGVMKTYRQREKQGTKVA-------------------DSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQ---QPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG-TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQ 419
The following BLAST results are available for this feature:
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