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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047739 ID=TCONS_00047739|Name=TCONS_00047739|organism=Clytia hemisphaerica|type=transcript|length=2799bp
TGTTTAGACTAAAGTACTTAATCGTTTCATCTTTGAAACGTGTGACCTCT
GCTACACAGTCGATTTTTCATTGCCCATGCTTTTATCATTTGAAGTTAAT
GAATGAAAGGGACTCGATCAGCGCTTCCCGCCTCCAACTTTCTTCGACGC
TTCTGCTGTTTATTCTGTCAGTGAAACACTCTTTACACATCTTTAAAACC
ATGTCGCATAGTTCAATGTATGACAATTTGCTTGGACAGGGTGTGAACCC
TTCCCTTGCTGCGAAATTGGACGAGATTCATCAACAAGGACTCTTACAAG
TTGATGAATTAGATGACCGAGCACTTGAAGCTTTGAAGGAATTCACAGAA
GAGGACGCGTTAAACGTACTGGGACAGTTTATGAAGAGTGATTTAACACA
TGTACAAAACAAGAGTGCTTTCTTATGTGGTGTCATGAAAACATACCGtg
ctaaaatgaaattgaaaagtgaGGAAGCAGCTACAAACCCATCAGCATCG
ACATCTGTCACACCACAACAGCAGCAACAAACAGAAGATGGAAAGAAAGG
ACCCAATGAAGACAAAGTAAAACAACTCCTTAATAGAACTGGCTATACTC
TTGATATTACAACTGGACAGAGAAAGTATGGTGGTCCACCACCAGGATGG
GAAGGACCTGCACCAGGAACTGGTGAAAAGaaattctGTTCCCAAGTATT
TATTGGAAAGATACCAAGAGACATGTATGAAGATGAATTGGTTCCGCTGT
TTGAGCCTTATGGTCAAATCTATGATTTACGTATTATGGTTGATCCTTTT
AGTGGACTGAACAAAGGTTATGCATTTGTTACATACAGTACCAAAGAAGG
AGCACAAAGTTCTGTCAAAGCTATGGAGAACCATGAAGTAAGAGGTGGGA
AAAAGCTTGGTGTTTGTCTTTCACAAGCAAATAACAGACTCTTTGTTGGA
TCTATTCCTAAGACAAAAACCAAACAAGATATCATGGAAGAATTTAAGAC
CAAAGTTGAGGAGTTGACAGATGTTATTATGTACTTTTCTGCAgaggata
aaaataaaaacagaggTTTTGCTTTCCTTGACTTTGCCACACACAAAGAT
GCTGCTCAGGCAagacgaaaattgcaaagtgggCGTATCAAGGTTTTTGG
ACACATTACTCCAGCTGTTGATTGGGCTGATTCCATGGATGAACCAAATG
ATGAAGTCATGTCTAAGgTGAAAGTTGTCTATGTCAGACATTTATCTCCA
GCCATCGACGAAAACAAATTGAATGAACTTTTCGAACAATATGGTCCTGT
TGAGAAAGTGAAAAAGATTAAGGATTATGCTTTCATTAACTTTGCTAACA
GGGATGATGCAATGAGAGCTATTGAGGAACTTGATAACCAAGAATTGGAC
GATTTAAAAATTTCAGTACAACTTGCTAAACCTCAAGTAGATAAAACAGG
TCAACGACGTGGGCAATCTGGGTTTGGTGCTCTTAACAAAAAGGGTGAGT
CTGACAATTTTGTCCCCAGAGGAAGAGGTGGTTTTTCTGGTCGTGGAGCT
GGTGGCCCAAGAGGGCGTGGAAGAGGAGGATTTGGAGGTGGTTTCTCACA
TGGAGGGAACTACTCTCAAGGTGGATATAGAGGTTATGGAGATGACTCTT
ATGATGACTACTATGCACCACCAGCCAGACCTCGTGGTGGTCCACCAAGC
CGTGGCCCAAGTCGTGGTGGAGCAATGAGAGGGGGAAGAGGTAGTCCTCG
AGGAGGTTCAACTGGTGGTTTCCGTGGTGCTTCCAGAGGTGGATCATCTA
GAGGTGGTACTTATGGACAGCAAAGAGGAGGAATGAACAGAGGGCGTGGT
GGCTTTGGACGAGGAGGTTCAGACTATGGATCAGGCAGAGGTGGATCAAG
AGGAGGTACTGGTGGTTATGGCTCAAGAGGACGTGGTGCTGGGGCACCAA
AAAGGAAAGCAGATTATGGTGGTGATTATGGCACCCCCTCTAAACGTAAG
AATGAGTGGAACTCCCAACCCATTGCCCAACAACCCCTTGGTAACTCATC
CAGCAACTATTACAATGATGACTACAGTGGCGGTGACTGGTACACAGATT
TATCTGAGCCCAGATGGCAATAAAAATCTTTTctcaaaaacacaagaaaa
aggcATACACCAAATATTTGGatttaaaactctaaaacaagaaaaaggcA
TACACCAAATATTTGGatttaaaactctaaaacaagGCATTgcttaaaaa
ctgaaaaaccaATGAagcattgatttttttcaagGATAACAACGATCACT
AAATTAACCTCACGAAGAGTCAAAACGATTCAAATCTGTACAATTGTAAA
TTTactgaaagatttttaaaagcTTTCTATGATTTGAGAGGAAACTGAGA
GATTAAAACAAGGACACAAAAGCTCATAAGTTCATACTTGTACAGCCAAA
ATTTgctgttttattttataaaaaaatgtaaaaactggATGGTGCTTATG
TGGTGTTGTCgaaatgtaaaaatatttctttgcatCATTTTACAGGTTTC
GCTAACAAAGAAcatatatttttagtttttaataaACAAAACTTTAGTTC
ATTCTCTTTCTTAAATAAAGTGTTGATTTAtgaaaacctttctttttggG
GTttgtaaaattcaaatttcgaatCAAAGTCTTTGTCTCTTTTGCTTATT
CAAAATAAGCTGACTCCTTTAatttaaatgttaaaaaaattctttacagG
GATTCAAATATATtccaaatttcatgtcgaagtgattgttttatcaaaa Run BLAST on NCBI transcript from alignment at scaffold_136:8314..22793+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047739 ID=TCONS_00047739|Name=TCONS_00047739|organism=Clytia hemisphaerica|type=transcript|length=14480bp|location=Sequence derived from alignment at scaffold_136:8314..22793+ (Clytia hemisphaerica)
TGTTTAGACTAAAGTACTTAATCGTTTCATCTTTGAAACGTGTGACCTCT
GCTACACAGTCGATTTTTCATTGCCCATGCTTTTATCATTTGAAGTTAAT
GAATGAAAGGGACTCGATCAGCGCTTCCCGCCTCCAACTTTCTTCGACGC
TTCTGCTGTTTATTCTGTCAGTGAAACACTCTTTACACATCTTTAAAACC
ATGTCGCATAGTTCAATGTATGACAATTTGCTTGGACAGGGTGTGAACCC
TTCCCTTGCTGCGAAATTGGACGAGATTCATCAACAAGGACTCTTACAAG
TTGATGAATTAGATGACCGAGCACTTGAAGCTTTGAAGGAATTCACAGAA
GAGGACGCGTTAAACGTACTGGGACAGTTTATGAAGAGTGATTTAACACA
TGTACAAAACAAGAGTGCTTTCTTATGTGGTGTCATGAAAACATACCGtg
ctaaaatgaaattgaaaagtgaGGAAGCAGCTACAAACCCATCAGCATCG
ACATCTGTCACACCACAACAGCAGCAACAAACAGAAGATGGAAAGAAAGG
ACCCAATGAAGACAAAGTAAAACAACTCCTTAATAGAACTGGCTATACTC
TTGATATTACAACTGGACAGAGAAAGTATGGTGGTCCACCACCAGGATGG
GAAGGACCTGCACCAGGAACTGGTGAAAAGGTAATCCCTTGTTGTCTCTT
TCCtgacttttttgtttatttaattttcgagtagtttgagtaaagaagaC
AAGTTATATAAATTTCATGCTCAAAGTCTAAGTTTCAACAGGATTACAAT
GGGCTATTACAAATTGGTTGAaacaatctaaccttactccagacccgatc
aatcgaacttgtcgaaccaatcgcaCAATCGAACTCCATCAAACGAATAA
ATTtcaatacaccttatcggaaattccacctcctcgcgttgttgctacgc
aacactttttgggaggtaaacaaagctCGATACTGcgattttcaagcaaa
aagccttacaaaacacccaaaatattgatgccaaaagagcctccaaatca
actgaagaaccaccgaagttcttgtttttctctttcttataGCTTCTGCt
atagcatcttgaaagctgtgttttgtttgtttttttcaaattcagtgtat
ttttaggaacataTAAACAAGCCAGATATAAGCAAATGAGTTCTTGTTTT
ACGCGGGAACTTTTAGCGCTACTTGCACTGCCATTGGTCccatttatgtt
tacctcccaatttcAACGGATCCATCTTAGCGCGattgtttttgtggaat
ttccgatagGCCGAGGGAATTGACATACCAGATTAGCGTCCGCCCGCGTG
TGTTTGGTGTAGCCGcgtaaaaatttcattattttaagaaaatttcatta
tttcacaGACAAACCTGAAAATTGAACTCCATCTCCTACAGCTATCATCA
TTGTCACCTAAAGTGCGAAAAATAACAATTTCCTGCGCGTGCGTCATAGC
CTCTGTTCGATCGGGACTTTAGTCCCCGTATACATCACACTACAAAAAAT
TAAACCCGCTCTACactaaaagttttctttcaaatcgaACGATCGCGTAA
GTCTTTAATTTTACCGCCGCGGCCTCTGGAATCGATTCTTTTTCCGGTCA
CGGATACTTCAATTTCTGTAACTGCACATGCGCAATACATACCCGAGAAG
ATGTTTTCAAAAGGTTGATCGTCTGTGGTGTGGTGGTGTTTGTACAGTGT
GGATTTGTTGCTGTAGAGCCTGTAAtggaaaaataatgaataatgaaaaa
tgaaaatatgccGCATCTAGTTTCAGGCATGCTGGTGACGCTAAACTGGT
ATGTTAATTCCCTCGGCCTATAGAGGACAAagtcaacatttttcaaagaa
aatcattAGATTGGAAAATATTACTTTTTACGGTCTTGCTTTTCAACTGT
TTCTCCTAAGTCTaataaaaatgtcataaaaagaATTTTGCCCTAACTNA
ggtgtatttaaaaaatttattgaacctaatcgaacactcacaatttttga
agcaatcaatagcagttcgattagtttgtcAGTAAAAACTTTGATTAGTT
CCAGGATATtaggctattccatttttaaaccatacacgtttttttttttt
ataaggaaccttaactttgctctgagcctggagttccttatttttacaga
gaatttcagcctcaaagaacttatcgagttccttatttacatagctgcta
agtttggattcgcaaaaTATTTAACTTCTTTATAATAGTATAACTtcttc
tcagcctgagcagttccttaacaattccttattttttggaccattttcag
cctcgggttccttataaacgtgttccttatataaaaaaaaacgtgtatat
acaggggtattgacaaacGTTTCCAGGAggtctgagccttgattttccaa
ggggtttttggtcattttcagattttccaagggggttattaaaGGTTCCA
GgtttttccagggggttctcCCCTCCTACCCTCCTAaacctttttcacaa
aatttcactttctaGGGGTGTTNTAAAGGTTCCAGGTGTTTCCAGGGGGT
TCTCCCCTCCTAaacctttttcacaaaatttcactttctaGGGGTGTTGA
CTCCtataatttccaggggatagtttgttatcaaagatttccaggggggt
tagtgaaaaaagttcgtcaatacttctgtacaatttttttttggaatagc
ccattaaATCCTCATaatatcttccctcgcttgcaaaaacttaaTCCTGG
CATGCTATTTcaacagttcccggacttaaccTCCCGGTcctcgacaaaaa
actttcaaattttttatcggcattaggccaataagggggtggggggtcca
actacataccgataaaaaaacaaatattgggacaaaaatcttttcagcca
atttctttctgatttcgtccacaaactccactgaaagcatacaatttcac
ttgctttcaccttcGCGCACAAATTAAcaactttaaaagtacagttttga
attagctatgataaaaaaacccttttttcattggccagtGTGCTgccatt
tttttcgaaatgttGTGATTTCATCGCgtctttttaactttcgttttgat
taacaatatcaatgcgggtatgaacaaactcaatgttggtgcaaATACAT
AGACTAAAATTCAATGATGACGGGTGGAAAGGCAAGAATAATGCAATGGT
GGacgtgattttggaaaaaattgtgttttccaagatgtaaaagttggttt
cgaaaaattttggccgataagagcaagggggagggggtctcaAGCTTATc
agcccaatgccgataaaaaattcgaaagatgTTTGTCAAAGACCCCTTAC
AGTCAATACCTTTAGCCAAATTAAAAAAGTCCTGATTAGGAATATGAAGC
AAATACCTAGTGTTAAATAAGTATTTTCCAACCTAGTGATTGCCGATCCT
TGCTTGACCGGATGCAATATAAACCAATATAATAAGTCTTCACCAACAAA
AATGAACACAATCCAATTTGAACCAACACAAGAATCAATTTGAACGATGA
TCAATatcaattgatccaaataccaTTTACAGAATACACATAAAGCCCCT
CTGGCTATCATATATTATTGTTTATCACTTTGTATTATTCATCTATAATA
TAAGGTAGAGATTAACATctagattttctccaaaaatagaaaaaatcgca
TGTTAAAAAGCACTTCATAAGATTTAGGTGGGAAAGAAAGATTGAGCTCT
TGACTTGCTCGGGGGACCAAGCTACAATTCCACCATCCgcgaatgaaatt
tttcaattttttgcacagttatCATATTTGGTATACTGAATCTTTTGGTC
ATACTTGGAATTTGCAAATGTAGCTCGTTTCAGAGTTAttaaatttttag
atatttcttcctaattaggaataggATTTCTAATTAGTAATCCtggtaaa
agtaagaaaaatgttcctaatttggctaaaggtaTTGAccgggggggggt
caacatttataataccaacccatagcccaaaaacctgacttttgagCTAA
Gacaacaccaccaccccaaaattagtctacacaatagacagatccaggat
tttaggccttactcttggtctataggcactgctataggtggccactagtg
acccccaccgggaattgtttattaataggtttaaagataatagacaacat
tcacaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNCTTCCCATTTTTGTAACTTGTCAAGGTCGTTTTGGAGAATAGTGGT
GTCGTTTAGGCTACGAATGATACGGTGTAGGAGTGAGTCGTCAGCAAATA
AAGCAAATGTGGATTCGGTTGTGAGTGGCAAATCGTTAATATATATGAGA
AAGAGTAATGGGCCCAATACAGATCCCTGTGGTACTCCTGATTCAACTTT
TGATTGTGGGGACGTAGATCCTCGGACAACAACACATTGGGTTCTGTTGG
ATAGAAAGTCAGTGATCCACGATAATATCTCATTTCGAATGCCGTAGTGA
TGTAATTTGATGAGTAGCTTTCTGCGGTTAACTTTATCGAAAGCCTTGCT
AAAGTCTAGAAGGACTGAGTCAATCTGTTCACTGTTGTTAAGGGCTTTTG
CAAATTTATCAACTGTTGCTAGTAATTGTGTTTCGCATGAGCGTTGTTTG
CGAAAACCGTGTTGAGCATCACTAAGTGTACCGTCTTTCTCGAGATGGGT
CATGATNGAAACACTGCAATAATGTTGATTGAGAAGTTGGGCGATTTCAC
CATCATCTGAGTGGGTTTGTCCATTTTTGTCAATGAGTGGCGCAACTCCG
GCAATATCATTTCGCTTAGATTtgatatatttaaaaagtttctttttatt
tcctgTTACTGTCTCTTTAACGAAATTGTTTTTTGTGGTGTTACAGATCT
TTCTATAGTGTTTTGCTAAGGTCAAGTATTGCTTTCTTGCGTGTTGTAAA
ATTGACCATTTGAAGACCTGAAGTTTCAAAGACTTCAAGGTATTGTTCGT
TTAGTTCTTTCGAATACTGATTGGAAGTGATACTGTTGGTGTTCCAatct
ataggcggccactagtgacccccaccgggaattgtttattaataggttta
aagataatagacaacattcacaaaagatgtttatcaatagagattttaaa
taaaagaatgtttaaaacacagctgattggcttaggtttcgaaactctat
tgtttcattaaaacctcagtgcgcatgcgatttatctggaaaatttcaat
attcaaaacaagagcagtgctcatagcccgaagagtaggagttttacgct
caaaacgaaggaagatatgacataGCCTACCCCAAAATTggtcgatacca
acttgaaaatcataattttcagggAAAgggttggtatcgataccaacatg
actttttggatttgacaaaatatcatgggacccaccccctaatttaccaa
taccaatctgacaaatttaaGCTTAAAGCTGTTTAgaggggacccacccc
ctcccacacaaacagcCCTTGTAAtaagagaattttcaaaaaactcattt
ttgtaatactctttcttcaacacaacacagaaaatgtcatatgctaaaat
aaaaaatgactgaaaactgacaatataataaaaacaaacccaatgaagct
agcaaaatcaatctgaatcaatattatctgaatataattgattATTTTTC
TTGCTAAAAAGAAGAAGTATTGAATTTTCGCTCAAAGACCTCACAGATTC
CAGACAGTTTATTAGTTTAAATTATGGACTTGCACATTTTGCAAACCAAA
TTAGCTTAAAATGGCTTGTTTATTCGATTTGAatactttcgaatgtttta
aaatttcgaatattttttcgaaaattcgaatGTCTTTTgcccatttgaaa
ttcgaattttcacaaaaagaaaaataaggttTCTTTACTCTGGTTTGTTT
GATACTTACACTACATCCTGCTTGATCAAGTTTGCTTTGGTGTTAGAGTT
TTACCTTAATACAAAAACGACCAAGATAATAAAGAAATGCAGACTGTTTA
ATTTTTTCAGGGTATtagctataagggcaaaaattaggaaagttttgctg
tcattttgatatggatatcaactttctgaatcatcttatttaaaaaaagg
ggtacccaccccctattttggtatcaatacaaACCAtgaggataactctt
ttttttctaaaaaaagggggacccacccccatcaataccaacttgacttt
tcagacttttaaaggaaaaaatgacaccaccacccggctatggctggtat
ctggatgttgacccccctGTATTGACATTTGTTGTAttcggatatttgtc
tatccagAATAAAGTGTTTCGATTTCGCGCGCCGAGtagtggcggaatac
tacgccccaacaaaccaCCTCTGGCGCTAAAGGAtgcaggaaaagtgtgt
aacccgttatcggaagtaatttcccaaTTTACGTTatgaatttggctttg
aaaagaggCTAATATTGGTTTAtcaaactgatcgaaccgatcaaacttaa
tcgaacactcacaatctttaaaaaatcttagagctcgattaaatttttta
atcaaactttaatcattCAATGGagttcaattagtttgattgtttccaca
agttcgattgatcaggTCTGGCTCACTCGAACacatcgaatattacccag
gaatcggcctttcgattgagattcaattgactatcgacaatcgaattgca
attattcgattgcgttcaattgattggCGTTtaattgacaccgtctggcc
cTCTGgcagtctaagcttaaactcctatatcaggaatagaaactaggcta
gtcttacctctttcaGTCAcagaaatccttgcatttgcatgGGGTGTGCC
TTTGCAACGgtttcaacaattttttccaacccctgCAAGTGAGCTAGAAC
GTGTAAGGCAAAATGCACGAAAATTATCAAATCtcaactttaaaatgaaa
atgacataAAACGAAGACGaatggcattttcattttttttctttagaaga
ttctttagcctttttagaaaatttttgtctacaggttaaaatttttatct
gtgcatttttttataatcaagtgaaacatttttccactcTGTGTAAATGG
AACGGGTTGCAGTGATCGAGTGTAATTGCACGGGGTTTTTTCGTCACTTT
GGTTTTCAACCCATTGCATTTGCCGCATGTCGAACCCTGTAGTTTTTCTA
GAAACCGACCAGGTGAAAGATAATAATTTTTTGACCCgaccgcagactat
gggttaaTCTATATggtcaggggggggggcacgcagttactctacaagac
atgatgtgtagtaagtgctttttcaacactttttttcaggaccaccaccc
tttgcagttactacaccttggtagtaactgttttcagaaaagatttccag
gtaccacccctgtttttgagtgatatcatcaaaaacatgctcgaaattac
cctaaattgcaattatttttcaacctaaagccatttttgtgctagatttt
cttttaatttacttggttaacagctgttgagaacattttgatgataatta
gggaaagcataatttcaaagttgggtctgagaaaaatttcaaattttttt
tgtccatttataacaaaaatattttttttaacaaagaattttttcacaaa
aaacatcattttttgtgaaaaatttttaaagttctttctccttttacaat
tgatgaaCTTTCAAAttgtgttaaacttttttcaaataataaatcttTAG
GCGTTGATAATATTCCAACTCTGCTTTGGAAAGATCCCGTCTTTATGGAA
ATGCTTctcgatttttgtaaaaaagaattgaaatataagcacttactaca
ccaaaagtgctagttttagtgtttggtaccacccccaaacagcagttact
acactgtgtagtaactgttttcataacttctgaatacagtaccaccacgg
tagtaagtgtcatactgtcttgtagtaactgcgtgcccacCCCCCTgata
tggttcatcataaagaaaattaagttgaccgttcaagctatcaaacgtcg
tttggtttgATGTTCCCGCGTGTCaatcaagttttgtttgttagtagttg
atacattaatATTTAGGGCTTCATACTGTTtctacataaaagttatcttt
ttaaagttctatttcaatgatctgaagttatcaaaaaaagcaaaaaaaga
taatttttcaggccggccgcatgaaagctttttttcttcatccacattcc
ggaaacactacatttttttattttgcctaaacataattttttttgctgct
tttttatttgatcataCTGCCATAGCTTAACCTGCATTctcttttttcag
aaattctGTTCCCAAGTATTTATTGGAAAGATACCAAGAGACATGTATGA
AGATGAATTGGTTCCGCTGTTTGAGCCTTATGGTCAAATCTATGATTTAC
GTATTATGGTTGATCCTTTTAGTGGACTGAACAAAGGTTATGCATTTGTT
ACATACAGTACCAAAGAAGGAGCACAAAGTTCTGTCAAAGCTATGGAGAA
CCATGAAGTAAGAGGTGGGAAAAAGCTTGGTGTTTGTCTTTCACAAGCAA
ATAACAGACTCTTTGTTGGATCTATTCCTAAGACAAAAACCAAACAAGAT
ATCATGGAAGAATTTAAGACCAAAGTTGAGGAGTTGACAGATGTTATTAT
GTACTTTTCTGCAgaggataaaaataaaaacagaggTTTTGCTTTCCTTG
ACTTTGCCACACACAAAGATGCTGCTCAGGCAagacgaaaattgcaaagt
gggCGTATCAAGGTTTTTGGACACATTACTCCAGCTGTTGATTGGGCTGA
TTCCATGGATGAACCAAATGATGAAGTCATGTCTAAGGTAAGAGATTAGA
TCATTTTTAGTAATTATCTCCATTTGGTGTTGCAGCCTCATTGAATTATT
CAATTTGATAGCTTTCCTTGCTTTAACTTGGTTGTAATCAGGCTAATTAT
TGTATAATGTATAAATAAGGCTGGCTTTTGATAGCTCAAGGTGTAAAATG
ACAGCGAACCACTCAAATTTCTTCCCCATTATACTCCTAATCATCATTTG
AATTGCTTCCATTTTCCATTTTTGTCACAAAGAACACAATTACAATACAA
GTGCTTTATTTATGCCctgaagttaaaaaaattaatatttaggGTTTACA
CCGCCAAAGTCAgcaatattttattaaaaaatcccAAACTTATTGATGTG
AATAACCAAGAATATTGaagttttgcggaatttaattttgcgatttAAAG
GGCCAAATTTGCATTAATTAATTCTGCATTAGTTAATTTTGCATTTATTT
GTTCCCTCAAGGCAATACTGATCTGCTATTTTAGTAGTATAGTTCAGTTT
ATACATAGTTTGCGCCCCCTTTTTTTAATGGGGCGGGATGCTAGATTTTT
GGGGGGCCTTTGAAGGGGTTACCAAAATGTGCCTAAATTTTTTGGGtggg
aatgtaggggggggtcaaaaaagaaaaggggGTTTGGAAAATCTGGTCAA
CTCAATAATTTACATATAGTCGAAGTCcgttttaaagtaaaattatGTAC
CACCAAAATACAAAAGTGTATAATGttaatcaaaatattatttatatGTA
ATGGTTATCGACAAAAAgagaacgagaaaaatataACCAATATTGTACGA
GTGAAAGTctttgtgttttgtttataCTTCCTGTATTTTGGTGAAATTAA
CATCAAAACATGCGAAATTGATTAGAATTTTCATTAAACAGTACAAAACA
CTCTTAATTGACCTGACttgacaatttttttgtgatttgagAGGAAAACG
AAAACATTTCTGGGAATAAATTTTGGTAAAAGATACGACAAGAAAGTTCA
AATTATGACCTCTCActtaccagaccccttttttgAAAACGCtgtcttgt
atttgtacggtacaatatgaaGTACAGGATTTATGTAAGCATTttaagcc
aatcagattgcttatatttttcatgttgatgataaATAATGTTATATCTT
GAAATTGTTGCATTTTGGACTCTTTGAtcattttttttgggggggggggg
caagattgcattacaaaagggggatgaaataaacctagggggttcatacc
cctctgcaaactctGTTATAgcaatcatttttcatttctttttaggTGAA
AGTTGTCTATGTCAGACATTTATCTCCAGCCATCGACGAAAACAAATTGA
ATGAACTTTTCGAACAATATGGTCCTGTTGAGAAAGTGAAAAAGATTAAG
GATTATGCTTTCATTAACTTTGCTAACAGGGATGATGCAATGAGAGCTAT
TGAGGAACTTGATAACCAAGAATTGGACGATTTAAAAATTTCAGTACAAC
TTGCTAAACCTCAAGTAGATAAAACAGGTCAACGACGTGGGCAATCTGGG
TTTGGTGCTCTTAACAAAAAGGGTGAGTCTGACAATTTTGTCCCCAGAGG
AAGAGGTGGTTTTTCTGGTCGTGGAGCTGGTGGCCCAAGAGGGCGTGGAA
GAGGAGGATTTGGAGGTGGTTTCTCACATGGAGGGAACTACTCTCAAGGT
GGATATAGAGGTTATGGAGATGACTCTTATGATGACTACTATGCACCACC
AGCCAGACCTCGTGGTGGTCCACCAAGCCGTGGCCCAAGTCGTGGTGGAG
CAATGAGAGGGGGAAGAGGTAGTCCTCGAGGAGGTTCAACTGGTGGTTTC
CGTGGTGCTTCCAGAGGTGGATCATCTAGAGGTGGTACTTATGGACAGCA
AAGAGGAGGAATGAACAGAGGGCGTGGTGGCTTTGGACGAGGAGGTTCAG
ACTATGGATCAGGCAGAGGTGGATCAAGAGGAGGTACTGGTGGTTATGGC
TCAAGAGGACGTGGTGCTGGGGCACCAAAAAGGAAAGCAGATTATGGTGG
TGATTATGGCACCCCCTCTAAACGTAAGAATGAGTGGAACTCCCAACCCA
TTGCCCAACAACCCCTTGGTAACTCATCCAGCAACTATTACAATGATGAC
TACAGTGGCGGTGACTGGTACACAGATTTATCTGAGCCCAGATGGCAATA
AAAATCTTTTctcaaaaacacaagaaaaaggcATACACCAAATATTTGGa
tttaaaactctaaaacaagGCATTGctttaaaactgaaaaaccAATGAag
cattgatttttttcaagGATAACAACGATCACTAAATTAACCTCACGAAG
AGTCAAAACGATTCAAATCTGTACAATTGTAAATTTactgaaagattttt
aaaagcTTTCTATGATTTGAGAGGAAACTGAGAGATTAAAACAAGGACAC
AAAAGCTCATAAGTTCATACTTGTACAGCCAAAATTTgctgttttatttt
ataaaaaaatgtaaaaactggATGGTGCTTATGTGGTGTTGTCgaaatgt
aaaaatatttctttgcatCATTTTACAGGTTTCGCTAACAAAGAAcatat
atttttagtttttaataaACAAAACTTTAGTTCATTCTCTTTCTTAAATA
AAGTGTTGATTTAtgaaaacctttctttttggGGTttgtaaaattcaaat
ttcgaatCAAAGTCTTTGTCTCTTTTGCTTATTCAAAATAAGCTGACTCC
TTTAatttaaatgttaaaaaaattctttacagGGATTCAAATATATtcca
aatttcatgtcgaagtgattgttttatcaaaaaaaaggaAACTAGAAAAG
GAGATTGTTTTTTACTATTATGTGTCCCTCTGAATTTTATTTATCTTTAA
AAATGGTGACTTAAAATTGAGAATACCTTTNAAGTGAAAAAGATTAAGGA
TTATGCTTTCATTAACTTTGCTAACAGGGATGATGCAATGAGAGCTATTG
AGGAACTTGATAACCAAGAATTGGACGATTTAAAAATTTCAGTACAACTT
GCTAAACCTCAAGTAGATAAAACAGGTCAACGACGTGGGCAATCTGGGTT
TGGTGCTCTTAACAAAAAGGGTGAGTCTGACAATTTTGTCCCCAGAGGAA
GAGGTGGTTTTTCTGGTCGTGGAGCTGGTGGCCCAAGAGGGCGTGGAAGA
GGAGGATTTGGAGGTGGTTTCTCACATGGAGGGAACTACTCTCAAGGTGG
ATATAGAGGTTATGGAGATGACTCTTATGATGACTACTATGCACCACCAG
CCAGACCTCGTGGTGGTCCACCAAGCCGTGGCCCAAGTCGTGGTGGAGCA
ATGAGAGGGGGAAGAGGTAGTCCTCGAGGAGGTTCAACTGGTGGTTTCCG
TGGTGCTTCCAGAGGTGGATCATCTAGAGGTGGTACTTATGGACAGCAAA
GAGGAGGAATGAACAGAGGGCGTGGTGGCTTTGGACGAGGAGGTTCAGAC
TATGGATCAGGCAGAGGTGGATCAAGAGGAGGTACTGGTGGTTATGGCTC
AAGAGGACGTGGTGCTGGGGCACCAAAAAGGAAAGCAGATTATGGTGGTG
ATTATGGCACCCCCTCTAAACGTAAGAATGAGTGGAACTCCCAACCCATT
GCCCAACAACCCCTTGGTAACTCATCCAGCAACTATTACAATGATGACTA
CAGTGGCGGTGACTGGTACACAGATTTATCTGAGCCCAGATGGCAATAAA
AATCTTTTctcaaaaacacaagaaaaaggcATACACCAAATATTTGGatt
taaaactctaaaacaagGCATTgcttaaaaactgaaaaaccaATGAagca
ttgatttttttcaagGATAACAACGATCACTAAATTAACCTCACGAAGAG
TCAAAACGATTCAAATCTGTACAATTGTAAATTTactgaaagatttttaa
aagcTTTCTATGATTTGAGAGGAAACTGAGAGATTAAAACAAGGACACAA
AAGCTCATAAGTTCATACTTGTACAGCCAAAATTTgctgttttattttat
aaaaaaatgtaaaaactggATGGTGCTTATGTGGTGTTGTCgaaatgtaa
aaatatttctttgcatCATTTTACAGGTTTCGCTAACAAAGAAcatatat
ttttagtttttaataaACAAAACTTTAGTTCATTCTCTTTCTTAAATAAA
GTGTTGATTTAtgaaaacctttctttttggGGTttgtaaaattcaaattt
cgaatCAAAGTCTTTGTCTCTTTTGCTTATTCAAAATAAGCTGACTCCTT
TAatttaaatgttaaaaaaattctttacagGGATTCAAATATATtccaaa
tttcatgtcgaagtgattgttttatcaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047739-exon-scaffold_136-1491911889:8314..8993 | TCONS_00047739-exon-scaffold_136-1491911889:8314..8993 | Clytia hemisphaerica | exon |
| TCONS_00047739-exon-scaffold_136-1510915933:8314..8993 | TCONS_00047739-exon-scaffold_136-1510915933:8314..8993 | Clytia hemisphaerica | exon |
| TCONS_00047739-exon-scaffold_136-1575043694:8314..8993 | TCONS_00047739-exon-scaffold_136-1575043694:8314..8993 | Clytia hemisphaerica | exon |
| TCONS_00047739-exon-scaffold_136-1491911889:17864..18400 | TCONS_00047739-exon-scaffold_136-1491911889:17864..18400 | Clytia hemisphaerica | exon |
| TCONS_00047739-exon-scaffold_136-1510915933:17864..18400 | TCONS_00047739-exon-scaffold_136-1510915933:17864..18400 | Clytia hemisphaerica | exon |
| TCONS_00047739-exon-scaffold_136-1575043694:17864..18400 | TCONS_00047739-exon-scaffold_136-1575043694:17864..18400 | Clytia hemisphaerica | exon |
| TCONS_00047739-exon-scaffold_136-1491911889:19709..20682 | TCONS_00047739-exon-scaffold_136-1491911889:19709..20682 | Clytia hemisphaerica | exon |
| TCONS_00047739-exon-scaffold_136-1510915933:19709..20682 | TCONS_00047739-exon-scaffold_136-1510915933:19709..20682 | Clytia hemisphaerica | exon |
| TCONS_00047739-exon-scaffold_136-1575043694:19709..20682 | TCONS_00047739-exon-scaffold_136-1575043694:19709..20682 | Clytia hemisphaerica | exon |
| TCONS_00047739-exon-scaffold_136-1491911889:22186..22793 | TCONS_00047739-exon-scaffold_136-1491911889:22186..22793 | Clytia hemisphaerica | exon |
| TCONS_00047739-exon-scaffold_136-1510915933:22186..22793 | TCONS_00047739-exon-scaffold_136-1510915933:22186..22793 | Clytia hemisphaerica | exon |
| TCONS_00047739-exon-scaffold_136-1575043694:22186..22793 | TCONS_00047739-exon-scaffold_136-1575043694:22186..22793 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_136 | supercontig | scaffold_136:8314..22793 + |
Blast
BLAST of TCONS_00047739 vs. Swiss-Prot (Human)
Match: HNRPQ (Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens GN=SYNCRIP PE=1 SV=2) HSP 1 Score: 437.187 bits (1123), Expect = 9.687e-141 Identity = 224/420 (53.33%), Postives = 298/420 (70.95%), Query Frame = 3
Query: 207 HSSMYDNLLGQGVNPSLAAKLDEIHQQGLLQVDELDDRALEALKEFTEEDALNVLGQFMKSDLTHVQNKSAFLCGVMKTYRAKMKLKSEEAATNPSASTSVTPXXXXXTEDGKKGPNEDKVKQLLNRTGYTLDITTGQRKYXXXXXXXXXXXXXXXEKKFCSQVFIGKIPRDMYEDELVPLFEPYGQIYDLRIMVDPFSGLNKGYAFVTYSTKEGAQSSVKAMENHEVRGGKKLGVCLSQANNRLFVGSIPKTKTKQDIMEEFKTKVEELTDVIMYFSAEDKNKNRGFAFLDFATHKDAAQARRKLQSGRIKVFGHITPAVDWADSMDEPNDEVMSKVKVVYVRHLSPAIDENKLNELFEQYGPVEKVKKIKDYAFINFANRDDAMRAIEELDNQELDDLKISVQLAKPQVDKTGQRRGQ 1466
HS + LL G+ +A KLDEI+ GL+ +LD+RA+EALKEF E+ AL VL QF SDL+HVQNKSAFLCGVMKTYR + K ++ A D KGP+E K+K LL RTGYTLD+TTGQRKYGGPPP + +++F+GKIPRD++EDELVPLFE G I+DLR+M+DP +GLN+GYAFVT+ TKE AQ +VK NHE+R GK +GVC+S ANNRLFVGSIPK+KTK+ I+EEF E LTDVI+Y +DK KNRGF FL++ HK AAQARR+L SG++KV+G++ V+WAD +++P+ EVM+KVKV++VR+L+ + E L + F Q+G +E+VKK+KDYAFI+F RD A++A+EE++ ++L+ I + AKP K +R+ Q
Sbjct: 23 HSENFQTLLDAGLPQKVAEKLDEIYVAGLVAHSDLDERAIEALKEFNEDGALAVLQQFKDSDLSHVQNKSAFLCGVMKTYRQREKQGTKVA-------------------DSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQ---QPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG-TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQ 419
The following BLAST results are available for this feature:
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