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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047735 ID=TCONS_00047735|Name=TCONS_00047735|organism=Clytia hemisphaerica|type=transcript|length=2341bp
AGGAAAGGTGTACAAAACAATTTCTTACGTGTTTATATATCTATGTATAG
TTTGAGCTGAAAGATTGATCTGAGAAAAGATTTCTGTTGGTGTTAACAAC
ATGAAAAGAAGTttggaaaatgatttttcaatgaTATTCGTCTCATCGTG
AAAAATCAATATTAGTTATTGAAGAAAAGTGAACATATATATGAAAAGGG
TAAATGGAATAGAAAACGAACGAATGAAAAATTCTATGTTATGTTGGCTT
TTACCTTTTAAACTCTGTAGTTGTGGCAGACATATGTAACAGAGACAGAG
TTGAATATAAGACAACTTTTTTACGGCTGCAAAAGCTTGATTGGGAATGG
CGTTTCTTAACGCAGAATCGATGTTCTACGCGCATCAAATGAAGAAATAT
CAGCAAGAGACCCATACCAGGCATCAAAAATTGAACAAGACAGTTGAGAA
GAAAACTGAGAACTCGAAGAAAAACGAAAACGTACAAACTTCAACAGAAA
CTACAAACATCAATGACAATGATAGCAGTAGCAGAAAGAACAGTAATTTA
TTACTTGATAAAATTCGAGAGTTGCTTTCAAAAGGAAACTCGTCACACAA
AACAGGGGACTTTTCAAACGGACAAGAAAATGAAGATAGCAAATTCCAAT
TCAATCCTCTTATATTAGTAGCCTCATTTCTTGCATTTCTATCTTCCTTA
TTCAACAAGAGAAAAGACCACCTTGATGAGAGGCATGTACCAGCAATACC
TTTTCAACGACACATGTCATTCAACCAAAAAGTTGCACACATTCTCTCCC
AAGACGAGAATTTAAAGTACTATTTACACCTCGAGCAGAATCGATTTCCA
ACCTTTTTTAAACGTACGTCATCACAGACAAGTTGCAGCAGTAGTAAAAG
CTCACACACGAATGACGAAAAAGAACAGATggtagaaaacgaaagtgaac
gTAAAGCGATCCAACAAAATAGACTTGAACGCCTTGAGCAAGGGTTTTTT
AATTATGCATTGGATAGAACTATACATGTAGAACAGCGATTGAAGACCAG
AACAGGTGGCAAGGAACGTGAAAATTCACTAACTCAGGAAGAATCGACAT
CTCCCAGATTCAACCACGAGCCTTCGTCCATGTTCAGACCGCCTAAGAAA
GACGATAGCAAAGAAGACAATTTATCTGAGTTGAGAATCAAGGAAGCTGA
GATAACAGACTCGAGTGACTCACAGGAGGGATTCTTTACACCGACCAGGG
GGAGTCCCTTAGAAGGAATAGGAACCAAAAACACTGTCGATTCTCCTGTT
CAACTCAACCTAGAAGAGGAAGAAGCTTTAGAACAAGCGAGGCAAATCTT
CCATGCTGTAATGGATGATCAAGACGAACCAGAAGCGACTAAACAAAAGA
GACAAACACCTGAAATTTTATCGGATGAACGAGACAACGGAAAACAAGTC
CCATCCATGTCGAGTGAGGACGAAAAAATGAATCGCAAAATGTCGAGCAA
GCGTGAAGATAGGTTTTCAAATGAAGGAAACCCAGGGTCATCAAAAACAT
CAGATGGTCAAAATTATATcgtaataaatgaaaaaatgatcGCTCTTATg
aaaccagtcgaaccaaacgAACGATCAACATCACCTTTTGAAGCAATTTC
ATTGGATGTTAACCAGCATCAAATAATTCCATCTGCCGATCGATTACGTC
ATTTACAATCTCCACCAATGTCGAGGTCGTTGTCAAATACATCATCTATG
GCGTCATCACCCTTCGAGCCAATTTCGGTCAGTGAGATTAACGATGACAT
ATCTtcaacatcatcatcatcttcttTTGAAGATGTTTCTTTTTTCATGT
CCGAAAATTAAAAGACTGATGAGAGGTGTCCGAAAATTAATTCAGAgtct
caaaacatattttttttcgcgTCTGATTGTTTGTAACTTTTAGTTAGGTT
TTTTAAATGAATATGAAAACTGTTTCTTGAAACTCCTTACAAAGGCGTTA
GACACTTGTAGCTCTCCTAAAAAACGTAAACTATTTTTTTGCTCATTTAA
CCCCGGTGTCAGACCTTGGAACTaaagaaaagttttaatttCCTCTGTAC
TCAACATTCTTTTAGTGATAGCAATTGTGTAAGCAATCATTGATTGACAA
GTCTAGTCTATTATACCATAGTAAACCatgtcgttgtatttcgctacAGC
TTACGATTGCATTGGACTACGTTCACCACTCCCCAACGGCAATTTatctt
tttcataagaacttTAAGCAatattcccgcgttcctgtcccagctggcac
acaacgttttttcgacgtttatctaacgtttacAACGTACA Run BLAST on NCBI protein sequence of TCONS_00047735-protein >TCONS_00047735-protein ID=TCONS_00047735-protein|Name=TCONS_00047735-protein|organism=Clytia hemisphaerica|type=polypeptide|length=504bp
MAFLNAESMFYAHQMKKYQQETHTRHQKLNKTVEKKTENSKKNENVQTST
ETTNINDNDSSSRKNSNLLLDKIRELLSKGNSSHKTGDFSNGQENEDSKF
QFNPLILVASFLAFLSSLFNKRKDHLDERHVPAIPFQRHMSFNQKVAHIL
SQDENLKYYLHLEQNRFPTFFKRTSSQTSCSSSKSSHTNDEKEQMVENES
ERKAIQQNRLERLEQGFFNYALDRTIHVEQRLKTRTGGKERENSLTQEES
TSPRFNHEPSSMFRPPKKDDSKEDNLSELRIKEAEITDSSDSQEGFFTPT
RGSPLEGIGTKNTVDSPVQLNLEEEEALEQARQIFHAVMDDQDEPEATKQ
KRQTPEILSDERDNGKQVPSMSSEDEKMNRKMSSKREDRFSNEGNPGSSK
TSDGQNYIVINEKMIALMKPVEPNERSTSPFEAISLDVNQHQIIPSADRL
RHLQSPPMSRSLSNTSSMASSPFEPISVSEINDDISSTSSSSSFEDVSFF
MSEN Run BLAST on NCBI transcript from alignment at scaffold_135:101007..103347 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047735 ID=TCONS_00047735|Name=TCONS_00047735|organism=Clytia hemisphaerica|type=transcript|length=2341bp|location=Sequence derived from alignment at scaffold_135:101007..103347 (Clytia hemisphaerica)
TGTACGTTgtaaacgttagataaacgtcgaaaaaacgttgtgtgccagct
gggacaggaacgcgggaatatTGCTTAaagttcttatgaaaaagatAAAT
TGCCGTTGGGGAGTGGTGAACGTAGTCCAATGCAATCGTAAGCTgtagcg
aaatacaacgacatGGTTTACTATGGTATAATAGACTAGACTTGTCAATC
AATGATTGCTTACACAATTGCTATCACTAAAAGAATGTTGAGTACAGAGG
aaattaaaacttttctttAGTTCCAAGGTCTGACACCGGGGTTAAATGAG
CAAAAAAATAGTTTACGTTTTTTAGGAGAGCTACAAGTGTCTAACGCCTT
TGTAAGGAGTTTCAAGAAACAGTTTTCATATTCATTTAAAAAACCTAACT
AAAAGTTACAAACAATCAGAcgcgaaaaaaaatatgttttgagacTCTGA
ATTAATTTTCGGACACCTCTCATCAGTCTTTTAATTTTCGGACATGAAAA
AAGAAACATCTTCAAaagaagatgatgatgatgttgaAGATATGTCATCG
TTAATCTCACTGACCGAAATTGGCTCGAAGGGTGATGACGCCATAGATGA
TGTATTTGACAACGACCTCGACATTGGTGGAGATTGTAAATGACGTAATC
GATCGGCAGATGGAATTATTTGATGCTGGTTAACATCCAATGAAATTGCT
TCAAAAGGTGATGTTGATCGTTcgtttggttcgactggtttcATAAGAGC
gatcattttttcatttattacgATATAATTTTGACCATCTGATGTTTTTG
ATGACCCTGGGTTTCCTTCATTTGAAAACCTATCTTCACGCTTGCTCGAC
ATTTTGCGATTCATTTTTTCGTCCTCACTCGACATGGATGGGACTTGTTT
TCCGTTGTCTCGTTCATCCGATAAAATTTCAGGTGTTTGTCTCTTTTGTT
TAGTCGCTTCTGGTTCGTCTTGATCATCCATTACAGCATGGAAGATTTGC
CTCGCTTGTTCTAAAGCTTCTTCCTCTTCTAGGTTGAGTTGAACAGGAGA
ATCGACAGTGTTTTTGGTTCCTATTCCTTCTAAGGGACTCCCCCTGGTCG
GTGTAAAGAATCCCTCCTGTGAGTCACTCGAGTCTGTTATCTCAGCTTCC
TTGATTCTCAACTCAGATAAATTGTCTTCTTTGCTATCGTCTTTCTTAGG
CGGTCTGAACATGGACGAAGGCTCGTGGTTGAATCTGGGAGATGTCGATT
CTTCCTGAGTTAGTGAATTTTCACGTTCCTTGCCACCTGTTCTGGTCTTC
AATCGCTGTTCTACATGTATAGTTCTATCCAATGCATAATTAAAAAACCC
TTGCTCAAGGCGTTCAAGTCTATTTTGTTGGATCGCTTTAcgttcacttt
cgttttctaccATCTGTTCTTTTTCGTCATTCGTGTGTGAGCTTTTACTA
CTGCTGCAACTTGTCTGTGATGACGTACGTTTAAAAAAGGTTGGAAATCG
ATTCTGCTCGAGGTGTAAATAGTACTTTAAATTCTCGTCTTGGGAGAGAA
TGTGTGCAACTTTTTGGTTGAATGACATGTGTCGTTGAAAAGGTATTGCT
GGTACATGCCTCTCATCAAGGTGGTCTTTTCTCTTGTTGAATAAGGAAGA
TAGAAATGCAAGAAATGAGGCTACTAATATAAGAGGATTGAATTGGAATT
TGCTATCTTCATTTTCTTGTCCGTTTGAAAAGTCCCCTGTTTTGTGTGAC
GAGTTTCCTTTTGAAAGCAACTCTCGAATTTTATCAAGTAATAAATTACT
GTTCTTTCTGCTACTGCTATCATTGTCATTGATGTTTGTAGTTTCTGTTG
AAGTTTGTACGTTTTCGTTTTTCTTCGAGTTCTCAGTTTTCTTCTCAACT
GTCTTGTTCAATTTTTGATGCCTGGTATGGGTCTCTTGCTGATATTTCTT
CATTTGATGCGCGTAGAACATCGATTCTGCGTTAAGAAACGCCATTCCCA
ATCAAGCTTTTGCAGCCGTAAAAAAGTTGTCTTATATTCAACTCTGTCTC
TGTTACATATGTCTGCCACAACTACAGAGTTTAAAAGGTAAAAGCCAACA
TAACATAGAATTTTTCATTCGTTCGTTTTCTATTCCATTTACCCTTTTCA
TATATATGTTCACTTTTCTTCAATAACTAATATTGATTTTTCACGATGAG
ACGAATAtcattgaaaaatcattttccaaACTTCTTTTCATGTTGTTAAC
ACCAACAGAAATCTTTTCTCAGATCAATCTTTCAGCTCAAACTATACATA
GATATATAAACACGTAAGAAATTGTTTTGTACACCTTTCCT Coding sequence (CDS) from alignment at scaffold_135:101007..103347 >TCONS_00047735 ID=TCONS_00047735|Name=TCONS_00047735|organism=Clytia hemisphaerica|type=CDS|length=1515bp|location=Sequence derived from alignment at scaffold_135:101007..103347 (Clytia hemisphaerica)
TTAATTTTCGGACATGAAAAAAGAAACATCTTCAAaagaagatgatgatg
atgttgaAGATATGTCATCGTTAATCTCACTGACCGAAATTGGCTCGAAG
GGTGATGACGCCATAGATGATGTATTTGACAACGACCTCGACATTGGTGG
AGATTGTAAATGACGTAATCGATCGGCAGATGGAATTATTTGATGCTGGT
TAACATCCAATGAAATTGCTTCAAAAGGTGATGTTGATCGTTcgtttggt
tcgactggtttcATAAGAGCgatcattttttcatttattacgATATAATT
TTGACCATCTGATGTTTTTGATGACCCTGGGTTTCCTTCATTTGAAAACC
TATCTTCACGCTTGCTCGACATTTTGCGATTCATTTTTTCGTCCTCACTC
GACATGGATGGGACTTGTTTTCCGTTGTCTCGTTCATCCGATAAAATTTC
AGGTGTTTGTCTCTTTTGTTTAGTCGCTTCTGGTTCGTCTTGATCATCCA
TTACAGCATGGAAGATTTGCCTCGCTTGTTCTAAAGCTTCTTCCTCTTCT
AGGTTGAGTTGAACAGGAGAATCGACAGTGTTTTTGGTTCCTATTCCTTC
TAAGGGACTCCCCCTGGTCGGTGTAAAGAATCCCTCCTGTGAGTCACTCG
AGTCTGTTATCTCAGCTTCCTTGATTCTCAACTCAGATAAATTGTCTTCT
TTGCTATCGTCTTTCTTAGGCGGTCTGAACATGGACGAAGGCTCGTGGTT
GAATCTGGGAGATGTCGATTCTTCCTGAGTTAGTGAATTTTCACGTTCCT
TGCCACCTGTTCTGGTCTTCAATCGCTGTTCTACATGTATAGTTCTATCC
AATGCATAATTAAAAAACCCTTGCTCAAGGCGTTCAAGTCTATTTTGTTG
GATCGCTTTAcgttcactttcgttttctaccATCTGTTCTTTTTCGTCAT
TCGTGTGTGAGCTTTTACTACTGCTGCAACTTGTCTGTGATGACGTACGT
TTAAAAAAGGTTGGAAATCGATTCTGCTCGAGGTGTAAATAGTACTTTAA
ATTCTCGTCTTGGGAGAGAATGTGTGCAACTTTTTGGTTGAATGACATGT
GTCGTTGAAAAGGTATTGCTGGTACATGCCTCTCATCAAGGTGGTCTTTT
CTCTTGTTGAATAAGGAAGATAGAAATGCAAGAAATGAGGCTACTAATAT
AAGAGGATTGAATTGGAATTTGCTATCTTCATTTTCTTGTCCGTTTGAAA
AGTCCCCTGTTTTGTGTGACGAGTTTCCTTTTGAAAGCAACTCTCGAATT
TTATCAAGTAATAAATTACTGTTCTTTCTGCTACTGCTATCATTGTCATT
GATGTTTGTAGTTTCTGTTGAAGTTTGTACGTTTTCGTTTTTCTTCGAGT
TCTCAGTTTTCTTCTCAACTGTCTTGTTCAATTTTTGATGCCTGGTATGG
GTCTCTTGCTGATATTTCTTCATTTGATGCGCGTAGAACATCGATTCTGC
GTTAAGAAACGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047735-exon-scaffold_135-1491911889:101007..103347 | TCONS_00047735-exon-scaffold_135-1491911889:101007..103347 | Clytia hemisphaerica | exon |
| TCONS_00047735-exon-scaffold_135-1510915933:101007..103347 | TCONS_00047735-exon-scaffold_135-1510915933:101007..103347 | Clytia hemisphaerica | exon |
| TCONS_00047735-exon-scaffold_135-1575043694:101007..103347 | TCONS_00047735-exon-scaffold_135-1575043694:101007..103347 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_135 | supercontig | scaffold_135:101007..103347 . |
Blast
The following BLAST results are available for this feature:
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