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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047733 ID=TCONS_00047733|Name=TCONS_00047733|organism=Clytia hemisphaerica|type=transcript|length=2679bp
gttttgatttccattgaagaatcttattctggttttcatgttactagatg
ctgttttagagctttagagctagcctgtaaGGAGCATGATACTTCACAAA
GATGTGTTTCCAagtatttgatttttgattttcttaaagTATCAAATGTA
TGTAACTGTAACTCATTTTATTGGTCAGTATTTGCTAAAAAACTGAACCA
TTTGTTTACAAGTCTTCCCAAAGTTGCTGGGCATTTTAATCACTTAAGAA
AAAGAGTAATGATTTTAACTTGTACATCGTCCAattcaaaatatgtttta
attttagaaGTGAACAAACatcaaaaacacttaaaaacatgaaaataaat
gATAAAGGCTTATCAGCCTACAGCAGTTGTAGAAGGGGAACAGACAAAGA
GGGTTTCCTCTTCAAAAAAGGTGCAGACCTAAGTCATAGTTATAAAAGGC
GTTGGTTTGTCTTGAAAGGCAATcttctgttttattttgataagtCAAAT
GATCGTCAACCTATTGGAATGATCATCTTAGAAAATTGTAGTGTAGAAGT
AAGTGATGCTGACCGCTTCTCCTTTTGTATACGATTTCAATCACTACAAG
CTTCCACCTCAAGAACTTATACCTTATGTGCAGATAATGAAACTGACATG
GAACGCTGGATGAAAAGTATCACCTCAGCTTCCTATGGATATTTAGACAT
GCTTGTAAAAGAATTTGAGAAGAATTTGCAACGTTTAAAGGCTTTAGAAG
CAGCTGCGAATAATGATTTTGCAGCTCTTTCACAAGAGCAAAACACCAGT
GAAGTACTCTTATCTAAAGCAAAACCCTTACTAGATCACACATACACTAT
TAACTCTCTAGCACAATCTCCTAAAGCTCCTCCAAGGAGATCAAAACATT
CAGATGCTGGTGCATTAGTGAAGGAAAAAGTTGCAAAAGTATCCACAGTG
ACtcgaatgaaaacaaaaagtttatcTGTTAAACATGTTAACCATTCTAG
TAGCTCAGATAATATAGCTCGAGAGAAGAGTCCTAATACTGGGCGCAAAA
CAATTAAAGGAAACCGTGTTTCAGCACCTAGTCAAGAACTTgtgaaaaag
aataacatattATTACCAGATGTAGAACAGGATAATGACAAGACCACTTT
TGAACAATTACATACATATTTTGGTGGTGCAATATGGACTAGGATTGGTG
AAACTCTATAAGTGCATTGATATTTAGGATTATTAATAggagtttttaaa
atttgactatAATATAAATGCTGTAATTTTTAATAGTTTTCAGCCTGAAA
AGCTGATAACAGAGTACTCCTAGGTTTATCTATAAATTCCATTCGTTATG
CTTGTTGCTTGGACTCAAATTTTGTGTAATACAGGTAGGTGGCCGGAGCT
TCCAAAGCTATGAAATACCAAACGATTTTGTAATGAATGTCAGCCATTTT
TCCATCAAATACCAGAATACCAATACCTAAATATGTGAAGCCCCTCTATA
AGCCAAAAGAGCATAAAAAACTGCTTGGATGAATATTATGTTGTTTTTAC
CTCTCCCTATTTAGATAATGGAAAAGGTAATTACCATGAAATTGACTATT
TAATtaaatgtatatattttttgttaccgggatgaattatatttttgtac
tGTAAAATGAACTGaataattgaatttttaaaattttccttagTGTACTt
atcaataatttcaaaaagtttaaaaatgttttattgtatgtaaaattttt
gataagattttcaaaacgGGATACACTtccatttgaaaaagtttcaccac
acaattagaatttaatttaaaatgttatatattttattttcactttatac
gattttttttttgcaaaaccagaatgaaagaaattggagattaatatttt
aacaaaattagttttttgtaggtgaaaaacattatttttggacctatttt
TCATTCTTTGTGATGATTGCAACTACGCAATTCAACCATTCTAAAATTCC
ATTCTAAAATTACTTTTTGCTacaaaatcagcaatttttagGCTCTTGCT
TCACCCTTACTTAGGAGTACACAAATGATGTCAACCTACGTACTACTATC
CAATGAACGTTCTTTTCGAGGCTTAGAATTTGTATTAATTTCAGTGGTTT
TCATACTGTTCCCtattgttggacctaccccggtgtgcaggttttttaga
ctttgtgaaaaattggatcattaattttttctgattttttgcatgaaagt
agggtaccatcataggtatagatggctcaagcagatttttgcaaaaaaat
tttgttggctcaaaaaacgcatgtttatctataagaatcactattaataa
gcatacatcaaagttcttagtcaaattattaaattttttttatgagacaa
atgttttttttgctcatgagggcttacttttgaaaaatatgtgtttagac
atgaaattttggttgcttgacatgtttttatagaaaaactggcccaattc
gatatttttttataagcacattatcaattacttaggtattagcttttctc
gagattggctctttcattctttatgattttttcctcaaagatgcataact
ataaaccttcgaatgtaacggagctcgatttttgaaaaataatttttggg
gtaaatttcagctaaaaaacggctaaaaa Run BLAST on NCBI protein sequence of TCONS_00047733-protein >TCONS_00047733-protein ID=TCONS_00047733-protein|Name=TCONS_00047733-protein|organism=Clytia hemisphaerica|type=polypeptide|length=290bp
MKINDKGLSAYSSCRRGTDKEGFLFKKGADLSHSYKRRWFVLKGNLLFYF
DKSNDRQPIGMIILENCSVEVSDADRFSFCIRFQSLQASTSRTYTLCADN
ETDMERWMKSITSASYGYLDMLVKEFEKNLQRLKALEAAANNDFAALSQE
QNTSEVLLSKAKPLLDHTYTINSLAQSPKAPPRRSKHSDAGALVKEKVAK
VSTVTRMKTKSLSVKHVNHSSSSDNIAREKSPNTGRKTIKGNRVSAPSQE
LVKKNNILLPDVEQDNDKTTFEQLHTYFGGAIWTRIGETL Run BLAST on NCBI transcript from alignment at scaffold_135:69287..71965 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047733 ID=TCONS_00047733|Name=TCONS_00047733|organism=Clytia hemisphaerica|type=transcript|length=2679bp|location=Sequence derived from alignment at scaffold_135:69287..71965 (Clytia hemisphaerica)
tttttagccgttttttagctgaaatttaccccaaaaattatttttcaaaa
atcgagctccgttacattcgaaggtttatagttatgcatctttgaggaaa
aaatcataaagaatgaaagagccaatctcgagaaaagctaatacctaagt
aattgataatgtgcttataaaaaaatatcgaattgggccagtttttctat
aaaaacatgtcaagcaaccaaaatttcatgtctaaacacatatttttcaa
aagtaagccctcatgagcaaaaaaaacatttgtctcataaaaaaaattta
ataatttgactaagaactttgatgtatgcttattaatagtgattcttata
gataaacatgcgttttttgagccaacaaaatttttttgcaaaaatctgct
tgagccatctatacctatgatggtaccctactttcatgcaaaaaatcaga
aaaaattaatgatccaatttttcacaaagtctaaaaaacctgcacaccgg
ggtaggtccaacaataGGGAACAGTATGAAAACCACTGAAATTAATACAA
ATTCTAAGCCTCGAAAAGAACGTTCATTGGATAGTAGTACGTAGGTTGAC
ATCATTTGTGTACTCCTAAGTAAGGGTGAAGCAAGAGCctaaaaattgct
gattttgtAGCAAAAAGTAATTTTAGAATGGAATTTTAGAATGGTTGAAT
TGCGTAGTTGCAATCATCACAAAGAATGAaaaataggtccaaaaataatg
tttttcacctacaaaaaactaattttgttaaaatattaatctccaatttc
tttcattctggttttgcaaaaaaaaaatcgtataaagtgaaaataaaata
tataacattttaaattaaattctaattgtgtggtgaaactttttcaaatg
gaAGTGTATCCcgttttgaaaatcttatcaaaaattttacatacaataaa
acatttttaaactttttgaaattattgataAGTACActaaggaaaatttt
aaaaattcaattattCAGTTCATTTTACagtacaaaaatataattcatcc
cggtaacaaaaaatatatacatttaATTAAATAGTCAATTTCATGGTAAT
TACCTTTTCCATTATCTAAATAGGGAGAGGTAAAAACAACATAATATTCA
TCCAAGCAGTTTTTTATGCTCTTTTGGCTTATAGAGGGGCTTCACATATT
TAGGTATTGGTATTCTGGTATTTGATGGAAAAATGGCTGACATTCATTAC
AAAATCGTTTGGTATTTCATAGCTTTGGAAGCTCCGGCCACCTACCTGTA
TTACACAAAATTTGAGTCCAAGCAACAAGCATAACGAATGGAATTTATAG
ATAAACCTAGGAGTACTCTGTTATCAGCTTTTCAGGCTGAAAACTATTAA
AAATTACAGCATTTATATTatagtcaaattttaaaaactccTATTAATAA
TCCTAAATATCAATGCACTTATAGAGTTTCACCAATCCTAGTCCATATTG
CACCACCAAAATATGTATGTAATTGTTCAAAAGTGGTCTTGTCATTATCC
TGTTCTACATCTGGTAATaatatgttattctttttcacAAGTTCTTGACT
AGGTGCTGAAACACGGTTTCCTTTAATTGTTTTGCGCCCAGTATTAGGAC
TCTTCTCTCGAGCTATATTATCTGAGCTACTAGAATGGTTAACATGTTTA
ACAgataaactttttgttttcattcgaGTCACTGTGGATACTTTTGCAAC
TTTTTCCTTCACTAATGCACCAGCATCTGAATGTTTTGATCTCCTTGGAG
GAGCTTTAGGAGATTGTGCTAGAGAGTTAATAGTGTATGTGTGATCTAGT
AAGGGTTTTGCTTTAGATAAGAGTACTTCACTGGTGTTTTGCTCTTGTGA
AAGAGCTGCAAAATCATTATTCGCAGCTGCTTCTAAAGCCTTTAAACGTT
GCAAATTCTTCTCAAATTCTTTTACAAGCATGTCTAAATATCCATAGGAA
GCTGAGGTGATACTTTTCATCCAGCGTTCCATGTCAGTTTCATTATCTGC
ACATAAGGTATAAGTTCTTGAGGTGGAAGCTTGTAGTGATTGAAATCGTA
TACAAAAGGAGAAGCGGTCAGCATCACTTACTTCTACACTACAATTTTCT
AAGATGATCATTCCAATAGGTTGACGATCATTTGacttatcaaaataaaa
cagaagATTGCCTTTCAAGACAAACCAACGCCTTTTATAACTATGACTTA
GGTCTGCACCTTTTTTGAAGAGGAAACCCTCTTTGTCTGTTCCCCTTCTA
CAACTGCTGTAGGCTGATAAGCCTTTATcatttattttcatgtttttaag
tgtttttgatGTTTGTTCACttctaaaattaaaacatattttgaatTGGA
CGATGTACAAGTTAAAATCATTACTCTTTTTCTTAAGTGATTAAAATGCC
CAGCAACTTTGGGAAGACTTGTAAACAAATGGTTCAGTTTTTTAGCAAAT
ACTGACCAATAAAATGAGTTACAGTTACATACATTTGATActttaagaaa
atcaaaaatcaaatactTGGAAACACATCTTTGTGAAGTATCATGCTCCt
tacaggctagctctaaagctctaaaacagcatctagtaacatgaaaacca
gaataagattcttcaatggaaatcaaaac Coding sequence (CDS) from alignment at scaffold_135:69287..71965 >TCONS_00047733 ID=TCONS_00047733|Name=TCONS_00047733|organism=Clytia hemisphaerica|type=CDS|length=873bp|location=Sequence derived from alignment at scaffold_135:69287..71965 (Clytia hemisphaerica)
TTATAGAGTTTCACCAATCCTAGTCCATATTGCACCACCAAAATATGTAT
GTAATTGTTCAAAAGTGGTCTTGTCATTATCCTGTTCTACATCTGGTAAT
aatatgttattctttttcacAAGTTCTTGACTAGGTGCTGAAACACGGTT
TCCTTTAATTGTTTTGCGCCCAGTATTAGGACTCTTCTCTCGAGCTATAT
TATCTGAGCTACTAGAATGGTTAACATGTTTAACAgataaactttttgtt
ttcattcgaGTCACTGTGGATACTTTTGCAACTTTTTCCTTCACTAATGC
ACCAGCATCTGAATGTTTTGATCTCCTTGGAGGAGCTTTAGGAGATTGTG
CTAGAGAGTTAATAGTGTATGTGTGATCTAGTAAGGGTTTTGCTTTAGAT
AAGAGTACTTCACTGGTGTTTTGCTCTTGTGAAAGAGCTGCAAAATCATT
ATTCGCAGCTGCTTCTAAAGCCTTTAAACGTTGCAAATTCTTCTCAAATT
CTTTTACAAGCATGTCTAAATATCCATAGGAAGCTGAGGTGATACTTTTC
ATCCAGCGTTCCATGTCAGTTTCATTATCTGCACATAAGGTATAAGTTCT
TGAGGTGGAAGCTTGTAGTGATTGAAATCGTATACAAAAGGAGAAGCGGT
CAGCATCACTTACTTCTACACTACAATTTTCTAAGATGATCATTCCAATA
GGTTGACGATCATTTGacttatcaaaataaaacagaagATTGCCTTTCAA
GACAAACCAACGCCTTTTATAACTATGACTTAGGTCTGCACCTTTTTTGA
AGAGGAAACCCTCTTTGTCTGTTCCCCTTCTACAACTGCTGTAGGCTGAT
AAGCCTTTATcatttattttcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00047733-exon-scaffold_135-1491911889:69287..71965 | TCONS_00047733-exon-scaffold_135-1491911889:69287..71965 | Clytia hemisphaerica | exon |
| TCONS_00047733-exon-scaffold_135-1510915933:69287..71965 | TCONS_00047733-exon-scaffold_135-1510915933:69287..71965 | Clytia hemisphaerica | exon |
| TCONS_00047733-exon-scaffold_135-1575043694:69287..71965 | TCONS_00047733-exon-scaffold_135-1575043694:69287..71965 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_135 | supercontig | scaffold_135:69287..71965 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00047733 vs. Swiss-Prot (Human)
Match: SESQ1 (Sesquipedalian-1 OS=Homo sapiens GN=FAM109A PE=1 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 3.751e-35 Identity = 60/135 (44.44%), Postives = 95/135 (70.37%), Query Frame = 3
Query: 339 MKINDKGLSAYSSCRRGTDKEGFLFKKGADLSHSYKRRWFVLKGNLLFYFDKSNDRQPIGMIILENCSVE-VSDADRFSFCIRFQSLQASTSRTYTLCADNETDMERWMKSITSASYGYLDMLVKEFEKNLQRLK 740
MK+N++ L+ Y++C D GFL+KKG + +Y RRWFVL+GN+LFYF+ + R+P+G+IILE C+VE V A+ F+F +RF +A RTY L A+++ ME W+K+++ AS+ YL ++V+E E+ L ++
Sbjct: 1 MKLNERSLAFYATCDAPVDNAGFLYKKGGRHA-AYHRRWFVLRGNMLFYFEDAASREPVGVIILEGCTVELVEAAEEFAFAVRFAGTRA---RTYVLAAESQDAMEGWVKALSRASFDYLRLVVRELEQQLAAVR 131
The following BLAST results are available for this feature:
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