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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047724 ID=TCONS_00047724|Name=TCONS_00047724|organism=Clytia hemisphaerica|type=transcript|length=1559bp
ATCTCCGTAGGGtgctttctttaaaattttcctgTTTAAATGATGATTCT
GAAACTATTCCTCACGTTTTGAGGTACAGATCTTAACCTATTAGTAGagt
ctttgtttttgtttgctgTGTTATTGGATTGATTTTCCGAACGAAAGCCG
AAAAATGCCTGGTGGAAAACGAAAGACAGAAGATACAGAGAACTTGATCA
GCAAAAAACCATACAGTGCTGATGCAAATATCAAAAGTAAATTTGAGTTG
ATGGCAGAAAGTTTTGAAGAAAATGACCAATCAAAAGTTGAACAGATTGA
TAGCGACAAAGCACCATACGTCGTTTTAGTCGGAAATGTCGGAAGTGGAA
AATCAACCATCGTCGAAAAATTGACAGGAGAAAAAGGTCGGAGTTCTTCG
TCAGCAGAAAGTGCAACAAGAGCTGCCGAATATTTCTGGACACCTGATCA
AAGGCTTCTCATCGCTGACACTCCAGGAACCAACCCTCGAAAGGATAAAC
TGGGGCATAACAAAGAAATTGCTGCAGCATTGAGTTATCAAGAAGTATCT
AAATTTCTGATCGTTNGGAGCACAACAATGAAATTGCTGCAGCATTGAGT
TATCGAGAAGTTTCTAAATTTCTGATCGTCGCTAAAGCGCATGTGCGAAT
GGATCAAACGATCAGTGAAATTAAGCAATACAGTGATCGATTTGTTGAAC
TTCCAGATGATTTGGTAGGTGTCATGGTAACACATATGGACATCGACAAA
GAATGGCNCGCATGTGCGAATGGATCAAACGATCAGTGAAATTAAGCAAT
ACAGTGATCGATTTGTTGAACTTCCAGATGATTTGGTAGGTGTCATGGTA
ACCCATATGGACATCGACAAAGAATGGAGTAAAGAAGACATTACTGAGAT
TCTCGTTGACGATTATGAGCTACCTGACATTGTTTTTTCGCATCAACAAA
AAAAGGGAAATGATCTTTGCCAAGATATCTTGAAAATTTGCGATACCAGT
TACCTAATCGACGTTGGAAGCAGTTTATTTTCACAGCTATTTAGCTTCAG
AGAGAGTaatcgaaaaatattgaaagtgaCCAATGACTTTGTCAAACGAT
TCAAGTTACTGAAAGAAAGTTTTAACAATGAAAGAACGGCCTTTGAGGGG
AGAGAACAGCTGATTATTCATTGTGAATTTTGGGCTTTGTTTCAAAGTTA
TTTGATTGTAATGGCaaaagaagaaatgaaaaacGAATTAGATTTTGATT
ATAATGTAACGGAAGGTGATCTTCAACAAGGATATGTAGTCAACATGACC
AACCAAATTGAAGCTGTCATGGACGACATTCGCCTTTACATTCAACGCCA
CCAGAGTCGGAAAGCTTCAGTAAGATGTTGCTCTCACTGTGGAAAAACTT
GGAATAACGCGGACGTCGAAACATGTGGAATGTCAAACCAAGGAAACCTG
AACAACAATGTAACTCCCTGGGCAATGGCAAATTTTACTTTTGAGGTATT
AAAGGGCACGATTAAAATCTCCAAAGAAGGGCTTTCTACAAGAAATTCCT
CCAGCTGCG Run BLAST on NCBI protein sequence of TCONS_00047724-protein >TCONS_00047724-protein ID=TCONS_00047724-protein|Name=TCONS_00047724-protein|organism=Clytia hemisphaerica|type=polypeptide|length=263bp
MDQTISEIKQYSDRFVELPDDLVGVMVTHMDIDKEWSKEDITEILVDDYE
LPDIVFSHQQKKGNDLCQDILKICDTSYLIDVGSSLFSQLFSFRESNRKI
LKVTNDFVKRFKLLKESFNNERTAFEGREQLIIHCEFWALFQSYLIVMAK
EEMKNELDFDYNVTEGDLQQGYVVNMTNQIEAVMDDIRLYIQRHQSRKAS
VRCCSHCGKTWNNADVETCGMSNQGNLNNNVTPWAMANFTFEVLKGTIKI
SKEGLSTRNSSSC Run BLAST on NCBI transcript from alignment at scaffold_135:59135..61196+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047724 ID=TCONS_00047724|Name=TCONS_00047724|organism=Clytia hemisphaerica|type=transcript|length=2062bp|location=Sequence derived from alignment at scaffold_135:59135..61196+ (Clytia hemisphaerica)
ATCTCCGTAGGGtgctttctttaaaattttcctgTTTAAATGATGATTCT
GAAACTATTCCTCACGTTTTGAGGTACAGATCTTAACCTATTAGTAGagt
ctttgtttttgtttgctgTGTTATTGGATTGATTTTCCGAACGAAAGCCG
AAAAATGCCTGGTGGAAAACGAAAGACAGAAGATACAGAGAACTTGATCA
GCAAAAAACCATACAGTGCTGATGCAAATATCAAAAGTAAATTTGAGTTG
ATGGCAGAAAGTTTTGAAGGTAAGCAACACCATATTAACCgtctaaatat
aaaaaaagatttgttaAAGTTAGACCgttccaaatttttgaaaattctca
taaaaaaagacgCTAAAGTAATGTATTCGCGAAAGATATTAgagcaaaat
ttcataatattATCAAAGGAACTATTTGTTATAATAGAAGCATTTATATG
TCTGAATATCCCTGCCTCgcagccccagtggaactttaTCCCACAGTGGT
GACAAagatttctatcaaaatcccaGTGGGGATTTTATTGTTCCCAAACT
TAAATTATTCAGTGTGGATAGTTTTGTACAGCAATTTCGCATTGAATTTC
GAAAGGGAATGAAGTCAAAGTCCACTACCCAgtagggctgaaattgtagg
gtattttgtcCACCGGGGATGCTTAGGAACATACTCTTTAAACTTTTAGA
AAATGACCAATCGAATANAATTGTAGAGTATTTTATTCGGGGATGCTTAG
GAAAATACTCTTAAACTTTTAGAAAATGACCAATCAAAAGTTGAACAGAT
TGATAGCGACAAAGCACCATACGTCGTTTTAGTCGGAAATGTCGGAAGTG
GAAAATCAACCATCGTCGAAAAATTGACAGGAGAAAAAGGTCGGAGTTCT
TCGTCAGCAGAAAGTGCAACAAGAGCTGCCGAATATTTCTGGACACCTGA
TCAAAGGCTTCTCATCGCTGACACTCCAGGAACCAACCCTCGAAAGGATA
AACTGGGGCATAACAAAGAAATTGCTGCAGCATTGAGTTATCAAGAAGTA
TCTAAATTTCTGATCGTTNGGAGCACAACAATGAAATTGCTGCAGCATTG
AGTTATCGAGAAGTTTCTAAATTTCTGATCGTCGCTAAAGCGCATGTGCG
AATGGATCAAACGATCAGTGAAATTAAGCAATACAGTGATCGATTTGTTG
AACTTCCAGATGATTTGGTAGGTGTCATGGTAACACATATGGACATCGAC
AAAGAATGGCNCGCATGTGCGAATGGATCAAACGATCAGTGAAATTAAGC
AATACAGTGATCGATTTGTTGAACTTCCAGATGATTTGGTAGGTGTCATG
GTAACCCATATGGACATCGACAAAGAATGGAGTAAAGAAGACATTACTGA
GATTCTCGTTGACGATTATGAGCTACCTGACATTGTTTTTTCGCATCAAC
AAAAAAAGGGAAATGATCTTTGCCAAGATATCTTGAAAATTTGCGATACC
AGTTACCTAATCGACGTTGGAAGCAGTTTATTTTCACAGCTATTTAGCTT
CAGAGAGAGTaatcgaaaaatattgaaagtgaCCAATGACTTTGTCAAAC
GATTCAAGTTACTGAAAGAAAGTTTTAACAATGAAAGAACGGCCTTTGAG
GGGAGAGAACAGCTGATTATTCATTGTGAATTTTGGGCTTTGTTTCAAAG
TTATTTGATTGTAATGGCaaaagaagaaatgaaaaacGAATTAGATTTTG
ATTATAATGTAACGGAAGGTGATCTTCAACAAGGATATGTAGTCAACATG
ACCAACCAAATTGAAGCTGTCATGGACGACATTCGCCTTTACATTCAACG
CCACCAGAGTCGGAAAGCTTCAGTAAGATGTTGCTCTCACTGTGGAAAAA
CTTGGAATAACGCGGACGTCGAAACATGTGGAATGTCAAACCAAGGAAAC
CTGAACAACAATGTAACTCCCTGGGCAATGGCAAATTTTACTTTTGAGGT
ATTAAAGGGCACGATTAAAATCTCCAAAGAAGGGCTTTCTACAAGAAATT
CCTCCAGCTGCG Coding sequence (CDS) from alignment at scaffold_135:59135..61196+ >TCONS_00047724 ID=TCONS_00047724|Name=TCONS_00047724|organism=Clytia hemisphaerica|type=CDS|length=789bp|location=Sequence derived from alignment at scaffold_135:59135..61196+ (Clytia hemisphaerica)
ATGGATCAAACGATCAGTGAAATTAAGCAATACAGTGATCGATTTGTTGA
ACTTCCAGATGATTTGGTAGGTGTCATGGTAACCCATATGGACATCGACA
AAGAATGGAGTAAAGAAGACATTACTGAGATTCTCGTTGACGATTATGAG
CTACCTGACATTGTTTTTTCGCATCAACAAAAAAAGGGAAATGATCTTTG
CCAAGATATCTTGAAAATTTGCGATACCAGTTACCTAATCGACGTTGGAA
GCAGTTTATTTTCACAGCTATTTAGCTTCAGAGAGAGTaatcgaaaaata
ttgaaagtgaCCAATGACTTTGTCAAACGATTCAAGTTACTGAAAGAAAG
TTTTAACAATGAAAGAACGGCCTTTGAGGGGAGAGAACAGCTGATTATTC
ATTGTGAATTTTGGGCTTTGTTTCAAAGTTATTTGATTGTAATGGCaaaa
gaagaaatgaaaaacGAATTAGATTTTGATTATAATGTAACGGAAGGTGA
TCTTCAACAAGGATATGTAGTCAACATGACCAACCAAATTGAAGCTGTCA
TGGACGACATTCGCCTTTACATTCAACGCCACCAGAGTCGGAAAGCTTCA
GTAAGATGTTGCTCTCACTGTGGAAAAACTTGGAATAACGCGGACGTCGA
AACATGTGGAATGTCAAACCAAGGAAACCTGAACAACAATGTAACTCCCT
GGGCAATGGCAAATTTTACTTTTGAGGTATTAAAGGGCACGATTAAAATC
TCCAAAGAAGGGCTTTCTACAAGAAATTCCTCCAGCTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047724-exon-scaffold_135-1491911889:59135..59403 | TCONS_00047724-exon-scaffold_135-1491911889:59135..59403 | Clytia hemisphaerica | exon |
| TCONS_00047724-exon-scaffold_135-1510915933:59135..59403 | TCONS_00047724-exon-scaffold_135-1510915933:59135..59403 | Clytia hemisphaerica | exon |
| TCONS_00047724-exon-scaffold_135-1575043694:59135..59403 | TCONS_00047724-exon-scaffold_135-1575043694:59135..59403 | Clytia hemisphaerica | exon |
| TCONS_00047724-exon-scaffold_135-1491911889:59907..61196 | TCONS_00047724-exon-scaffold_135-1491911889:59907..61196 | Clytia hemisphaerica | exon |
| TCONS_00047724-exon-scaffold_135-1510915933:59907..61196 | TCONS_00047724-exon-scaffold_135-1510915933:59907..61196 | Clytia hemisphaerica | exon |
| TCONS_00047724-exon-scaffold_135-1575043694:59907..61196 | TCONS_00047724-exon-scaffold_135-1575043694:59907..61196 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_135 | supercontig | scaffold_135:59135..61196 + |
Blast
The following BLAST results are available for this feature:
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