TCONS_00047707 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047707
Unique NameTCONS_00047707
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1350

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047707 ID=TCONS_00047707|Name=TCONS_00047707|organism=Clytia hemisphaerica|type=transcript|length=1350bp
attgttgttagtatttgtttgttttattgacCCACATCCAGCACTTTCAT
TATGGGTGTATTGGTGAGCAAAAACAAGAACGAAAATCAAGTTAATAGTA
ATTCCTCCTCGACTATATCATCCACGCCTTCAAATGCAGACACACCAAGA
ACTCAACAGGCTAAAGAAGCCAAGAAAAGTCAAAAGAAGAAGGAGAAAAG
CGACCAGATTCTTACCAAACTTCTGAATGGTGATCTGACCATTGATGTAC
CGTCTCAAGCGAAATTAATTCGTATTTATATCAGTGCTAATTCAAAAGAT
ACCACGGCTGAACGAAATGCATTGATGACGAGAGTATATCCAAAGTTGAA
AGAATATTGTCAATCCACTGGATATGATTTTCAAGTGGTGGACATGAGAT
GGGGTGTACGTGACGAAGCTACCGCTGACCATATGACGTCAGAATTGTGT
ATGAAAGAATTGCAATTGTGTCAAGATATTTCTGCGGGCCCAAGTTTTGT
CTCCTTTCTTTCTCACAAATACGGTTACCGACCATTTCCGCCGAAAATTG
TCGCCACCGAATTCGAAACGATGTTGAAAGTCGTTGAAGAACAAACCGAC
AAAGATCTCCTTCAGAAATGGTTTCTGAAAGACGACAATTCAATCCCTGA
AATGTACATCTTACAACCTATTACAGAAGTTTTACCAAATTATGAAAATC
CTGAAGCGAGTAAAAAACAGCGTTCTAAGGCAACCGGGGAATGGTTTAAA
TCATTCAACCAAATGCAATTGGTTTTGAGAGATGCATCTAATAAAGTTTT
AAGTGAAGAAGATGCAATCAAATATTCTATTTCAGTAACCGAAAATGAAA
TCGAGCAAGGATGCAGTGAAATCAAGAACCCTGATGATTCTGCTCATTGG
TTCAACAGAACCATCATGGACATAGCACGTTACCAAGACGACAAAGCTTC
TAGAATGTTTATCGATAAAAATGGTCaagaaattgaccaaaatgCAATTG
ATTTAGTCAACGATTTACGTGAGAACAAACTCCCATCTATGCTTTCCTCC
AATAGTATCACGACTTATGATTTGTCATGGTTGCCAGAGTTTGGTGTGGA
CCCAGAACAATCTGAACTTCATAAAGAATATTTGGATAAATTGTGTGTGG
ATTTCGAACGTATTATGAAAGAGAAGATTGACCGGTGTATCGCTAAAAGA
GACAATTCACTTAGTGATGACGAAGTAGTCGGTGAGATTATTCACCATCA
ATCTTTCTGTCGTCAAAAAGTGTCGGAATTTACGGGCCGTCGTAAACTAT
TGATGAAGATACTTCCATTGTTGGATGATGATGACGAGGATGAGGAAgag
Run BLAST on NCBI

transcript from alignment at scaffold_134:84269..89885-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047707 ID=TCONS_00047707|Name=TCONS_00047707|organism=Clytia hemisphaerica|type=transcript|length=5617bp|location=Sequence derived from alignment at scaffold_134:84269..89885- (Clytia hemisphaerica)
ATTGTTGTTAGTATTTGTTTGTTTTATTGACCCACATCCAGCACTTTCAT
TATGGGTGTATTGGTGAGCAAAAACAAGAACGAAAATCAAGTTAATAGTA
ATTCCTCCTCGACTATGTAAGTAAAAAACCTTTTTAGAGGAAAGTGTGAA
GTGGTAGATAGTCTGAGAACTGTTGGCCATTTTATTTGATCATTAGCCTC
AGAATTTCAACCATCCTGGACATTTTCGCCGTATCAAAAACCGTCGAAAA
TGTTTTGTCAGATCCGGTACTAGTGGTTCCTTTGACAGTTATAATTGTCT
CGCTAAATTGAACATTAATTATTCGGGCATTTGTATATATCGAATTCTCT
GTTTGTTTTGAAATAGCGAGGGTTAGCTGTATCACAGGAATCGAACCATC
TAACGGATTATCCGGTCAAGACATTTCACCATTGTTTGCTTGAGTGCACC
TTTGTATTTGTAACTACATGCAGGACTTTGATAGACACCCCTGTGTCACA
GACCCGTTGGGACCCCAGCCCCACTAAAAAATTTAGCAAAAATTTCTTCC
ACGGTGAGAAAATACCCTTGAATTTCAGCCCCACTGGGAAATTGACTTTG
ATTTCATCCCCACTCAAAATTCCATATTTAAAAATGCACTCCAAAACTAA
TCTTGGAACATTATAATTTTTATCCCCATTGGGATTTCAATAGGAATTTT
CCCCACTGAGGAAAAAAGTTCCACCGGGGCTGCGAGACAGGGTTGTTTAT
AGGTTAAATGATATCAAATGTCTGTAGTCGTTGTTCAGTGGCGTGGTGGG
AAAATTTCTCTGGGGTGGCCAAGGCAAATGTGGCGCCCTTTTTAAAGATT
TTTTTTTTTTGGCGCCCCTCTCTATACGCTCATTATGAACACAAAAAAGG
AAGTGTGCGAGCGAAGCGAGCCAGAAAATTTTGAGTTTTTGAGGCGATGA
GGGGCGCCATTTTTGTTTTTTCATTTGTCAATCTTTCGATATGGGCGCCT
GAAAAATCCTTCTTGGCGTCCCTTATTTTTGGGCGCCCCTTCTCAAAAGG
GCTCCACCACGCCACTGATTGTACTAAAGCATTCATTGATATTAACTGAC
CCTTTTAAGTTTGAATCCAGACCCCTTGTAGACTTGATAGGTGTATTGTT
TTACAGGAACTTTCATTTTGTCCATAGATCATCCACGCCTTCAAATGCAG
ACACACCAAGAACTCAACAGGCTAAAGGTAATGGAAGTGGTTTTTTAACC
CAATTATTTTTTTACCCTTTGACTATCTTTCCTTTTTCATATCAATGAAA
TCTTGAGGCGTTAACCAATGAAGTATGAAGGGCTAGAATCGAATCTCCTT
GGTAGGATTTGAAGCCAACAAATCCTACCAAAGTTGCGTGGCCTAGCGCG
GCCCTCCTTGTTTTTACACAAATGGTAGATTGAAACTAAAATTTACCGAT
AAATTTTGAAAAAATATCACTCGAAAACAAAAGAATTACTAGATTCAATA
CGTCGTCAAAAATACGGCGCATATTTTAAGGCTTCACTTTTTCTTGCCTG
AGAAAGGTTAGAGATTCGATTCTAGCCCTTCGGGCTTATACTTCATTGGG
ACTCTCCATGAATGTAAATTTGAAATTTGGTCAGAAACCAGTCCGTAAAA
CACACACCCTTTTCCAGAATGGATGAATTACTAAAGCTTATGAGTTTAAA
TTTGGATCAGCCATGGGTCTTGATTATATGATAATAATTATATGACAATG
TGCAAAATTTCAAGTCTGACACATGCATTGTTGGTACATACAGCGTAATA
TTGCTTTAATTTTGATATATAAGCTTTTTTTGACAGATTTTTCTAAATCA
TATGACAAGAATATTCAAAATTATTGATACATTTTTTAGAAGCCAAGAAA
AGTCAAAAGAAGAAGGAGAAAAGCGACCAGATTCTTACCAAACTTCTGAA
TGGTGATCTGACCATTGATGTACCGTCTCAAGCGAAATTAATTCGTATTT
ATATCAGTGCTAATTCAAAAGGTCTGTGATTTTTCCTTGTTATGTGGTCT
TACCTGGCCAACCAGTTTTTTTCGAATAACGGATCTATCCGATATCATTG
TTGCCAATTCATTTGAGTTGCGTGTCCCTGTTTCCTTCTGAGGGTATCGG
CAAATGTGATCTGGTTGCCCAGTAAGGGTATACCATGTGCCCTCTAGTGA
CCGCCCAGCAATCCGTGGGGAAAGGTCAATTTGTTAGGTATCTAAATTAA
GTGACACAAGCAATTAATACATACAAAACACTTTAAAAAAACAGTTTTAA
GTCTTGTACTGTAAAGTGAGGATGTTGAGGAGTAAATTGAACTTACCTAT
AATTAATGGGGTGTATAATTGATAATGATAATATCCTTGAACAGAATCGG
CTGAAAATCAAATGATGAATGAAAAAAAATTAGAACATGTCATCTTTCCA
TATTTGCCTTGTCGTTTTATCTACTATTTTATGCGAAAAGTTGCATTCTA
AGTTCTATTCAAAAGAGACATGAATAGTAACACATTGTTGGAAAGATCAC
TTTGATTGGACGGTTTTTAAAGGGACATTAAAGTAGTAAACTGTAAACAT
TGCGCGAACCACGTGTCATTAAAGAGAACAATTAAAATCACGAGTCCAAA
ACAAACTTTGTAAAACAATTGAACTATCAAAATTAGCCATATTTGGCTTG
ATGATTTATTTTGACATGTGATATTTGTTTTGATTTTGTATCCGCTGCAT
ACAGTTTGTTTACAAATTTCGCAAGTATTGTTATGTCCCTTTAAGGCATA
CCAGAAGTTAAAAAGATTCATCATTCTATGTATGACATAAACATTTTTTA
AGAACATCCAAAATTTAAGCTTGCTTAACTTTTTGAGTTCTCAAGTTTTC
CTAAAGTGTTCTTAGAATGTCCTTAATTTCATCAACCCATTCTGTGAGTG
TTTTTGCGCAATTTTCTAAGAAATTGGGTGTTCTGGAGTCCATGAATCCT
TCAAGGGTTCGTAAGATGTTCCTGATATTCTGGTCATCGAAGCTTTATGT
TCTCATATAGTAAAAACGCGGAATCTTTAAAAATTAATGATTAATAATTT
TTACAGTCAACCAAAAATATATCATACTTAGATACCACGGCTGAACGAAA
TGCATTGATGACGAGAGTATATCCAAAGTTGAAAGAATATTGTCAATCCA
CTGGATATGATTTTCAAGTGGTGGACATGAGATGGGGTGTACGTGACGAA
GCTACCGCTGACCATATGACGTCAGAATTGTGTATGAAAGAATTGCAATT
GTGTCAAGATATTTCTGCGGGCCCAAGTTTTGTCGTAAGTATTTCATAGT
CTTTATTTTGGTTGTTTCAAAATGTTGCAAGTTTATGCTTTTGAAATATG
AAGATTCTGCGAATAATCTTGAAAATCTAAACTTTAAACTATAATGAGAG
GGAAAACTTGGTATAAATTTTCAAATTTTGTTCTTAGGTTATATTTAGCT
CGAAGATTTCTTTAAATAATTCTCATTTTTGAGAAAAAGATAAAGAAAAA
TGAACTGACTTAATTGTATTGATAATCATACTTGATGTTGCAGAATCATC
TACAGTTGACGCTCTTTAACTCGAACCTCTACACCGTTTTTTTTATAAGA
ACATCCAAAAATTTTGAAGCCTTCGGAAACTTCGTAACTTTTTTAGTTTT
AAGCCTAAAAATGTTCTTAACATGTTCTTTTACCATTGTGAGTATTTTTG
TCCATTTTCTTAAGAAATTGGCCATTTTAGAGTCCACAAAGTCTTAAAAT
GTTCTTAACTTTCGGCCATCGAAGCCTTATGTTCTTATATAGTTTGTTCC
TATAAAAAAACGTGTATAACTCGAATGTCTTCTTAACTCAAACAAGTTTT
CTCATCCCTTCAATTGACAATAAGGGATTACTCCATAAGCTTACTCCATA
TACTTACTCCATAAGCTTACTCCATAAGCTTACTCCATATCTCGGAATTT
CCTTAATTCGAACAAATTTGCGATCCCCGTGCGTGCTCGAGTTATGGAAA
CTCACTGTATGTTAAAATTTGTTCCTTTTTCAGTCCTTTCTTTCTCACAA
ATACGGTTACCGACCATTTCCGCCGAAAATTGTCGCCACCGAATTCGAAA
CGATGTTGAAAGTCGTTGAAGAACAAACCGACAAAGATCTCCTTCAGAAA
TGGTTTCTGAAAGACGACAATTCAATCCCTGAAATGTACATCTTACAACC
TATTACAGAAGTTTTACCAAATTATGAAAATCCTGAAGCGAGTAAAAAAC
AGCGTTCTAAGGCAACCGGGGAATGGTTTAAATCATTCAACCAAATGCAA
TTGGTTTTGAGAGATGCATCTAATAAAGTTTTAAGTGAAGAAGATGCAAT
CAAATATTCTATTTCAGGTATATTGACCTTTATTCCTAAAAATTTCAATA
AATACTGCACAATTGGCTATATATTTCGCGAAGACTGTGGTCCTTGGGAA
CTGGCTCTTGAAGTGCGGTTTGTAAGAGATATAAGTGACGTTCAAAAAAG
TTATGGATCAATCCTTAACAACGTGGGCGACTTGTGTAGTTTAAATTGGG
AATCTCTATTCAACATACGATAGCAGTATCTAAAACAAACTAAGTCACAA
CCCCGTTCCACATTATTTGGCTCTTAATTCATTCTTTCTGTCTGTCTGCC
TGTCGTTTTTTATTTTAAATCGCAATCTATTAAAATTTCAATATTGCAAT
TTTTCAGTAACCGAAAATGAAATCGAGCAAGGATGCAGTGAAATCAAGAA
CCCTGATGATTCTGCTCATTGGTTCAACAGAACCATCATGGACATAGCAC
GTTACCAAGACGACAAAGCTTCTAGAATGTTTATCGATAAAAATGGTCAA
GAAATTGACCAAAATGCAATTGATTTAGTCAACGATTTACGTGAGAACAA
ACTCCCATCTATGCTTTCCTCCAATAGTATCACGACTTATGATTTGTCAT
GGTTGCCAGAGTTTGGTGTGGACCCAGAACAATCTGAACTTCATAAAGAA
TATTTGGATAAATTGTGTGTGGATTTCGAACGTATTATGAAAGAGAAGAT
TGACCGGTGTATCGCTAAAAGGTACAAAGCCAGTTGTTTGAAATTACGAT
TGTATGTTAGCAAATGTGTTGTCCTAGCTGCACTCTTGTATCTTGCATGT
TGGCGTATCCAAAGTTACAAGAAAATTAACATGATCTTTATTTTAATTGG
AAAGGGAGAGGCTCGTTATTACACATTTTGTAATACAAAAAATAAGTATA
TAGAACGTACGGGTCCGAGGCGAAAAGAAATACGGGCCATAGTAAAAACA
ATTTTAAGGCTTTTGTGGTTCTTTTTAGATGGTCTGGAAACGTTAGTTAA
ACAGTCTCATTGAGAACATTCGAATACTTTTTGAAATTTTAACATATTTT
TTCGTTTTCCCCACAGAGACAATTCACTTAGTGATGACGAAGTAGTCGGT
GAGATTATTCACCATCAATCTTTCTGTCGTCAAAAAGTGTCGGAATTTAC
GGGCCGTCGTAAACTATTGATGAAGATACTTCCATTGTTGGATGATGATG
ACGAGGATGAGGAAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030385XLOC_030385Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047707-exon-scaffold_134-1575043694:89770..89885TCONS_00047707-exon-scaffold_134-1575043694:89770..89885Clytia hemisphaericaexon
TCONS_00047707-exon-scaffold_134-1575043694:88659..88708TCONS_00047707-exon-scaffold_134-1575043694:88659..88708Clytia hemisphaericaexon
TCONS_00047707-exon-scaffold_134-1575043694:87865..87996TCONS_00047707-exon-scaffold_134-1575043694:87865..87996Clytia hemisphaericaexon
TCONS_00047707-exon-scaffold_134-1575043694:86552..86754TCONS_00047707-exon-scaffold_134-1575043694:86552..86754Clytia hemisphaericaexon
TCONS_00047707-exon-scaffold_134-1575043694:85469..85802TCONS_00047707-exon-scaffold_134-1575043694:85469..85802Clytia hemisphaericaexon
TCONS_00047707-exon-scaffold_134-1575043694:84765..85128TCONS_00047707-exon-scaffold_134-1575043694:84765..85128Clytia hemisphaericaexon
TCONS_00047707-exon-scaffold_134-1575043694:84269..84419TCONS_00047707-exon-scaffold_134-1575043694:84269..84419Clytia hemisphaericaexon
TCONS_00047707-exon-scaffold_134-1510915933:89770..89885TCONS_00047707-exon-scaffold_134-1510915933:89770..89885Clytia hemisphaericaexon
TCONS_00047707-exon-scaffold_134-1510915933:88659..88708TCONS_00047707-exon-scaffold_134-1510915933:88659..88708Clytia hemisphaericaexon
TCONS_00047707-exon-scaffold_134-1510915933:87865..87996TCONS_00047707-exon-scaffold_134-1510915933:87865..87996Clytia hemisphaericaexon
TCONS_00047707-exon-scaffold_134-1510915933:86552..86754TCONS_00047707-exon-scaffold_134-1510915933:86552..86754Clytia hemisphaericaexon
TCONS_00047707-exon-scaffold_134-1510915933:85469..85802TCONS_00047707-exon-scaffold_134-1510915933:85469..85802Clytia hemisphaericaexon
TCONS_00047707-exon-scaffold_134-1510915933:84765..85128TCONS_00047707-exon-scaffold_134-1510915933:84765..85128Clytia hemisphaericaexon
TCONS_00047707-exon-scaffold_134-1510915933:84269..84419TCONS_00047707-exon-scaffold_134-1510915933:84269..84419Clytia hemisphaericaexon
TCONS_00047707-exon-scaffold_134-1491911889:89770..89885TCONS_00047707-exon-scaffold_134-1491911889:89770..89885Clytia hemisphaericaexon
TCONS_00047707-exon-scaffold_134-1491911889:88659..88708TCONS_00047707-exon-scaffold_134-1491911889:88659..88708Clytia hemisphaericaexon
TCONS_00047707-exon-scaffold_134-1491911889:87865..87996TCONS_00047707-exon-scaffold_134-1491911889:87865..87996Clytia hemisphaericaexon
TCONS_00047707-exon-scaffold_134-1491911889:86552..86754TCONS_00047707-exon-scaffold_134-1491911889:86552..86754Clytia hemisphaericaexon
TCONS_00047707-exon-scaffold_134-1491911889:85469..85802TCONS_00047707-exon-scaffold_134-1491911889:85469..85802Clytia hemisphaericaexon
TCONS_00047707-exon-scaffold_134-1491911889:84765..85128TCONS_00047707-exon-scaffold_134-1491911889:84765..85128Clytia hemisphaericaexon
TCONS_00047707-exon-scaffold_134-1491911889:84269..84419TCONS_00047707-exon-scaffold_134-1491911889:84269..84419Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_134supercontigscaffold_134:84269..89885 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.301308	0	0	0	0	0	0	0	0	0.216791	0	0	2.92253	2.49543	0.298863	1.43915	0	0.492175	4.95643	9.08469	0	0	0.634262	0.433382	0.000233007	2.99097	0.199659	0.519174	0.230638	0
Blast
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BLAST of TCONS_00047707 vs. Swiss-Prot (Human)
Match: NWD2 (NACHT and WD repeat domain-containing protein 2 OS=Homo sapiens GN=NWD2 PE=2 SV=3)

HSP 1 Score: 140.198 bits (352), Expect = 5.613e-35
Identity = 108/372 (29.03%), Postives = 192/372 (51.61%), Query Frame = 1 
Query:  223 LNGDLTIDVPSQ----AKLIRIYISANSKDTTAERNALMTRVYPKLKEYC-QSTGYDFQVVDMRWGVRDEATADHMTSELCMKELQLCQDISAGPSFVSFLSHKYGYRPFPPKIVATEFETML-KVVEEQTDKDLLQKWFLKDDNSIPEMYILQPITEVLPNYENP-EASKKQRSKATGEWFKSFNQMQLVLRDASNKVLSEEDAIKYS------ISVTENEIEQGCSEIKNPD--DSAHWFNRTIMDIARYQDDKASRMFIDKNGQEI----DQNAIDLVNDLRENKLPSMLSSNSITTYDLSWLPEFGVDPEQSELHKEYLDKLCVDFERIMKEKIDRCIAKRDNSLSDDEVVGEIIHHQSFCRQKVSEF 1281
             +G+LT  +PS      + +R++ISAN +DT AER AL   VYPKL+E+C ++ G +FQV+D+ WGV ++        +  MK L+ C   SAGP FV  L  KYG    P ++ A+EFE +L   +E + +  LL++W+ +D+NS+P  Y L+P +E+L +  N  + S    ++ T  W +  ++++ + + A+ K+L E+  +K+S       S  E+E +    + + P        + R I +I R+        ++D  G E     D  A + +  LR+  +P++++S+++  Y      +  +   Q E+   Y++ L   F   M + I   I +  ++   D +  EI+ H S C+   S +
Sbjct:   23 FSGNLTA-LPSHLVPAGRSVRVFISANPEDTGAERQALRENVYPKLREFCRENYGLEFQVIDLYWGVEEDEWDSPELQKTRMKLLENCLKTSAGPCFVGLLGEKYGNIRIPGEVEASEFEMILDAAIEAKLETKLLEEWYCRDENSVPAAYYLRPKSEMLRSNRNAMQPSTNAENEKT--WQEISDEIKKIFK-AAVKLLHEKGKMKHSQAKRYLFSAIEDEFDFALGK-QTPAFLKKCVCYIRKIANIERFVKIPEMGKYMDITGTEPRIIRDPEAQEKLIKLRDEFIPTIVASSNLRVYTSVTHCDMKLGYSQ-EIENHYIEGLGKQFYEDMIDIIQATIQQNFDT-ETDTLYDEILQHSSLCKTYASFY 387
The following BLAST results are available for this feature:
BLAST of TCONS_00047707 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NWD25.613e-3529.03NACHT and WD repeat domain-containing protein 2 OS... [more]
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