TCONS_00047706 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047706
Unique NameTCONS_00047706
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length474

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047706 ID=TCONS_00047706|Name=TCONS_00047706|organism=Clytia hemisphaerica|type=transcript|length=474bp
AAGAACAAACAcgaaaaggaaaaggaaaaaaaggtcgaaaacaacaaaat
aaacaacaacAGAAACAGCAgcaacaaaatcaacaaaaaagaggaaaagg
aaAAGgcaaaaaacagAAACGATTCCACGACTCTGATGAAGAAGACGAAG
AGAAAGAAGAACAACCGCAACAAGAACAAGAAAAGAAACCCATCAAGCTT
TGCCCCGATGAAGAACGAAACTCACCTATTTTCATTCATGGCAAACCTGG
CTCTGGGTTATCTTCCATAATGGCTAAAATTGCATTGACAGCAAATTATG
AATTTCCAGAACGATTATTGATCACTCGTTTTATTGGTTGCACTGAAGGA
TCTATTGATTTGTTTGAATTGATTTATTCCATCTGTTGCCAACTGAAGAG
AGCTCTCCAGATGGGTGTGGCCTCTCGACCGAAGGCTTTGCCAGAAATGA
TCGAACATTTCCACACCACCCTTG
Run BLAST on NCBI

protein sequence of TCONS_00047706-protein

>TCONS_00047706-protein ID=TCONS_00047706-protein|Name=TCONS_00047706-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
EQTRKGKGKKGRKQQNKQQQKQQQQNQQKRGKGKGKKQKRFHDSDEEDEE
KEEQPQQEQEKKPIKLCPDEERNSPIFIHGKPGSGLSSIMAKIALTANYE
FPERLLITRFIGCTEGSIDLFELIYSICCQLKRALQMGVASRPKALPEMI
EHFHTTL
Run BLAST on NCBI

transcript from alignment at scaffold_134:81986..83656-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047706 ID=TCONS_00047706|Name=TCONS_00047706|organism=Clytia hemisphaerica|type=transcript|length=1671bp|location=Sequence derived from alignment at scaffold_134:81986..83656- (Clytia hemisphaerica)
AAGAACAAACACGAAAAGGAAAAGGAAAAAAAGGTCGAAAACAACAAAAT
AAACAACAACAGAAACAGCAGCAACAAAATCAACAAAAAAGAGGAAAAGG
AAAAGGTATATCCATTTTTTCATTGGAGGCTTTTCAGGAATCTTTTCGTC
CAAATCGAACGAGCGGAATTTCATTGTAATACAAAAGGCAAAATCATAAT
GAACATTTTTTCTGCTAATACCACGCCTGTTTTCATTTTATAAAAGTTAG
GAAGGCCGCTGCTTTCTCAATAACAAAAGCTTATTTGGCAGACCCAATAG
TTTTGTAGGCCCTAATTGACACTGTAATTATCCATTTTCTATGAGTGTCA
TAAAAATCTGCTCTTCTAGACAAATTTTGCGCCCCCTTGTCTACACTAAT
GAGGCCCATCTTTTAAATTCATTTTTATGTGAAATCATTTTAGGCAAAAA
ACAGAAACGATTCCACGACTCTGATGAAGAAGACGAAGAGAAAGAAGAAC
AACCGCAACAAGAACAAGAAAAGAAACCCATCAAGCTTTGCCCCGATGAA
GAACGAAACTCACCTATTTTCATTCATGGCAAACCTGGCTCTGGGTTATC
TTCCATAATGGCTAAAATTGCATTGACAGCAAATTATGAATTTCCAGAAC
GATTATTGATCACTCGTTTTATTGGTTGCACTGAAGGATCTATTGATTTG
TTTGAATTGATTTATTCCATCTGTTGCCAACTGAAGAGAGCTCTCCAGAT
GGGTGTGGCCTCTCGACCGAAGGTAAAATATTATTCTCTCAACATGTGTG
TACGTGATCAAAAGGTTTGAAGCATATTAAAAGTGCAACAGGCGATAAAA
TTTGTTTGTAGTACACGTTTTTTTATATTCATAATATGGACCATTGCAAT
GTCTTCAATGGACCCAACAGCTGATTGGTTATAAGTGACATGATGACTGA
ATTTACGTTAATAGAGAGATATTCTACGGCTACGGTTGCGGGGCTGCCCA
TGCGGGTCGTCACCAAAGGCGATATGTCGTTGTATACTTTGCTCTGTACG
GGAAAAACACCAAAACATCGTATAAGCAAAGTCGACATAATACCGTACGT
CAAATATCGAATTTGCTTTCACCCGCCATTACTTGCCTTACTCGCCATTT
CCCTCGCCACTTTAACCGTAGTCGTAGAGAATTCCAGATACATAATCTCG
CTGATTACAACCGATTAGCTGTTGGGTCCGTTATGTAATGTCAGAAGACA
TTTGCAATGGTGCATATCATGAATAAGAAACACCTGTAAAATGAACATGA
CGCTGAAAATGGTCCGAAAAATAAGGAATTGTTAAGGAACTACACTGGCT
GAGCATAAGAAAACAAGTTAATACAAGTCACATACTTAGTAAGTCCAAAC
TTAGAAGCTCAATAAGGAATTTTAAGACTGAAATTCTCTGTAAAAATAAG
GAACTGCAGGCTCGGAGCCAAGTTAAGGTTCCTTATAAGAAAATGTGTGT
CTAAAAATGGAAAAATTGAAACTTGAAAATTTTCATTTTATTTTACGACG
TCGGTTAGTATTTCAGCTGACACCGTCACCACCACCATCATTTATGCCAT
ATTTTAACTTTGCTTTCGACCTTTTTTCCAGGCTTTGCCAGAAATGATCG
AACATTTCCACACCACCCTTG

Coding sequence (CDS) from alignment at scaffold_134:81986..83656-

>TCONS_00047706 ID=TCONS_00047706|Name=TCONS_00047706|organism=Clytia hemisphaerica|type=CDS|length=1413bp|location=Sequence derived from alignment at scaffold_134:81986..83656- (Clytia hemisphaerica)
GCTTTGCCAGAAATGATCGAACATTTCCACACCACCCTTGCAAAAAACAG
AAACGATTCCACGACTCTGATGAAGAAGACGAAGAGAAAGAAGAACAACC
GCAACAAGAACAAGAAAAGAAACCCATCAAGCTTTGCCCCGATGAAGAAC
GAAACTCACCTATTTTCATTCATGGCAAACCTGGCTCTGGGTTATCTTCC
ATAATGGCTAAAATTGCATTGACAGCAAATTATGAATTTCCAGAACGATT
ATTGATCACTCGTTTTATTGGTTGCACTGAAGGATCTATTGATTTGTTTG
AATTGATTTATTCCATCTGTTGCCAACTGAAGAGAGCTCTCCAGATGGGT
GTGGCCTCTCGACCGAAGGAACAAACACGAAAAGGAAAAGGAAAAAAAGG
TCGAAAACAACAAAATAAACAACAACAGAAACAGCAGCAACAAAATCAAC
AAAAAAGAGGAAAAGGAAAAGGCTTTGCCAGAAATGATCGAACATTTCCA
CACCACCCTTGCAAAAAACAGAAACGATTCCACGACTCTGATGAAGAAGA
CGAAGAGAAAGAAGAACAACCGCAACAAGAACAAGAAAAGAAACCCATCA
AGCTTTGCCCCGATGAAGAACGAAACTCACCTATTTTCATTCATGGCAAA
CCTGGCTCTGGGTTATCTTCCATAATGGCTAAAATTGCATTGACAGCAAA
TTATGAATTTCCAGAACGATTATTGATCACTCGTTTTATTGGTTGCACTG
AAGGATCTATTGATTTGTTTGAATTGATTTATTCCATCTGTTGCCAACTG
AAGAGAGCTCTCCAGATGGGTGTGGCCTCTCGACCGAAGGAACAAACACG
AAAAGGAAAAGGAAAAAAAGGTCGAAAACAACAAAATAAACAACAACAGA
AACAGCAGCAACAAAATCAACAAAAAAGAGGAAAAGGAAAAGGCTTTGCC
AGAAATGATCGAACATTTCCACACCACCCTTGCAAAAAACAGAAACGATT
CCACGACTCTGATGAAGAAGACGAAGAGAAAGAAGAACAACCGCAACAAG
AACAAGAAAAGAAACCCATCAAGCTTTGCCCCGATGAAGAACGAAACTCA
CCTATTTTCATTCATGGCAAACCTGGCTCTGGGTTATCTTCCATAATGGC
TAAAATTGCATTGACAGCAAATTATGAATTTCCAGAACGATTATTGATCA
CTCGTTTTATTGGTTGCACTGAAGGATCTATTGATTTGTTTGAATTGATT
TATTCCATCTGTTGCCAACTGAAGAGAGCTCTCCAGATGGGTGTGGCCTC
TCGACCGAAGGAACAAACACGAAAAGGAAAAGGAAAAAAAGGTCGAAAAC
AACAAAATAAACAACAACAGAAACAGCAGCAACAAAATCAACAAAAAAGA
GGAAAAGGAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030384XLOC_030384Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047706-proteinTCONS_00047706-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047706-exon-scaffold_134-1575043694:83552..83656TCONS_00047706-exon-scaffold_134-1575043694:83552..83656Clytia hemisphaericaexon
TCONS_00047706-exon-scaffold_134-1575043694:82885..83213TCONS_00047706-exon-scaffold_134-1575043694:82885..83213Clytia hemisphaericaexon
TCONS_00047706-exon-scaffold_134-1575043694:81986..82025TCONS_00047706-exon-scaffold_134-1575043694:81986..82025Clytia hemisphaericaexon
TCONS_00047706-exon-scaffold_134-1510915933:83552..83656TCONS_00047706-exon-scaffold_134-1510915933:83552..83656Clytia hemisphaericaexon
TCONS_00047706-exon-scaffold_134-1510915933:82885..83213TCONS_00047706-exon-scaffold_134-1510915933:82885..83213Clytia hemisphaericaexon
TCONS_00047706-exon-scaffold_134-1510915933:81986..82025TCONS_00047706-exon-scaffold_134-1510915933:81986..82025Clytia hemisphaericaexon
TCONS_00047706-exon-scaffold_134-1491911889:83552..83656TCONS_00047706-exon-scaffold_134-1491911889:83552..83656Clytia hemisphaericaexon
TCONS_00047706-exon-scaffold_134-1491911889:82885..83213TCONS_00047706-exon-scaffold_134-1491911889:82885..83213Clytia hemisphaericaexon
TCONS_00047706-exon-scaffold_134-1491911889:81986..82025TCONS_00047706-exon-scaffold_134-1491911889:81986..82025Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_134supercontigscaffold_134:81986..83656 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.2049	0.783314	1.51584	0.296602	0.541627	0.713335	1.37697	2.25593	2.0307	1.11793	2.03455	3.03151	6.76691	4.71582	3.04082	2.93694	2.31154	1.75119	10.6737	16.3815	1.68273	2.27293	0.460507	1.67467	5.60583	9.87785	0.550721	2.15506	1.18876	0.756971
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047706 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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