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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047703 ID=TCONS_00047703|Name=TCONS_00047703|organism=Clytia hemisphaerica|type=transcript|length=1745bp
TCGAAGACCAAGTTATGTTTCATTCATCAGACAAATATATCTCAAGACAT
ATTACACCTGGATTAAATGATAAAGTTGTTTGGATTAAGCAGACAAATGA
ATTTGCGATTACAGATGAacgaaataatttgaaaatcttcagtttggAGA
CAGgTAACCAAGTTGAACTTATAGAAACAAAGATGCGCGATGATTGTCAA
CGAATCTTGGGAAATCAAGATGGTAGCATCATCGTGATGTTCTTTTCGGA
TGAAGATCAAGAAAAAGTTTCTGCGCATGTGTACAACATGACCACGAGGT
CAAAAGTTGGAGAAATTGAGAGAGGAGTTGGTTTCAGCAGTGATTTCAAG
CTGGCAGCTCTCTCCGAGAATGGACAACAATTGTTTATTCCAAATAAGgA
GAAGAACAGCATTTTGATTTTCGATGTTTCCAATGGCTCCTTACTCAACA
CCCGGCCGCCCTTTGGTAATTTTAACAGCAGCAAAACCCTACCGCCCTTT
GGAAAAACCCTCCCTCCCATTGGCGGTTACAATCCAAAGACAGATACTAC
TATTACAAAGAAAGTGCTTCAGACGCCCGCGACCGCTCGAAAAGAAGCTT
ATTTACCACCCGTCTTAGTTGCTGGCGTAACAACCATTTCCAAAGGAGTT
GAATACCATTTTTTGAGATGTTACGAAGACCAAACCTGGCAACCTTTAGT
CGAAGTGCGACTTCCTAGCGCCGTTGTTGAGGTCCACTTTTCTGCGTCGC
AAGATGAGAAAGATGGCGTTTACCTTTTGGTGGAAACTGAGGAGTCATTa
cttttgtttgatttctcGGCTGTGGTCAGTCACAAGACGATTCAGTATGT
AGCCAACTTATGTCTTGGTGACAGCAAAGGATGTTATCAATTCTGCAAGA
GACGAATCATCGCTGCAAGTGTACCCAAGACTGAAAGATTAGTCTTCTTT
CAGTTATGCAATGATGAGATGGTATCTCCTGAACAGAAACACGTCAAACC
TGTCAAATTATAAAGATTACCTTAAAAGAGAACTAATTCTAGCGGGatct
aattttcgcggtcgaaaataaaaacaaaaatcacattttcaccGTTTACC
CTGTCTTGgacacatttctttcatttcccttgagatttttcaataatttt
ttgaaaaatggtcaaatttgtAATTCGTGGATTctaattttcgcagtttt
tccgaaaattagttcccttaaggtacaatGGTGAATTCATTGATTTTGGA
TTAGTAACTTTATAGTTACCTCTCTCTAATCCGATGTTCAAGGAACTAAA
ACTTTTCTTCGAagtaaaaataaagaatttgcTCATTTATTGGATCAGAG
ATTATTAATTGATTTTGGATATGATCATTAAATGGCAGCATCTCTGACGA
TACCGAGAGCTGAAATTCTTACTTATGGTACGTACGCAAATCAAAATACA
TTTACATAAACGCCAAGAATTCTACGGAGCATTTAAAAGAatgaaatttc
atttaaaagaatgaaatttcttttgaatcttTAAGCGGCACACCACTGGA
ACCTAACGTAATAagactttcattgaaaaaaaggtTACTCTTAATCTTGG
ATATCCATATGTGGTGGCAGTTTATGTGGTGCTAAAACCACCAACTTTTA
TATAATGTAAATAATTATGTGTAAAAAGCAAAATTATTATGAAAGAATTT
TCATAAGTTACAGTATTAAACCATCCTCCATATATGAGATTGAGG Run BLAST on NCBI protein sequence of TCONS_00047703-protein >TCONS_00047703-protein ID=TCONS_00047703-protein|Name=TCONS_00047703-protein|organism=Clytia hemisphaerica|type=polypeptide|length=336bp
EDQVMFHSSDKYISRHITPGLNDKVVWIKQTNEFAITDERNNLKIFSLET
GNQVELIETKMRDDCQRILGNQDGSIIVMFFSDEDQEKVSAHVYNMTTRS
KVGEIERGVGFSSDFKLAALSENGQQLFIPNKEKNSILIFDVSNGSLLNT
RPPFGNFNSSKTLPPFGKTLPPIGGYNPKTDTTITKKVLQTPATARKEAY
LPPVLVAGVTTISKGVEYHFLRCYEDQTWQPLVEVRLPSAVVEVHFSASQ
DEKDGVYLLVETEESLLLFDFSAVVSHKTIQYVANLCLGDSKGCYQFCKR
RIIAASVPKTERLVFFQLCNDEMVSPEQKHVKPVKL Run BLAST on NCBI transcript from alignment at scaffold_134:73634..76395- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047703 ID=TCONS_00047703|Name=TCONS_00047703|organism=Clytia hemisphaerica|type=transcript|length=2762bp|location=Sequence derived from alignment at scaffold_134:73634..76395- (Clytia hemisphaerica)
TCGAAGACCAAGTTATGTTTCATTCATCAGACAAATATATCTCAAGACAT
ATTACACCTGGATTAAATGATAAAGTTGTTTGGATTAAGCAGACAAATGA
ATTTGCGATTACAGATGAACGAAATAATTTGAAAATCTTCAGTTTGGAGA
CAGGTTAGTGGCTTTTTGTTTATCTCCTAAAAATTAAACTTAAAGGGTCT
TGAAAGTACCCGAGTCAGAATCACTTAAAGTCAGCTGGGTGTGTATTTAT
AAATACAAAGGCAGTTGAAATCAATTATGGAATGTTATTTGTATCCGACA
CTCAAAACTGTACCCAAGCTAAATGTATCAGAATAACAAGGGCTGCCAGA
TGTGAATAGTTGAATGAATGGAATAAGGAATCAATAGGCTATTTCAAAGT
CGCAAAGTGTAATGGGTAATCAGGACCATTGCGCGCACGCTAATAACGAC
TTACTATTGGTCTAATGTTTTGAAAAAGTTTGAATATTTTTGTATCTCGC
CAACGAGAAACTGTTAATCAGTCCTGATTATCCATGACCCATTTCGACTG
TGAAATGGCCTATGCTTATGAAATGTACACAAAATTAAAGTCGAGAAAAT
TAAAAATTCTTTAAAAACACGACGTTTGACGTTGACGTTTTGGTCAAAAA
CCAGTTTTTGAAACAAAATATTTTTTTAATTTCCAGGTAACCAAGTTGAA
CTTATAGAAACAAAGATGCGCGATGATTGTCAACGAATCTTGGGAAATCA
AGATGGTAGCATCATCGTGATGTTCTTTTCGGATGAAGATCAAGAAAAAG
TTTCTGCGCATGTGTACAACATGACCACGAGGTCAAAAGTTGGAGAAATT
GAGAGAGGAGTTGGTTTCAGCAGTGATTTCAAGCTGGCAGCTCTCTCCGA
GAATGGACAACAATTGTTTATTCCAAATAAGGTATGAATGCATCTCCTTC
ACATAGTCCCTTGAACCTTTAGTAGGATTGCGAAGCTTAAAGTTTTCTTA
ATCTGTTGAAAGTTGACATTTAAACTGTGAATGTAAAATTCAGATAGTTT
GAGATATTTTGCTTGTAGATTTCTTCAATGGTCATGAGTAAAAAATTAAC
TCTGTTTGAACGTTGAGAAATTCAAGATACAAGTGTTTGAATATTTTACT
AAGAAAATGGTAGAACTTTAAACTGTGTAAGAACCAAATTTTCAGAACAT
TGGATGTTTTGCTCAAAAGATTTCATTCCATTTGATTAGCCATTTAAAAA
GAATCTCAAAATTAACACCTGTCAAAAGGAATAATTTTACATTCGCAACG
CACTGTATCCTTTTAAACCATATCTGGTTTCATGAATTCTTCGTATTTGT
CGTTTGGGCATTTCTATTTCCACCATAACTTCGTCCCATCTCATCAGCAA
CTTTTCACTTTTTAGGAGAAGAACAGCATTTTGATTTTCGATGTTTCCAA
TGGCTCCTTACTCAACACCCGGCCGCCCTTTGGTAATTTTAACAGCAGCA
AAACCCTACCGCCCTTTGGAAAAACCCTCCCTCCCATTGGCGGTTACAAT
CCAAAGACAGATACTACTATTACAAAGAAAGTGCTTCAGACGCCCGCGAC
CGCTCGAAAAGAAGCTTATTTACCACCCGTCTTAGTTGCTGGCGTAACAA
CCATTTCCAAAGGAGTTGAATACCATTTTTTGAGATGTTACGAAGACCAA
ACCTGGCAACCTTTAGTCGAAGTGCGACTTCCTAGCGCCGTTGTTGAGGT
CCACTTTTCTGCGTCGCAAGATGAGAAAGATGGCGTTTACCTTTTGGTGG
AAACTGAGGAGTCATTACTTTTGTTTGATTTCTCGGCTGTGGTCAGTCAC
AAGACGATTCAGTATGTAGCCAACTTATGTCTTGGTGACAGCAAAGGATG
TTATCAATTCTGCAAGAGACGAATCATCGCTGCAAGTGTACCCAAGACTG
AAAGATTAGTCTTCTTTCAGTTATGCAATGATGAGATGGTATCTCCTGAA
CAGAAACACGTCAAACCTGTCAAATTATAAAGATTACCTTAAAAGAGAAC
TAATTCTAGCGGGATCTAATTTTCGCGGTCGAAAATAAAAACAAAAATCA
CATTTTCACCGTTTACCCTGTCTTGGACACATTTCTTTCATTTCCCTTGA
GATTTTTCAATAATTTTTTGAAAAATGGTCAAATTTGTAATTCGTGGATT
CTAATTTTCGCAGTTTTTCCGAAAATTAGTTCCCTTAAGGTACAATGGTG
AATTCATTGATTTTGGATTAGTAACTTTATAGTTACCTCTCTCTAATCCG
ATGTTCAAGGAACTAAAACTTTTCTTCGAAGTAAAAATAAAGAATTTGCT
CATTTATTGGATCAGAGATTATTAATTGATTTTGGATATGATCATTAAAT
GGCAGCATCTCTGACGATACCGAGAGCTGAAATTCTTACTTATGGTACGT
ACGCAAATCAAAATACATTTACATAAACGCCAAGAATTCTACGGAGCATT
TAAAAGAATGAAATTTCATTTAAAAGAATGAAATTTCTTTTGAATCTTTA
AGCGGCACACCACTGGAACCTAACGTAATAAGACTTTCATTGAAAAAAAG
GTTACTCTTAATCTTGGATATCCATATGTGGTGGCAGTTTATGTGGTGCT
AAAACCACCAACTTTTATATAATGTAAATAATTATGTGTAAAAAGCAAAA
TTATTATGAAAGAATTTTCATAAGTTACAGTATTAAACCATCCTCCATAT
ATGAGATTGAGG Coding sequence (CDS) from alignment at scaffold_134:73634..76395- >TCONS_00047703 ID=TCONS_00047703|Name=TCONS_00047703|organism=Clytia hemisphaerica|type=CDS|length=3033bp|location=Sequence derived from alignment at scaffold_134:73634..76395- (Clytia hemisphaerica)
GAGAAGAACAGCATTTTGATTTTCGATGTTTCCAATGGCTCCTTACTCAA
CACCCGGCCGCCCTTTGGTAATTTTAACAGCAGCAAAACCCTACCGCCCT
TTGGAAAAACCCTCCCTCCCATTGGCGGTTACAATCCAAAGACAGATACT
ACTATTACAAAGAAAGTGCTTCAGACGCCCGCGACCGCTCGAAAAGAAGC
TTATTTACCACCCGTCTTAGTTGCTGGCGTAACAACCATTTCCAAAGGAG
TTGAATACCATTTTTTGAGATGTTACGAAGACCAAACCTGGCAACCTTTA
GTCGAAGTGCGACTTCCTAGCGCCGTTGTTGAGGTCCACTTTTCTGCGTC
GCAAGATGAGAAAGATGGCGTTTACCTTTTGGTGGAAACTGAGGAGTCAT
TACTTTTGTTTGATTTCTCGGCTGTGGTCAGTCACAAGACGATTCAGTAT
GTAGCCAACTTATGTCTTGGTGACAGCAAAGGATGTTATCAATTCTGCAA
GAGACGAATCATCGCTGCAAGTGTACCCAAGACTGAAAGATTAGTCTTCT
TTCAGTTATGCAATGATGAGATGGTATCTCCTGAACAGAAACACGTCAAA
CCTGTCAAATTATAAGTAACCAAGTTGAACTTATAGAAACAAAGATGCGC
GATGATTGTCAACGAATCTTGGGAAATCAAGATGGTAGCATCATCGTGAT
GTTCTTTTCGGATGAAGATCAAGAAAAAGTTTCTGCGCATGTGTACAACA
TGACCACGAGGTCAAAAGTTGGAGAAATTGAGAGAGGAGTTGGTTTCAGC
AGTGATTTCAAGCTGGCAGCTCTCTCCGAGAATGGACAACAATTGTTTAT
TCCAAATAAGGAAGACCAAGTTATGTTTCATTCATCAGACAAATATATCT
CAAGACATATTACACCTGGATTAAATGATAAAGTTGTTTGGATTAAGCAG
ACAAATGAATTTGCGATTACAGATGAACGAAATAATTTGAAAATCTTCAG
TTTGGAGACAGGAGAAGAACAGCATTTTGATTTTCGATGTTTCCAATGGC
TCCTTACTCAACACCCGGCCGCCCTTTGGTAATTTTAACAGCAGCAAAAC
CCTACCGCCCTTTGGAAAAACCCTCCCTCCCATTGGCGGTTACAATCCAA
AGACAGATACTACTATTACAAAGAAAGTGCTTCAGACGCCCGCGACCGCT
CGAAAAGAAGCTTATTTACCACCCGTCTTAGTTGCTGGCGTAACAACCAT
TTCCAAAGGAGTTGAATACCATTTTTTGAGATGTTACGAAGACCAAACCT
GGCAACCTTTAGTCGAAGTGCGACTTCCTAGCGCCGTTGTTGAGGTCCAC
TTTTCTGCGTCGCAAGATGAGAAAGATGGCGTTTACCTTTTGGTGGAAAC
TGAGGAGTCATTACTTTTGTTTGATTTCTCGGCTGTGGTCAGTCACAAGA
CGATTCAGTATGTAGCCAACTTATGTCTTGGTGACAGCAAAGGATGTTAT
CAATTCTGCAAGAGACGAATCATCGCTGCAAGTGTACCCAAGACTGAAAG
ATTAGTCTTCTTTCAGTTATGCAATGATGAGATGGTATCTCCTGAACAGA
AACACGTCAAACCTGTCAAATTATAAGTAACCAAGTTGAACTTATAGAAA
CAAAGATGCGCGATGATTGTCAACGAATCTTGGGAAATCAAGATGGTAGC
ATCATCGTGATGTTCTTTTCGGATGAAGATCAAGAAAAAGTTTCTGCGCA
TGTGTACAACATGACCACGAGGTCAAAAGTTGGAGAAATTGAGAGAGGAG
TTGGTTTCAGCAGTGATTTCAAGCTGGCAGCTCTCTCCGAGAATGGACAA
CAATTGTTTATTCCAAATAAGGAAGACCAAGTTATGTTTCATTCATCAGA
CAAATATATCTCAAGACATATTACACCTGGATTAAATGATAAAGTTGTTT
GGATTAAGCAGACAAATGAATTTGCGATTACAGATGAACGAAATAATTTG
AAAATCTTCAGTTTGGAGACAGGAGAAGAACAGCATTTTGATTTTCGATG
TTTCCAATGGCTCCTTACTCAACACCCGGCCGCCCTTTGGTAATTTTAAC
AGCAGCAAAACCCTACCGCCCTTTGGAAAAACCCTCCCTCCCATTGGCGG
TTACAATCCAAAGACAGATACTACTATTACAAAGAAAGTGCTTCAGACGC
CCGCGACCGCTCGAAAAGAAGCTTATTTACCACCCGTCTTAGTTGCTGGC
GTAACAACCATTTCCAAAGGAGTTGAATACCATTTTTTGAGATGTTACGA
AGACCAAACCTGGCAACCTTTAGTCGAAGTGCGACTTCCTAGCGCCGTTG
TTGAGGTCCACTTTTCTGCGTCGCAAGATGAGAAAGATGGCGTTTACCTT
TTGGTGGAAACTGAGGAGTCATTACTTTTGTTTGATTTCTCGGCTGTGGT
CAGTCACAAGACGATTCAGTATGTAGCCAACTTATGTCTTGGTGACAGCA
AAGGATGTTATCAATTCTGCAAGAGACGAATCATCGCTGCAAGTGTACCC
AAGACTGAAAGATTAGTCTTCTTTCAGTTATGCAATGATGAGATGGTATC
TCCTGAACAGAAACACGTCAAACCTGTCAAATTATAAGTAACCAAGTTGA
ACTTATAGAAACAAAGATGCGCGATGATTGTCAACGAATCTTGGGAAATC
AAGATGGTAGCATCATCGTGATGTTCTTTTCGGATGAAGATCAAGAAAAA
GTTTCTGCGCATGTGTACAACATGACCACGAGGTCAAAAGTTGGAGAAAT
TGAGAGAGGAGTTGGTTTCAGCAGTGATTTCAAGCTGGCAGCTCTCTCCG
AGAATGGACAACAATTGTTTATTCCAAATAAGGAAGACCAAGTTATGTTT
CATTCATCAGACAAATATATCTCAAGACATATTACACCTGGATTAAATGA
TAAAGTTGTTTGGATTAAGCAGACAAATGAATTTGCGATTACAGATGAAC
GAAATAATTTGAAAATCTTCAGTTTGGAGACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047703-exon-scaffold_134-1575043694:76243..76395 | TCONS_00047703-exon-scaffold_134-1575043694:76243..76395 | Clytia hemisphaerica | exon |
| TCONS_00047703-exon-scaffold_134-1575043694:75465..75709 | TCONS_00047703-exon-scaffold_134-1575043694:75465..75709 | Clytia hemisphaerica | exon |
| TCONS_00047703-exon-scaffold_134-1575043694:73634..74980 | TCONS_00047703-exon-scaffold_134-1575043694:73634..74980 | Clytia hemisphaerica | exon |
| TCONS_00047703-exon-scaffold_134-1510915933:76243..76395 | TCONS_00047703-exon-scaffold_134-1510915933:76243..76395 | Clytia hemisphaerica | exon |
| TCONS_00047703-exon-scaffold_134-1510915933:75465..75709 | TCONS_00047703-exon-scaffold_134-1510915933:75465..75709 | Clytia hemisphaerica | exon |
| TCONS_00047703-exon-scaffold_134-1510915933:73634..74980 | TCONS_00047703-exon-scaffold_134-1510915933:73634..74980 | Clytia hemisphaerica | exon |
| TCONS_00047703-exon-scaffold_134-1491911889:76243..76395 | TCONS_00047703-exon-scaffold_134-1491911889:76243..76395 | Clytia hemisphaerica | exon |
| TCONS_00047703-exon-scaffold_134-1491911889:75465..75709 | TCONS_00047703-exon-scaffold_134-1491911889:75465..75709 | Clytia hemisphaerica | exon |
| TCONS_00047703-exon-scaffold_134-1491911889:73634..74980 | TCONS_00047703-exon-scaffold_134-1491911889:73634..74980 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_134 | supercontig | scaffold_134:73634..76395 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR015943 | WD40/YVTN_repeat-like_dom |
| IPR011044 | Quino_amine_DH_bsu |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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