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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047702 ID=TCONS_00047702|Name=TCONS_00047702|organism=Clytia hemisphaerica|type=transcript|length=1332bp TCGGCAGCTGCAATATTGAATTGAAGCAAAAGATTAGGTACCAATCTCCT ACTAAATGACCGCGCGACCTCCTTGGAGTTAGCGCGCGAAAATACCTGAA AGAAGTCAATGCTCTGCAACTTTTGATTTGTCGATGAGAATGAgaacact gcaatgtcttcaaattatcaaaaaaacaaaacaaaaaattgaacagaCAG AACTTCCTGATGtggcaaaaaatataaaaatatattggCAACTTTGATTG AACCTCATCACCATGAACGGTCAAGGACCATCAGGATATGGAGTTTCCAA CAGAAACCAAACCTCTAATCCCAGAACTTTAGAATCGAACAAAAACGTAA TAAATCAGGAAAGACTCGATCGAAAACGGCATCTTAAATCATACACCACC GTATTTACAGTTCACGGGTTATCAAGAGTATTTCATGGTCAATTATGGGA ACGTGTCGCATGGGCTTCAGTATTCCTTCTCTTTGCTATCTTTATATTAA TCATTGTTGTATCCAGAATCCNTGGGCTTCAGTATTCCTTCTCTTTGCTA TCTTTATATTGATCATTGTTGTATCCAGAATCCAGGACTATACGAGCTAT GACATTTACACGGATATGGAAATAAAGTTTGAAGAGAATATAAAATTCCC AAGTATAACTATTTGTCCCAGTATAATCATCGACCGTCTACAATCATGGT GCGGTGTTCATGTTATGGACCCTCAGGTACGGCCCCAACTCTTTCATTTG AATATGAGTGACTATTGCAGCAAAGAGAAACGTAAGCAGATAATGGGAAC AGACACCAGTTATTATTCCAATGACTATTACAACCACAATTGGTACGAAA TCAAAGTCACCACGTTAGACTCAGTGATGAATCCAGTATATAAGAATTAT TTCAGATCCTTGCCAGAATATAACCATGCATGTGTCACATGGAACCCACG TGGAAATCTCACCAAAGGTAAATATGGATTTGCTTCGATTCATATTCAAC TGAAGCAATCTTCACCAAGTTATTACATTTTACCTCATGGTCCAGATGAG TATATCGACATTGGACAATTCATGTCAGCTAGTCCTTCCACTCCGGGGGC GATGTACCAAGTTAACGTAGAGGGTACTACTCTGCAACGCTTACCGGATC CTTACCCATCCAAATGCAGAACAAAAGCTATGTCTGAGACATCATCCCTA GTCAATAAATATTCTCGTCAACTTTGTAATGACTTAAGTAAACCAATCAG TAAATTACAACGTTGTGGAATTGTGGATGATTTCTCTTATCCATTCCTTG ATCAAGATTACATATCGAAAAGTGAGAACNGT Run BLAST on NCBI protein sequence of TCONS_00047702-protein >TCONS_00047702-protein ID=TCONS_00047702-protein|Name=TCONS_00047702-protein|organism=Clytia hemisphaerica|type=polypeptide|length=296bp
MGTCRMGFSIPSLCYLYINHCCIQNXWASVFLLFAIFILIIVVSRIQDYT SYDIYTDMEIKFEENIKFPSITICPSIIIDRLQSWCGVHVMDPQVRPQLF HLNMSDYCSKEKRKQIMGTDTSYYSNDYYNHNWYEIKVTTLDSVMNPVYK NYFRSLPEYNHACVTWNPRGNLTKGKYGFASIHIQLKQSSPSYYILPHGP DEYIDIGQFMSASPSTPGAMYQVNVEGTTLQRLPDPYPSKCRTKAMSETS SLVNKYSRQLCNDLSKPISKLQRCGIVDDFSYPFLDQDYISKSENX Run BLAST on NCBI transcript from alignment at scaffold_134:44465..58594+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047702 ID=TCONS_00047702|Name=TCONS_00047702|organism=Clytia hemisphaerica|type=transcript|length=14130bp|location=Sequence derived from alignment at scaffold_134:44465..58594+ (Clytia hemisphaerica) TCGGCAGCTGCAATATTGAATTGAAGCAAAAGATTAGGTACCAATCTCCT
ACTAAATGACCGCGCGACCTCCTTGGAGTTAGCGCGCGAAAATACCTGAA
AGAAGTCAATGCTCTGCAACTTTTGATTTGTCGATGAGAATGAgaacact
gcaatgtcttcaaattatcaaaaaaacaaaacaaaaaattgaacagaCAG
AACTTCCTGATGtggcaaaaaatataaaaatatattggCAACTTTGATTG
AACCTCATCACCATGAACGGTCAAGgtataatttgattttagtcgaattt
tattttcttgCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgaaattattttt
ctgaatttgtaagaaacattattattttaatgtcaaGTTGTCATAAATAC
ATACAAGAATGAGAAAAATTAACTTTGAAAGTTAAAACATACACTAAATC
CTAAAAAACGGccgggtttttccaaaaatagcctatgaaacattttgatc
aaaaatgagaaaatccaccTTGCAGGACCTCTAGTTCATTGTAATTCTGG
ATTTTTGACTCAATTTTTGTATATTCTGATGAACTCTacctatttgaaga
attttccagCAAAGAAATCTCAATATTCAAAtacaattgacgaaaagata
agggaattttgacataggcccaaattttccgtcacggcgtgacaaaaact
aaaaagggctacagaaaatcttgtgggttaatttttgtatttctttttta
ggTTTCTGATTAACACTAATATGTTGATGtttcatggaaaaaatgaagac
cTGATTCCACTCTCTTAGATTTTTACaggctattgaaaattttccgtcac
ggcgtgacaaaaactctGACCTACTACTAGTcagtgaaaaaatggatttg
aaagCCTCAAATCATAGATTTAACCAGTCCAAGTCCTATACAAAGTTGAT
TCAGCTTACAAAAGAGACCTTTTGATTAGTTTTTTGAATCCATAACTGAA
AAAACCCTCTAATAAGGACATATGATTCCGAAGCAGTTTTTTCAGTACTG
TAGCAGCAGGTTCAGATTTAGCCTATGTTGATTTCTTGGGAACATAGGCA
TGTTACATATCAAATTgtcagaaattttatgtagatttcaaaaatggtta
gaAGTTGGGGTTGAAAATGAAGTCAATGAGAAGGAAATGCAAAACTTCAT
GATTTTTTCTCCTACTTTGGCCTacaattttacaaaaacctgaaaaatgc
aATAACAATTTTTTAGAGCGATGTTAAgctctaattttttttgctttttg
ttaCAAAATACCATAGGTTCCtataaaaataggttttatagagatttgaa
gaccttcattttttgacatttctaaaaattttgggtacgagctttttgct
tatagctatAACAAAGcgaattttcagaaaatgagctggAATTCTAAGCA
ACTCCAGCCCCCTGCGACCCAAAATCTCGGAgggggggatacttaggcaa
atggaggccAGGGCAGATTGCTTAGGCAGATGCCGCCCgtaaagggtacc
ttttttggtcCCACTActtttgattaagaaaagttgagactttgatataa
tacatttttttgctcagtttgaagagctctatcacgtggtataggtcttt
tttgattttgaagaccccccgaAAATCatttcagggcttacaattttgcc
taaaaacgcaaaaaatcgcaaattacgtaaaaactgcgggttttcaagct
tggtaacattcaaattccgaatcagcaccctcaaattgaccaagaaagat
attaaaagtttattcaccgacattttgaaaaaaagtgaaacgttttgagG
TACCTGGCCATGGTCTACGTGTATATATCATTGGAAGATTCGTTGTTTTT
ATTTCGAAATACTGCAGAATACtcactttcgcgaggtcgaaaaattgaca
tttttactttcgcgattttgacgaaNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNttttttttttttttctactttagtatgtttcat
ttttcatcttagTTATATACTTTTTGTGGTCACTTTAGCTTTAGGAGGTG
CTGTGATCCTCACCGAGGCCTATCCCCTTGCATGGGAAGgcatctgtctg
tctgtctgtctgattttgacgaaaaaatccttttttgcaAGCATCAACTT
TCGCGAATTATAACATAAAAATAACAAGACGAcctaaagtcgaaaatttc
gcctaggatttgaactgcatgggaaaaataAGAAGTTGacatctacttta
catcgagccttgatgaaacaatttcacAAGAACAACGGGgcttaaaatca
ctaaaaaataagaccaatttaagaacaattgttgtttaatttttaagaac
tcttataaagtatatgcttgtcataagtaaatatgctcatattgcacgcc
atcccttgtttactttgtaagaattaattactgaaaggtatatcaccgtc
tatgatttgattctcataaagtaaatgcttataagaaaaatgaatatgct
catattgtgctccgtcccttgtttactttgtaagaactaattaacgaaag
gtatgtcaccgtctatcgagagttattgatttgattcttataaagtatgt
gcttataagaaaaataaatatgttcatattatgcgtcatcccttgtttac
tttgtaagaactaattaccgaaaggtatatcaccgtctatcaacagttat
tgatttgattcttataaagtatgtgcttataagaaaaataaatatgttca
tattatgcgtcatcccttgtttactttgtaagaactaattaccgaaaggt
atatcaccgtctatcaacagttattgatttgattcttataaagtatgtgc
ttataagaaaaataaatatgttcatattatgcgtcatcccttgtttactt
tgtaagaactaattaccgaaaggtatatcaccgtctatcgagagtttttg
atttgattcttataaagtatatgcttataagaaaaataaatatgctcata
atgtGTACCgtcctttgtttattttgtaagaactaattaccgaaaggtat
atcaccgtctatcaagagttattgatttgattcttataaagtaaatgctt
ataagaaaaatgaatatgctcatattgagcgccgtaccttgtttactttg
taaaaactaattaacgaaaggtatgtcaccgtctatcaagagctattgat
ttgattcttataaagtaaatgcttgtaagaaaaataaatatgctcatatt
gagcgccgtcccttgtttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNtgctcatattgtgcaccgtcctttg
tttactttgtaagaactaattaccgaaaggtataccaccgtctatcgaga
gttattgatttgattcttatagagtaaatgcttataagaaaaatgaatat
gctcatattgagcgccgtcccttgtttactttgtaagaactaattaccga
aaggtatgtcaccttctatcaagagctattgatttgattcttataaagta
tatgcttataagaaaataaagaaaaaacaaaaactgtgaagctaaagaca
caaagatatatgacNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Ncgaaaatcgtccgtggttatacgagcgtgtaatttgtaaattaatttta
gtgagttcgtccaccgtatcaagtactttcgttttctcaaaaaaaatcca
CCAACAAACCACGATCCACCACAGAAGctgatcgtaatactttcgctagg
cgaaattaaaaatttatacgctatttctatttctatccatttatttgcat
aagcctAAAAAAACTAACAtcgcaaatatttaacaaaaacttgtttataa
aaataaaaaagtataaaaaggaagaagaaTATTATACAATAATAAATAGT
TATACAATAATGAATAGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNGTCCGATTGAAGATGGCCGTTCTCGTCGACTAATGGTGCGACTCC
GACAATGTCTCTACGCTttgattttatatatttaaaaagctttttcttgT
CTCCACCAACAGAATTCTTGATAAAGATACTTTTTGCTTTGTTGTATAGT
TTACTTGCCATACGTGAACATTCTTGAAACCTCTTCCAATCTTTTGGGTC
TTTAGTAGATTTATAACGTCTGTACCTACGTTTTTTCATTCTAGCTGCTC
TTTTACATTCGTGGGTGAACCAAGGTTGAGAAAAGCGTTGCGAGGTTATT
TTGGTTGGTACATGTTCTTTTTGAGTGTTCAACATTACTGTCTTAATATC
ATTCCAGAGGTCGTTGATTGGCGTGTCAATTGTGTGGTTTTGGCAGGCAG
TAGTCAAGTTCTTTTTCATGTCTGATTTCAAGGCTTCAATATCTGCTCTG
TTCCAACAATTGATAATTCGTTTCACTGGTTTATGACGTTTAGGGCAGCA
GAATGTGTCAGCAAGGATTCCAGTGTCGTGGTCTCCAAAACCCATAGTAG
GTGTACATGTGTTGAGAAGACCATGTCGATTTGTTAGTAGTAGGTCAAGT
GTGTTTTCTAAGCGTGTAGGAAAATCTACCAGCTGCTTCAATGCACATGT
CTCAAAAGTTTCTAGAAAGTTTTCGTTCAGTGCTTTTGGATATTGATGGC
TTGTGATGCTGCTATTCAACCAATCAATATCTGGAAGGTTAAAGTCTCCT
CCTATCCATATGGGATTGTTCTTGTATTTTTTACATATTTGCTCGATTTC
TGATATTAATTGATTATTTTGGATGTCTGTGTTGTACATTGAGCGGTAAC
ATGCACAAATTATCATAGGTTTATCAAGAGTTTGTACTTTCAAGGAAACA
ATTTCTGCGGTTTCGTGTTTTATTTCATCAATAATTAGTTCCTCTTTATA
AATTATGATCACACCACCTTTGCTGTCAGGTCGGTCTTTGCGGTCCTTGC
GTCTTTGCTAAATAACGGCTTACTGTAGAAGaacaaatatttcttgaatc
gGATTGAAATGGAATTGGAACTTTTGCTTTTTTTACTTATACGAGGCATT
AAATGTGATAAAATGTGCCATTATACCCGGGGATTAATGCACATactgta
tttttataagcaatccCAATTTTTGGCTCAGGTCTGGAGTTGCTAAGGAT
TTTCCGGATTTTAGCCAAAAAGTTGCATATggattttgagccaaaaatgc
cAAGCAACTTCAAAAATTCTggctttttatttctttcccTGTTCAAAATA
CCTTAAATTTGGTATTCAAGAACTATCGGTACACATTTTAATGCCAATTT
ATGCCAAAAATCCCTCTTTTTAAAGGAATTTTTGGTTATTTCCCTGTTTA
TGCTCAGTTTCAGGGCTAGGTTGCTAAGaccaatgggcttttccagaaaa
aaaccgtacaccccctgttgaggagctccaaccttttgtgaattATCCCC
TTgaaattccaggcaattttaggatcatacccctctggaattccgaattt
ttacagattttcattcattacccccatggaattccacttatttttgacgg
ttttttgtctactgctatggaattccactgcatttcaaaccataccccct
tggaatggaaaaagactcctcaacagggggtgcacggtttttttctggaa
aagcccaatagccagatttaattttttggccattctcAGGATTATACCCT
CAGCAATTACTTGGCTgctttaaataaaaaatgtgtaatctTACATTTTA
TTCTATGTTTTacggattttttattttgtcaagaatgtttcatgagcata
aactttcgcgactGGCCCATCCTAGCAAGAAGAATCTTCAAATACAATTT
CTTTCTCGAAAAGGGCTAAAACTCGCGAAAATCGAGAAAGTTTCTACTAT
TACTAAGTTAAAAGTTATTACGTGCCTAAAGTAATCAAATTTCAAGCTAA
AGACCCGAAGGAGTTGATGATGTAATATTTTGCGTTGGAAATGCAACGAG
GCCTGACAATTTCAGAGTTGCTTTTTACGAGTTATTTTTCTCCGAGTTAT
TTATTCTGAATTGTAGGAACTCCGTCTTTTGAATAAAGTCTTTTAGCCTG
TTAAAGCCTAATAGGTCAAAAGACAAAAGTTTCAAGAcaattcaagaagt
atttgtccctctactGTAAAGGcatttttcatgtgaaaattctcattttt
acatctcgattcgcgaaagtttatgctcgcgtaagtaaaatattgtaaat
ttcGCAATTCGTTTCGacctcgcaaaagtttctgctcagCCTCAGGATTT
CAGGATTTCGAACTTTAAATTGTCATATCTTTTTGTGTGTTGGAGTATGA
GTCTTGTTGTACTTTTTGTACAATTGAACAATCATCTTTTTTTAgttcga
tttaaaaaaatcgccaattttttactcattttaggGGTTATAAGTTTTAA
CTACAACATCAGTTTTTTGGCCTGAAAAACTTTTGCCAGGCCTAATTCGC
GGGCCCCctctcaaaaaaactttaaaatcctATCTACTTTCGAACCAATT
GCATGCCTAGTTGACCCCTTACTATTAGAAATGGTATAAAAATCCAACTC
TCAGACCCGGAGAGAGGGcattctattttgaaaaaagtttcaaaacagtA
ACTAGTATTTTCCAATTCTGATAAAACCTGGCACAAATTCATATTTACAG
TAGTAGTGCACACTTTTAAATCAATTGGATAAGGAGTTAcgttttttttg
gtaaaaaacaTCAACAGTGCTATACAAGACGAAATTCTATCGTTATGACt
ttcttttaactttttctttacAGGACCATCAGGATATGGAGTTTCCAACA
GAAACCAAACCTCTAATCCCAGAACTTTAGAATCGAACAAAAACGTAATA
AATCAGGAAAGACTCGATCGAAAACGGCATCTTAAATCATACACCACCGT
ATTTACAGTTCACGGGTTATCAAGAGTATTTCATGGTCAATTATGGGAAC
GTGTCGCATGGGCTTCAGTATTCCTTCTCTTTGCTATCTTTATATTAATC
ATTGTTGTATCCAGAATCCNTGGGCTTCAGTATTCCTTCTCTTTGCTATC
TTTATATTGATCATTGTTGTATCCAGAATCCAGGACTATACGAGCTATGA
CATTTACACGGATATGGAAATAAAGTTTGAAGAGAATATAAAATTCCCAA
GTATAACTATTTGTCCCAGTATAATCATCGACCGTCTACAATCATGGTGC
GGTGTTCATGTTATGGACCCTCAGGTACGGCCCCAACTCTTTCATTTGAA
TATGAGTGACTATTGCAGCAAAGAGAAACGTAAGCAGATAATGGGAACAG
ACACCAGTTATTATTCCAATGACTATTACAACCACAATTGGTACGAAATC
AAAGTCACCACGTTAGACTCAGTGATGAATCCAGTATATAAGAATTATTT
CAGATCCTTGCCAGAATATAACCATGCATGTGTCACATGGAACCCACGTG
GAAATCTCACCAAAGGTAAATATGGATTTGCTTCGATTCATATTCAACTG
AAGCAATCTTCACCAAGTTATTACATTTTACCTCATGGTCCAGATGAGTA
TATCGACATTGGACAATTCATGTCAGCTAGTCCTTCCACTCCGGGGGCGA
TGTACCAAGTTAACGTAGAGGGTACTACTCTGCAACGCTTACCGGATCCT
TACCCATCCAAATGCAGAACAAAAGCTATGTCTGAGACATCATCCCTAGT
CAATAAATATTCTCGTCAACTTTGTAATGACTTAAGTAAACCAATCAGTA
AATTACAACGTTGTGGAATTGTGGATGATTTCTCTTATCCATTCCTTGAT
CAAGATTACATATCGAAAAGTGAGAACNGT Coding sequence (CDS) from alignment at scaffold_134:44465..58594+ >TCONS_00047702 ID=TCONS_00047702|Name=TCONS_00047702|organism=Clytia hemisphaerica|type=CDS|length=888bp|location=Sequence derived from alignment at scaffold_134:44465..58594+ (Clytia hemisphaerica) ATGGGAACGTGTCGCATGGGCTTCAGTATTCCTTCTCTTTGCTATCTTTA TATTAATCATTGTTGTATCCAGAATCCNTGGGCTTCAGTATTCCTTCTCT TTGCTATCTTTATATTGATCATTGTTGTATCCAGAATCCAGGACTATACG AGCTATGACATTTACACGGATATGGAAATAAAGTTTGAAGAGAATATAAA ATTCCCAAGTATAACTATTTGTCCCAGTATAATCATCGACCGTCTACAAT CATGGTGCGGTGTTCATGTTATGGACCCTCAGGTACGGCCCCAACTCTTT CATTTGAATATGAGTGACTATTGCAGCAAAGAGAAACGTAAGCAGATAAT GGGAACAGACACCAGTTATTATTCCAATGACTATTACAACCACAATTGGT ACGAAATCAAAGTCACCACGTTAGACTCAGTGATGAATCCAGTATATAAG AATTATTTCAGATCCTTGCCAGAATATAACCATGCATGTGTCACATGGAA CCCACGTGGAAATCTCACCAAAGGTAAATATGGATTTGCTTCGATTCATA TTCAACTGAAGCAATCTTCACCAAGTTATTACATTTTACCTCATGGTCCA GATGAGTATATCGACATTGGACAATTCATGTCAGCTAGTCCTTCCACTCC GGGGGCGATGTACCAAGTTAACGTAGAGGGTACTACTCTGCAACGCTTAC CGGATCCTTACCCATCCAAATGCAGAACAAAAGCTATGTCTGAGACATCA TCCCTAGTCAATAAATATTCTCGTCAACTTTGTAATGACTTAAGTAAACC AATCAGTAAATTACAACGTTGTGGAATTGTGGATGATTTCTCTTATCCAT TCCTTGATCAAGATTACATATCGAAAAGTGAGAACNGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00047702-exon-scaffold_134-1491911889:44465..44739 | TCONS_00047702-exon-scaffold_134-1491911889:44465..44739 | Clytia hemisphaerica | exon |
TCONS_00047702-exon-scaffold_134-1510915933:44465..44739 | TCONS_00047702-exon-scaffold_134-1510915933:44465..44739 | Clytia hemisphaerica | exon |
TCONS_00047702-exon-scaffold_134-1575043694:44465..44739 | TCONS_00047702-exon-scaffold_134-1575043694:44465..44739 | Clytia hemisphaerica | exon |
TCONS_00047702-exon-scaffold_134-1491911889:57538..58594 | TCONS_00047702-exon-scaffold_134-1491911889:57538..58594 | Clytia hemisphaerica | exon |
TCONS_00047702-exon-scaffold_134-1510915933:57538..58594 | TCONS_00047702-exon-scaffold_134-1510915933:57538..58594 | Clytia hemisphaerica | exon |
TCONS_00047702-exon-scaffold_134-1575043694:57538..58594 | TCONS_00047702-exon-scaffold_134-1575043694:57538..58594 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_134 | supercontig | scaffold_134:44465..58594 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR001873 | ENaC |
Vocabulary: Biological Process
Term | Definition |
GO:0006814 | sodium ion transport |
Vocabulary: Cellular Component
Term | Definition |
GO:0016020 | membrane |
Vocabulary: Molecular Function
Term | Definition |
GO:0005272 | sodium channel activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0006814 |
sodium ion transport |
cellular_component |
GO:0016020 |
membrane |
molecular_function |
GO:0005272 |
sodium channel activity |
Blast
The following BLAST results are available for this feature:
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