TCONS_00047702 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047702
Unique NameTCONS_00047702
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1332

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047702 ID=TCONS_00047702|Name=TCONS_00047702|organism=Clytia hemisphaerica|type=transcript|length=1332bp
TCGGCAGCTGCAATATTGAATTGAAGCAAAAGATTAGGTACCAATCTCCT
ACTAAATGACCGCGCGACCTCCTTGGAGTTAGCGCGCGAAAATACCTGAA
AGAAGTCAATGCTCTGCAACTTTTGATTTGTCGATGAGAATGAgaacact
gcaatgtcttcaaattatcaaaaaaacaaaacaaaaaattgaacagaCAG
AACTTCCTGATGtggcaaaaaatataaaaatatattggCAACTTTGATTG
AACCTCATCACCATGAACGGTCAAGGACCATCAGGATATGGAGTTTCCAA
CAGAAACCAAACCTCTAATCCCAGAACTTTAGAATCGAACAAAAACGTAA
TAAATCAGGAAAGACTCGATCGAAAACGGCATCTTAAATCATACACCACC
GTATTTACAGTTCACGGGTTATCAAGAGTATTTCATGGTCAATTATGGGA
ACGTGTCGCATGGGCTTCAGTATTCCTTCTCTTTGCTATCTTTATATTAA
TCATTGTTGTATCCAGAATCCNTGGGCTTCAGTATTCCTTCTCTTTGCTA
TCTTTATATTGATCATTGTTGTATCCAGAATCCAGGACTATACGAGCTAT
GACATTTACACGGATATGGAAATAAAGTTTGAAGAGAATATAAAATTCCC
AAGTATAACTATTTGTCCCAGTATAATCATCGACCGTCTACAATCATGGT
GCGGTGTTCATGTTATGGACCCTCAGGTACGGCCCCAACTCTTTCATTTG
AATATGAGTGACTATTGCAGCAAAGAGAAACGTAAGCAGATAATGGGAAC
AGACACCAGTTATTATTCCAATGACTATTACAACCACAATTGGTACGAAA
TCAAAGTCACCACGTTAGACTCAGTGATGAATCCAGTATATAAGAATTAT
TTCAGATCCTTGCCAGAATATAACCATGCATGTGTCACATGGAACCCACG
TGGAAATCTCACCAAAGGTAAATATGGATTTGCTTCGATTCATATTCAAC
TGAAGCAATCTTCACCAAGTTATTACATTTTACCTCATGGTCCAGATGAG
TATATCGACATTGGACAATTCATGTCAGCTAGTCCTTCCACTCCGGGGGC
GATGTACCAAGTTAACGTAGAGGGTACTACTCTGCAACGCTTACCGGATC
CTTACCCATCCAAATGCAGAACAAAAGCTATGTCTGAGACATCATCCCTA
GTCAATAAATATTCTCGTCAACTTTGTAATGACTTAAGTAAACCAATCAG
TAAATTACAACGTTGTGGAATTGTGGATGATTTCTCTTATCCATTCCTTG
ATCAAGATTACATATCGAAAAGTGAGAACNGT
Run BLAST on NCBI

protein sequence of TCONS_00047702-protein

>TCONS_00047702-protein ID=TCONS_00047702-protein|Name=TCONS_00047702-protein|organism=Clytia hemisphaerica|type=polypeptide|length=296bp
MGTCRMGFSIPSLCYLYINHCCIQNXWASVFLLFAIFILIIVVSRIQDYT
SYDIYTDMEIKFEENIKFPSITICPSIIIDRLQSWCGVHVMDPQVRPQLF
HLNMSDYCSKEKRKQIMGTDTSYYSNDYYNHNWYEIKVTTLDSVMNPVYK
NYFRSLPEYNHACVTWNPRGNLTKGKYGFASIHIQLKQSSPSYYILPHGP
DEYIDIGQFMSASPSTPGAMYQVNVEGTTLQRLPDPYPSKCRTKAMSETS
SLVNKYSRQLCNDLSKPISKLQRCGIVDDFSYPFLDQDYISKSENX
Run BLAST on NCBI

transcript from alignment at scaffold_134:44465..58594+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047702 ID=TCONS_00047702|Name=TCONS_00047702|organism=Clytia hemisphaerica|type=transcript|length=14130bp|location=Sequence derived from alignment at scaffold_134:44465..58594+ (Clytia hemisphaerica)
TCGGCAGCTGCAATATTGAATTGAAGCAAAAGATTAGGTACCAATCTCCT ACTAAATGACCGCGCGACCTCCTTGGAGTTAGCGCGCGAAAATACCTGAA AGAAGTCAATGCTCTGCAACTTTTGATTTGTCGATGAGAATGAgaacact gcaatgtcttcaaattatcaaaaaaacaaaacaaaaaattgaacagaCAG AACTTCCTGATGtggcaaaaaatataaaaatatattggCAACTTTGATTG AACCTCATCACCATGAACGGTCAAGgtataatttgattttagtcgaattt tattttcttgCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgaaattattttt ctgaatttgtaagaaacattattattttaatgtcaaGTTGTCATAAATAC ATACAAGAATGAGAAAAATTAACTTTGAAAGTTAAAACATACACTAAATC CTAAAAAACGGccgggtttttccaaaaatagcctatgaaacattttgatc aaaaatgagaaaatccaccTTGCAGGACCTCTAGTTCATTGTAATTCTGG ATTTTTGACTCAATTTTTGTATATTCTGATGAACTCTacctatttgaaga attttccagCAAAGAAATCTCAATATTCAAAtacaattgacgaaaagata agggaattttgacataggcccaaattttccgtcacggcgtgacaaaaact aaaaagggctacagaaaatcttgtgggttaatttttgtatttctttttta ggTTTCTGATTAACACTAATATGTTGATGtttcatggaaaaaatgaagac cTGATTCCACTCTCTTAGATTTTTACaggctattgaaaattttccgtcac ggcgtgacaaaaactctGACCTACTACTAGTcagtgaaaaaatggatttg aaagCCTCAAATCATAGATTTAACCAGTCCAAGTCCTATACAAAGTTGAT TCAGCTTACAAAAGAGACCTTTTGATTAGTTTTTTGAATCCATAACTGAA AAAACCCTCTAATAAGGACATATGATTCCGAAGCAGTTTTTTCAGTACTG TAGCAGCAGGTTCAGATTTAGCCTATGTTGATTTCTTGGGAACATAGGCA TGTTACATATCAAATTgtcagaaattttatgtagatttcaaaaatggtta gaAGTTGGGGTTGAAAATGAAGTCAATGAGAAGGAAATGCAAAACTTCAT GATTTTTTCTCCTACTTTGGCCTacaattttacaaaaacctgaaaaatgc aATAACAATTTTTTAGAGCGATGTTAAgctctaattttttttgctttttg ttaCAAAATACCATAGGTTCCtataaaaataggttttatagagatttgaa gaccttcattttttgacatttctaaaaattttgggtacgagctttttgct tatagctatAACAAAGcgaattttcagaaaatgagctggAATTCTAAGCA ACTCCAGCCCCCTGCGACCCAAAATCTCGGAgggggggatacttaggcaa atggaggccAGGGCAGATTGCTTAGGCAGATGCCGCCCgtaaagggtacc ttttttggtcCCACTActtttgattaagaaaagttgagactttgatataa tacatttttttgctcagtttgaagagctctatcacgtggtataggtcttt tttgattttgaagaccccccgaAAATCatttcagggcttacaattttgcc taaaaacgcaaaaaatcgcaaattacgtaaaaactgcgggttttcaagct tggtaacattcaaattccgaatcagcaccctcaaattgaccaagaaagat attaaaagtttattcaccgacattttgaaaaaaagtgaaacgttttgagG TACCTGGCCATGGTCTACGTGTATATATCATTGGAAGATTCGTTGTTTTT ATTTCGAAATACTGCAGAATACtcactttcgcgaggtcgaaaaattgaca tttttactttcgcgattttgacgaaNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNttttttttttttttctactttagtatgtttcat ttttcatcttagTTATATACTTTTTGTGGTCACTTTAGCTTTAGGAGGTG CTGTGATCCTCACCGAGGCCTATCCCCTTGCATGGGAAGgcatctgtctg tctgtctgtctgattttgacgaaaaaatccttttttgcaAGCATCAACTT TCGCGAATTATAACATAAAAATAACAAGACGAcctaaagtcgaaaatttc gcctaggatttgaactgcatgggaaaaataAGAAGTTGacatctacttta catcgagccttgatgaaacaatttcacAAGAACAACGGGgcttaaaatca ctaaaaaataagaccaatttaagaacaattgttgtttaatttttaagaac tcttataaagtatatgcttgtcataagtaaatatgctcatattgcacgcc atcccttgtttactttgtaagaattaattactgaaaggtatatcaccgtc tatgatttgattctcataaagtaaatgcttataagaaaaatgaatatgct catattgtgctccgtcccttgtttactttgtaagaactaattaacgaaag gtatgtcaccgtctatcgagagttattgatttgattcttataaagtatgt gcttataagaaaaataaatatgttcatattatgcgtcatcccttgtttac tttgtaagaactaattaccgaaaggtatatcaccgtctatcaacagttat tgatttgattcttataaagtatgtgcttataagaaaaataaatatgttca tattatgcgtcatcccttgtttactttgtaagaactaattaccgaaaggt atatcaccgtctatcaacagttattgatttgattcttataaagtatgtgc ttataagaaaaataaatatgttcatattatgcgtcatcccttgtttactt tgtaagaactaattaccgaaaggtatatcaccgtctatcgagagtttttg atttgattcttataaagtatatgcttataagaaaaataaatatgctcata atgtGTACCgtcctttgtttattttgtaagaactaattaccgaaaggtat atcaccgtctatcaagagttattgatttgattcttataaagtaaatgctt ataagaaaaatgaatatgctcatattgagcgccgtaccttgtttactttg taaaaactaattaacgaaaggtatgtcaccgtctatcaagagctattgat ttgattcttataaagtaaatgcttgtaagaaaaataaatatgctcatatt gagcgccgtcccttgtttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNtgctcatattgtgcaccgtcctttg tttactttgtaagaactaattaccgaaaggtataccaccgtctatcgaga gttattgatttgattcttatagagtaaatgcttataagaaaaatgaatat gctcatattgagcgccgtcccttgtttactttgtaagaactaattaccga aaggtatgtcaccttctatcaagagctattgatttgattcttataaagta tatgcttataagaaaataaagaaaaaacaaaaactgtgaagctaaagaca caaagatatatgacNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Ncgaaaatcgtccgtggttatacgagcgtgtaatttgtaaattaatttta gtgagttcgtccaccgtatcaagtactttcgttttctcaaaaaaaatcca CCAACAAACCACGATCCACCACAGAAGctgatcgtaatactttcgctagg cgaaattaaaaatttatacgctatttctatttctatccatttatttgcat aagcctAAAAAAACTAACAtcgcaaatatttaacaaaaacttgtttataa aaataaaaaagtataaaaaggaagaagaaTATTATACAATAATAAATAGT TATACAATAATGAATAGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNGTCCGATTGAAGATGGCCGTTCTCGTCGACTAATGGTGCGACTCC GACAATGTCTCTACGCTttgattttatatatttaaaaagctttttcttgT CTCCACCAACAGAATTCTTGATAAAGATACTTTTTGCTTTGTTGTATAGT TTACTTGCCATACGTGAACATTCTTGAAACCTCTTCCAATCTTTTGGGTC TTTAGTAGATTTATAACGTCTGTACCTACGTTTTTTCATTCTAGCTGCTC TTTTACATTCGTGGGTGAACCAAGGTTGAGAAAAGCGTTGCGAGGTTATT TTGGTTGGTACATGTTCTTTTTGAGTGTTCAACATTACTGTCTTAATATC ATTCCAGAGGTCGTTGATTGGCGTGTCAATTGTGTGGTTTTGGCAGGCAG TAGTCAAGTTCTTTTTCATGTCTGATTTCAAGGCTTCAATATCTGCTCTG TTCCAACAATTGATAATTCGTTTCACTGGTTTATGACGTTTAGGGCAGCA GAATGTGTCAGCAAGGATTCCAGTGTCGTGGTCTCCAAAACCCATAGTAG GTGTACATGTGTTGAGAAGACCATGTCGATTTGTTAGTAGTAGGTCAAGT GTGTTTTCTAAGCGTGTAGGAAAATCTACCAGCTGCTTCAATGCACATGT CTCAAAAGTTTCTAGAAAGTTTTCGTTCAGTGCTTTTGGATATTGATGGC TTGTGATGCTGCTATTCAACCAATCAATATCTGGAAGGTTAAAGTCTCCT CCTATCCATATGGGATTGTTCTTGTATTTTTTACATATTTGCTCGATTTC TGATATTAATTGATTATTTTGGATGTCTGTGTTGTACATTGAGCGGTAAC ATGCACAAATTATCATAGGTTTATCAAGAGTTTGTACTTTCAAGGAAACA ATTTCTGCGGTTTCGTGTTTTATTTCATCAATAATTAGTTCCTCTTTATA AATTATGATCACACCACCTTTGCTGTCAGGTCGGTCTTTGCGGTCCTTGC GTCTTTGCTAAATAACGGCTTACTGTAGAAGaacaaatatttcttgaatc gGATTGAAATGGAATTGGAACTTTTGCTTTTTTTACTTATACGAGGCATT AAATGTGATAAAATGTGCCATTATACCCGGGGATTAATGCACATactgta tttttataagcaatccCAATTTTTGGCTCAGGTCTGGAGTTGCTAAGGAT TTTCCGGATTTTAGCCAAAAAGTTGCATATggattttgagccaaaaatgc cAAGCAACTTCAAAAATTCTggctttttatttctttcccTGTTCAAAATA CCTTAAATTTGGTATTCAAGAACTATCGGTACACATTTTAATGCCAATTT ATGCCAAAAATCCCTCTTTTTAAAGGAATTTTTGGTTATTTCCCTGTTTA TGCTCAGTTTCAGGGCTAGGTTGCTAAGaccaatgggcttttccagaaaa aaaccgtacaccccctgttgaggagctccaaccttttgtgaattATCCCC TTgaaattccaggcaattttaggatcatacccctctggaattccgaattt ttacagattttcattcattacccccatggaattccacttatttttgacgg ttttttgtctactgctatggaattccactgcatttcaaaccataccccct tggaatggaaaaagactcctcaacagggggtgcacggtttttttctggaa aagcccaatagccagatttaattttttggccattctcAGGATTATACCCT CAGCAATTACTTGGCTgctttaaataaaaaatgtgtaatctTACATTTTA TTCTATGTTTTacggattttttattttgtcaagaatgtttcatgagcata aactttcgcgactGGCCCATCCTAGCAAGAAGAATCTTCAAATACAATTT CTTTCTCGAAAAGGGCTAAAACTCGCGAAAATCGAGAAAGTTTCTACTAT TACTAAGTTAAAAGTTATTACGTGCCTAAAGTAATCAAATTTCAAGCTAA AGACCCGAAGGAGTTGATGATGTAATATTTTGCGTTGGAAATGCAACGAG GCCTGACAATTTCAGAGTTGCTTTTTACGAGTTATTTTTCTCCGAGTTAT TTATTCTGAATTGTAGGAACTCCGTCTTTTGAATAAAGTCTTTTAGCCTG TTAAAGCCTAATAGGTCAAAAGACAAAAGTTTCAAGAcaattcaagaagt atttgtccctctactGTAAAGGcatttttcatgtgaaaattctcattttt acatctcgattcgcgaaagtttatgctcgcgtaagtaaaatattgtaaat ttcGCAATTCGTTTCGacctcgcaaaagtttctgctcagCCTCAGGATTT CAGGATTTCGAACTTTAAATTGTCATATCTTTTTGTGTGTTGGAGTATGA GTCTTGTTGTACTTTTTGTACAATTGAACAATCATCTTTTTTTAgttcga tttaaaaaaatcgccaattttttactcattttaggGGTTATAAGTTTTAA CTACAACATCAGTTTTTTGGCCTGAAAAACTTTTGCCAGGCCTAATTCGC GGGCCCCctctcaaaaaaactttaaaatcctATCTACTTTCGAACCAATT GCATGCCTAGTTGACCCCTTACTATTAGAAATGGTATAAAAATCCAACTC TCAGACCCGGAGAGAGGGcattctattttgaaaaaagtttcaaaacagtA ACTAGTATTTTCCAATTCTGATAAAACCTGGCACAAATTCATATTTACAG TAGTAGTGCACACTTTTAAATCAATTGGATAAGGAGTTAcgttttttttg gtaaaaaacaTCAACAGTGCTATACAAGACGAAATTCTATCGTTATGACt ttcttttaactttttctttacAGGACCATCAGGATATGGAGTTTCCAACA GAAACCAAACCTCTAATCCCAGAACTTTAGAATCGAACAAAAACGTAATA AATCAGGAAAGACTCGATCGAAAACGGCATCTTAAATCATACACCACCGT ATTTACAGTTCACGGGTTATCAAGAGTATTTCATGGTCAATTATGGGAAC GTGTCGCATGGGCTTCAGTATTCCTTCTCTTTGCTATCTTTATATTAATC ATTGTTGTATCCAGAATCCNTGGGCTTCAGTATTCCTTCTCTTTGCTATC TTTATATTGATCATTGTTGTATCCAGAATCCAGGACTATACGAGCTATGA CATTTACACGGATATGGAAATAAAGTTTGAAGAGAATATAAAATTCCCAA GTATAACTATTTGTCCCAGTATAATCATCGACCGTCTACAATCATGGTGC GGTGTTCATGTTATGGACCCTCAGGTACGGCCCCAACTCTTTCATTTGAA TATGAGTGACTATTGCAGCAAAGAGAAACGTAAGCAGATAATGGGAACAG ACACCAGTTATTATTCCAATGACTATTACAACCACAATTGGTACGAAATC AAAGTCACCACGTTAGACTCAGTGATGAATCCAGTATATAAGAATTATTT CAGATCCTTGCCAGAATATAACCATGCATGTGTCACATGGAACCCACGTG GAAATCTCACCAAAGGTAAATATGGATTTGCTTCGATTCATATTCAACTG AAGCAATCTTCACCAAGTTATTACATTTTACCTCATGGTCCAGATGAGTA TATCGACATTGGACAATTCATGTCAGCTAGTCCTTCCACTCCGGGGGCGA TGTACCAAGTTAACGTAGAGGGTACTACTCTGCAACGCTTACCGGATCCT TACCCATCCAAATGCAGAACAAAAGCTATGTCTGAGACATCATCCCTAGT CAATAAATATTCTCGTCAACTTTGTAATGACTTAAGTAAACCAATCAGTA AATTACAACGTTGTGGAATTGTGGATGATTTCTCTTATCCATTCCTTGAT CAAGATTACATATCGAAAAGTGAGAACNGT

Coding sequence (CDS) from alignment at scaffold_134:44465..58594+

>TCONS_00047702 ID=TCONS_00047702|Name=TCONS_00047702|organism=Clytia hemisphaerica|type=CDS|length=888bp|location=Sequence derived from alignment at scaffold_134:44465..58594+ (Clytia hemisphaerica)
ATGGGAACGTGTCGCATGGGCTTCAGTATTCCTTCTCTTTGCTATCTTTA
TATTAATCATTGTTGTATCCAGAATCCNTGGGCTTCAGTATTCCTTCTCT
TTGCTATCTTTATATTGATCATTGTTGTATCCAGAATCCAGGACTATACG
AGCTATGACATTTACACGGATATGGAAATAAAGTTTGAAGAGAATATAAA
ATTCCCAAGTATAACTATTTGTCCCAGTATAATCATCGACCGTCTACAAT
CATGGTGCGGTGTTCATGTTATGGACCCTCAGGTACGGCCCCAACTCTTT
CATTTGAATATGAGTGACTATTGCAGCAAAGAGAAACGTAAGCAGATAAT
GGGAACAGACACCAGTTATTATTCCAATGACTATTACAACCACAATTGGT
ACGAAATCAAAGTCACCACGTTAGACTCAGTGATGAATCCAGTATATAAG
AATTATTTCAGATCCTTGCCAGAATATAACCATGCATGTGTCACATGGAA
CCCACGTGGAAATCTCACCAAAGGTAAATATGGATTTGCTTCGATTCATA
TTCAACTGAAGCAATCTTCACCAAGTTATTACATTTTACCTCATGGTCCA
GATGAGTATATCGACATTGGACAATTCATGTCAGCTAGTCCTTCCACTCC
GGGGGCGATGTACCAAGTTAACGTAGAGGGTACTACTCTGCAACGCTTAC
CGGATCCTTACCCATCCAAATGCAGAACAAAAGCTATGTCTGAGACATCA
TCCCTAGTCAATAAATATTCTCGTCAACTTTGTAATGACTTAAGTAAACC
AATCAGTAAATTACAACGTTGTGGAATTGTGGATGATTTCTCTTATCCAT
TCCTTGATCAAGATTACATATCGAAAAGTGAGAACNGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030380XLOC_030380Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047702-proteinTCONS_00047702-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047702-exon-scaffold_134-1491911889:44465..44739TCONS_00047702-exon-scaffold_134-1491911889:44465..44739Clytia hemisphaericaexon
TCONS_00047702-exon-scaffold_134-1510915933:44465..44739TCONS_00047702-exon-scaffold_134-1510915933:44465..44739Clytia hemisphaericaexon
TCONS_00047702-exon-scaffold_134-1575043694:44465..44739TCONS_00047702-exon-scaffold_134-1575043694:44465..44739Clytia hemisphaericaexon
TCONS_00047702-exon-scaffold_134-1491911889:57538..58594TCONS_00047702-exon-scaffold_134-1491911889:57538..58594Clytia hemisphaericaexon
TCONS_00047702-exon-scaffold_134-1510915933:57538..58594TCONS_00047702-exon-scaffold_134-1510915933:57538..58594Clytia hemisphaericaexon
TCONS_00047702-exon-scaffold_134-1575043694:57538..58594TCONS_00047702-exon-scaffold_134-1575043694:57538..58594Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_134supercontigscaffold_134:44465..58594 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
46.1242 44.886 23.4651 19.7374 4.21775 2.6596 4.50842 4.67703 4.79194 4.64955 4.96106 3.93449 4.13913 3.40391 7.96489 7.19996 11.692 12.1297 6.51509 6.60672 11.5154 9.52028 15.1773 13.6008 208.635 115.699 5.37153 4.11456 9.71289 13.3255
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001873ENaC
Vocabulary: Biological Process
TermDefinition
GO:0006814sodium ion transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005272sodium channel activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006814 sodium ion transport
cellular_component GO:0016020 membrane
molecular_function GO:0005272 sodium channel activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047702 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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