TCONS_00047701 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047701
Unique NameTCONS_00047701
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length459

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047701 ID=TCONS_00047701|Name=TCONS_00047701|organism=Clytia hemisphaerica|type=transcript|length=459bp
TCTAAAATGGTGACAACTTGAATAATTAATCTTTTGTCTGTCAAGTTAAT
ACTTTGAATAATAATTTTTGTAAAGTAACGAAgtgtaaattttcttcaaa
gttgaaatcagttgaaagattgaaaattaaaaaatgattacCTTTATTTA
ATACTGAAACTGCAGCTAGGGCAAGTCATAAGCCGACTTCGATTTGATAT
CccttgaaaaccaaaatctttATATTCATGACAGAGAAAGCCGAATCTTT
TCTTTGTCCCATTTTAAACTCAAGGATAACATTAAGGAGATAACGCTTTG
AATTAAGGAGATCACATTTTGATATTAAGGAGATAACATTTTGATATTAA
GGAGATAATCATTTCGTGTTCTTCACATTAGGGAGATGATGGTGGTGACG
GAGACGAAGGAGAAGAAGGACCAATTGGACCACCAGGACCTCCAGGAAAT
GCTGCCGGC
Run BLAST on NCBI

transcript from alignment at scaffold_134:1727..2185+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047701 ID=TCONS_00047701|Name=TCONS_00047701|organism=Clytia hemisphaerica|type=transcript|length=459bp|location=Sequence derived from alignment at scaffold_134:1727..2185+ (Clytia hemisphaerica)
TCTAAAATGGTGACAACTTGAATAATTAATCTTTTGTCTGTCAAGTTAAT ACTTTGAATAATAATTTTTGTAAAGTAACGAAgtgtaaattttcttcaaa gttgaaatcagttgaaagattgaaaattaaaaaatgattacCTTTATTTA ATACTGAAACTGCAGCTAGGGCAAGTCATAAGCCGACTTCGATTTGATAT CccttgaaaaccaaaatctttATATTCATGACAGAGAAAGCCGAATCTTT TCTTTGTCCCATTTTAAACTCAAGGATAACATTAAGGAGATAACGCTTTG AATTAAGGAGATCACATTTTGATATTAAGGAGATAACATTTTGATATTAA GGAGATAATCATTTCGTGTTCTTCACATTAGGGAGATGATGGTGGTGACG GAGACGAAGGAGAAGAAGGACCAATTGGACCACCAGGACCTCCAGGAAAT GCTGCCGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030379XLOC_030379Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047701-exon-scaffold_134-1491911889:1727..2185TCONS_00047701-exon-scaffold_134-1491911889:1727..2185Clytia hemisphaericaexon
TCONS_00047701-exon-scaffold_134-1510915933:1727..2185TCONS_00047701-exon-scaffold_134-1510915933:1727..2185Clytia hemisphaericaexon
TCONS_00047701-exon-scaffold_134-1575043694:1727..2185TCONS_00047701-exon-scaffold_134-1575043694:1727..2185Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_134supercontigscaffold_134:1727..2185 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.666182 1.4539 1.59078 1.39464 0.20497 0 0.586873 0 0.123526 0.153319 0 0.0966085 0.0973952 0 0 0.445998 0.43886 0 0 0 0 0 0 0 0.323868 0.29551 0 0 0.339331 0.176338
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047701 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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