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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047685 ID=TCONS_00047685|Name=TCONS_00047685|organism=Clytia hemisphaerica|type=transcript|length=228bp
AACACCAACAAACAAATATACAAGACACACAATGTCAACGGAAGTCACTT
TAGAACATTTAGAAGCTCTCATTCACCGTGATGACGGAGCAAAACCGGCA
GCTACAGGCGTACAAAACCTGAATACAGATCTGTCGGCACTAACAGCTGC
AATGTTTGGAATCGCTGGTTCTATAGGTGCCAAAGATGACGATGAGGTTT
GCCGCCAAAGAAGTTTTACAACTGCAAC Run BLAST on NCBI transcript from alignment at scaffold_133:498164..503582- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047685 ID=TCONS_00047685|Name=TCONS_00047685|organism=Clytia hemisphaerica|type=transcript|length=5419bp|location=Sequence derived from alignment at scaffold_133:498164..503582- (Clytia hemisphaerica)
AACACCAACAAACAAATATACAAGACACACAATGTCAACGGAAGTCACTT
TAGAACATTTAGAAGCTCTCATTCACCGTGATGACGGAGCAAAACCGGCA
GCTACAGGCGTACAAAACCTGAATACAGATCTGTCGGCACTAACAGCTGC
AATGTTTGGAATCGCTGGTTCTATAGGTGCCAAAGATGACGATGAGGTTT
GGATTTGTTTTAACTTTTTTGTTTCTTCTTTATGAGTAAGCCATTTATTT
CATCGTCGAAAGGAATATCGGCTTAACGGTATCAAGACCATTGAGTTTAA
AGCCCATGATTTGCGCTGCATTTATAATGACGGATTGAATATAGCTCATT
CTTTAGTATATTTTCGAAATCTGACGATAAATTTTACTTTATATCTGTTG
TTGCGTGAACCAAGTTGGTCAAGCTTTTGGATAGGAAATCAGCCATGATG
ATGGCTTCATTTCCCATCGAAGAGTTTCGGATCTAGCCCATTCGATGGAA
ACAATGATCAGGACCACTGCACTCTGATAACGACTTTGTTTTTGTCTAAA
ACTTCGCATGTTTTTGCATCTAGCTAAAGGTAGGCCGTTATTGAGGCGCA
ATCAGCCCTGATTACTCATGGTATGTTTAGCCTGTGAAGTTGTTGTTTCT
CCTTTCTTCGTTTTTCCGATTGTACTTTTATCATCAACAAAAAATATGAA
TTTATAAAAAATTCACTTTCTTGTGACTGGTGGCGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGATTCCAAGAGAACTTAAATCTTTGAGGCGGATTCCTCAAAAAGCCT
CCAAAAAAGGGGAATTTATGATGTTTTCGCATTTGGAAAGAATATGACCG
TGATCAAAGGATCCCCGAAAATCATTAATCGTTTGCGATTAACAAAATCA
TATATACAGCAAAAAAAAAAGAACGGGTTTTCTTTTTTCTTTTAGTTTTT
AGCCTAGATGATGTTATCTACCGTTAGTGATAGTAAAGGCGGGAAAATAT
GGTGGTATGGCGTTGTGGTGGTATACGGAAAAAAATCGGGGGGAGAGTTT
CGAAGAAGACTGACAAACTCTACCGACTGTTTAAACTCTTTTCGGCAAAA
AACCCGTTTTCTTTGGCTTCGGGCTTATTTCTTAGATAGTGATTTGTCTT
AGACTATAGCATAGTCTAGTTTTAGCCAAGTTGATAATGCTTAGGACTTA
CTAGATTACTTTGCGCCAAAACAAATGGCCATAAGATGTATGATATATTC
TGACTACCCTTAAAAAGGGGTAGTTTTTTGTTCAGTCTATCCAATCTGTG
TGATCATCTTGGATAATTAGATTTACTTTTATTTTCACCCAAGTAAATAT
TGCTTTTTAATAATGCTTTAAATGTTTTTTGCAACCTACAAAATTAGTTT
GCGCCAAAAAAGTATATTGTTTGGTTAATTAAAGGTTTGCTTTTTTAATC
CTTTAACTGCCGTGGCATTATTTTACACCCTCGACCTATTTGCCGGCCTA
TTCTTTACACCCTCGACCTTTTTGTCAATGTCGGCATATGCCGACATGGG
AAAAAAGTAGCGATTTTCACTTCATTTTCTGAATAATATATGAAGTATCA
GCCAAGGACTATAATTTTGAGTTGAACATTGTAGAATAGTTATTTTTCAA
CATAGAAAAGTTTTTAACTATTCATTTTTTTCATTTCAAACCATCAAATG
GAAAAATCTTGTAAAAAATGATAAATTTTCGGCAAATAGGTCGAAATTTC
GCATGTCGGCAAATCCTGACAATGGCAAGGAAATCAAAAATGCTCATGTC
GGCATATGCCGACATCGGCATGGAAAGGGTTAATAAGAGTGATATTGTTT
GCTTACTCATCAATTTTAACTCACAAGCTTTATCACATTGGATTGACACG
GATGTGGAGCAAGATTGATCAGAAAGAGGAAAAGAAAAACATATTTTTGC
TTATATCAGCATGATATAACAATAGGTAGACACTGTCCTGATATGAAATA
TGTGTCTGATATGAAACGGGAACACTTAATATAAAAATAAAACCTTTAAT
AATGCTTTAATGTTTTTTACAATCTACAAAATTAGTTTGCGCCAAAAATA
TATATTTTTGGTACGTACATTAAACCCGAAGAGGATAGGTTTTTCTTAGA
AAGATTGATGTTACTGAGGTTGTGTGTACACGTTGTTTATATAAGAGCAA
ACTGTATGATAACCCAAGGCTTTGGTAGCCAAAATAATTAGAACAAGTTG
AGAACATTTTAAGACTTTCCAGACTCTGCCCGAGTTCTAAAAATTACCCC
AAAATACCCACTTAATCGCGACAATTAGAACACTTTGAGAACATTTTTAC
GCTTAAAACTTAAAAAGTTAAGAACACCCAAAAGCTTCAAAAATTTTGGA
TGTTCTTATAAAGAAAACGTGTAACTCACCGATAGTACAAGATTTTCTCA
TAAGAACCAGTAAAATAGGACTGAGCCTAATCTACATTTTACTCTCTAAC
GTCCCGAATAGAAAGGTCCCGAATAGAAAGGGCCCGAATAAAAGGGGTCC
GGAATTTTTCAAAAGATAATTTCCAAAACGGAAAGAAGGCTAAAAGATAA
AAAAACGTGTAGTCTATCCAATCTACGTGATCACGTGTCCTTACACTAGA
ACGATTTTCATTTCAACACTTTCTTTTTGGACTTTTTCGTGAATTGAAAT
TTTCTTGGATATTCACCTCTTACCAGCTCTTCCTCCACCTTCCCCTTTCA
TTGTGAATGAATTGTATATCTGGTCACTAGTCTTACTGGTATTGCATGAG
ACTATTAGCTTTTAGGATGGTTTCCGGGGGGGGGGCACTTAGGCAAAATT
GGGTACGGGGACGTACCGTTGGCCAGGGTCCCTTTTTTAGTCTCTGAAGA
TATCTAAATATCTAACAGGTTTTCAATTTTTACTAATTTTCAATCTATGT
TTCTGACAGGGTCGACTATTTTCGGTGGAAATTAAAAGTTTTTCAATTTT
AAGTTTTTCAATTCTCTTAGTCATTTTGCTACTTTTCAGGGGTGAACATG
GGAAAAGGTTTTGCGTATAACGAGTAGGGTAAGCTTTCTTGACGAGATGA
TTTTCATAGAGACTTTTAGGCGAAAGGCAAAGCTCATGCATTTATAGATT
TTCACTTTTATGAAAACTCAAAATATTATCCTTCATAATTCTATTTAGCA
CTATAGCCTGAGATTCATTTATCATATTTTTCTTCTTTCTTATTGGTCTT
TTATTTGTTTATTTATTTATTGTTGATAGAAAGATATTATTATATTTTTT
GTGATCAAATGAAATTCGATATGATTGAAGGATTGAAATGATTAAAAATG
ATTAGAATCTTAAGCCTAGTTTCAACCCATTTTCTTTCCCTTTTTTTCAT
CGTTGTGGTTTTAACCCTCTTCTACTCGGTGCCAAGACAAATCTATCAGA
AATCTTTTGTCCCAGTACTGTACAGGATGTGCCGAAAATAAGTCCTGTGC
CAGAATACGATCCGAGGTGGGAACTCGATTTTGAAAACGACCGTACGTTC
GGCCGAAAATCAGGTCTAAAATTTGGCTAAAAATCGACCCTTACAGTGCA
ATTTTTCGAAATTAAGAACATTAAAAATTAAGAACAAGCCCAGCCTCAGT
TTGGAAAAAAATGACAAGAAACTACAATTTTTTCCTCTTTTCAAGCAGTT
TGAAACAAACTTAGGAATGGATTTTCTAAATCGAGAGTCAAATATTGTCC
AAATTTTACCAATTTTAAGTGCTCTTTATTTTGCATGATATTGTCGATTT
AGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNGGGCCCCCCCCCCCCCGGGAATA
CGACTAAAAGTATACAATATAAAGCCTATATGTCACCATAGTATAATGTC
ACTTTTGCGTTCGTTTTCAAACAAAAGATAATGATTTCGGTTTTTCAGTA
GCCCTATAGAGAATTAATACTCCTATACATATGGAAAAGCTTTCATATGC
TATACACAAAAAAAAACAGAAAAAAGTCTTAAAATGCAAAAAAAGATTCT
TTTTTATAAGGATAATTATTTAGGGTCTATAATGGTGGTTATTGCTGATA
AAAATAAATCTTCTCAACTAAAATAAATTGTATCCTAAATTTTGAAAATA
TGAATAATATTCCTAAATTTTAGTATTAAAAAGATGCAAAATCATTGCAT
ATGCTTACAGTTGAACTTGCTTAGTTTTATTCTAAAAAAAATCTTCGAAA
ACCCTTCGCTTAAATGAAATGAATGGAAAAGGAATTAGTATAAGGGTTGA
TTGGGGTAACACCGAATCTAAATGTGGTTTATATTTAAATCATGTTTTAA
TAATTAAATTTCTCCACATTTTATTAAGTTTGAATATGTTTTTTTTTATG
TATGTTTCTATACTCAGAAGCGTTTCCTTGAGCGACTCAAATTGATTTAT
CGATTTGCCTTCACGATAAAATAAAAATTATTAATTTTTGCGAATTGATG
GATCGAGAACTTTTTTCAACATGGCATATGATTTGAAATACAATTCTAAG
ACCTTTATTTTTCTTTTTTCCCACTGATATTTTAAGCCTTTCTTTTCTAT
TTTTTTCTTCGTCTTCATTTAGGGCAACGGGGGGTTTAACAAAAAACTGA
TATTTTTGCAGTCTTCTATCGAATCATAGAAAGAAAAACTAAGAATCACC
AAAATCTGGTTCTTTTTTTATTTATTTTGTTTTGTTTTTTCTTTTTCTTC
ATTTTTCCCAAAAAAATATTTAAAAAAACAGAGGGACAGTCTGGGACCAA
TAGGTCCGTAAAAAAGGGCAAACATAGCATGGCTAGATTTTGAAAGAAAA
CAACTTCATCTTGATTTTTCAATGAAGCCGGCAGAAGGTCCAGAGGTTTG
GTACTTCATTTGATTTCGAATCGATTTTCTTTTTACAGTGGTTCATTACA
GTAGAGCAGATATGTTTACTTTAGACAACATTCTACCTATAGTTGAATGA
GTCTCTTTAACTCGAACCTCTATAACTCGAAATTTATGTTTCCGTTTGTG
TTCGAGTTATTGAGACTCTGTATTATAACAATTTCAGGTTTGCCGCCAAA
GAAGTTTTACAACTGCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047685-exon-scaffold_133-1575043694:503387..503582 | TCONS_00047685-exon-scaffold_133-1575043694:503387..503582 | Clytia hemisphaerica | exon |
| TCONS_00047685-exon-scaffold_133-1575043694:498164..498195 | TCONS_00047685-exon-scaffold_133-1575043694:498164..498195 | Clytia hemisphaerica | exon |
| TCONS_00047685-exon-scaffold_133-1510915933:503387..503582 | TCONS_00047685-exon-scaffold_133-1510915933:503387..503582 | Clytia hemisphaerica | exon |
| TCONS_00047685-exon-scaffold_133-1510915933:498164..498195 | TCONS_00047685-exon-scaffold_133-1510915933:498164..498195 | Clytia hemisphaerica | exon |
| TCONS_00047685-exon-scaffold_133-1491911889:503387..503582 | TCONS_00047685-exon-scaffold_133-1491911889:503387..503582 | Clytia hemisphaerica | exon |
| TCONS_00047685-exon-scaffold_133-1491911889:498164..498195 | TCONS_00047685-exon-scaffold_133-1491911889:498164..498195 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_133 | supercontig | scaffold_133:498164..503582 - |
Blast
The following BLAST results are available for this feature:
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