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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047680 ID=TCONS_00047680|Name=TCONS_00047680|organism=Clytia hemisphaerica|type=transcript|length=688bp
GTCGACGGATGTTGATCATAGCGTGCATTTTATGCTATTCAATCTTTATC
TACTCTATAGTCCTTCTTATTTGCGTCCGAAAGACACTCTATGGTTGGAT
GACTGTACCTAGTTTGTTGACAGCGCTATTGTGTTCATCCATCTTCGTTA
TCATTTTGAAGAACATTCTATCTCCTTCCACCACCTTCATTACTGGCGAG
TCAAAAATCATCAATCTAAAAGATTATGTCATGGGCTGGTCATTCTACTA
TTTTGTGTTTGGTTATTTATTCTTGGTAACTTCAATGTTCTTCACACTCA
AAGACAAAGACAAAGGAAGAACATGGAATAATTCAGTTACACCAATGATT
GGGGCAATTAGCCCTCCCGATGATTTGGACCTACATTCAAGCCATCCATC
TCACGAATGATGATCTTTTCTCTAGTGAGGCAAGAGAAGCATGAAACTTA
TGTTGTTGAGATTGATgtgaaattcatttcatttaaaacaTTATTTTACT
CGATTTTATCTTCTCTTCCCCATTTTCATCgtctatttttaatttttagt
gaATTGTATTACTTCAAGTAAAATGTCCGAATCTGGTATTTAGGAGGGAT
TTTATTCTTATTATCGTATATGTAGGCTTCCCTTATATTcacgatatgca
ccattgcaatgtcttctgacattacatcatggtcccaa Run BLAST on NCBI transcript from alignment at scaffold_133:460130..461702- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047680 ID=TCONS_00047680|Name=TCONS_00047680|organism=Clytia hemisphaerica|type=transcript|length=1573bp|location=Sequence derived from alignment at scaffold_133:460130..461702- (Clytia hemisphaerica)
GTCGACGGATGTTGATCATAGCGTGCATTTTATGCTATTCAATCTTTATC
TACTCTATAGTCCTTCTTATTTGCGTCCGAAAGACACTCTATGGTTGGAT
GACTGTACCTAGTTTGTTGACAGGTAAGGGATTTCTCTGCATGGTATGTT
ATCACATGTCTCACAGCCCCGGTGGAGCTTTTTCTCTCCTGGGGATAAAA
ATTCTTATTGGGAATGTCAATGGGGATGCAAATTCTATTGCTCCAAGTTA
GAAATATCCAGTGGAGATGGATTTGGAGTGCGATTCTTAAATATTGGATT
TCGAGTGGGGATGAAATCAAAATCAATTTTCCAGTGGGGCTGAAATTCCA
GGGTATTTTCTCACCGGAGACAAAATTTTTGGCAAATTTTCCAGTGGACC
TGAGGTCCCAGCGAGTCTCTGACACAGGGGTGTGTTATCGGTCAGCCGGT
TAAACAGCAGTCAAAGCCTTATTAAATTTTATTTATCAGTTTTAAGGCTC
ACAGGGTGATGTAAGTGTTGACTGAATTATTTGTATACTTTAAACTTCTT
GCTCTTTGTATGGAATGTTGATTATTATACCCAGAATGCAATTCTAATAA
AGAATGTGCGTGGTCGTGGGAGATTATTGTAATCCATGCTCGCGATGATC
AATTCTGCTGAAAATATATGTTTTTTACTTCGTATCATGCTTTTTTGATA
ATCATAACTAATAGCTCCCAAATTTTACAGAGATAGCAAATTTGTAGTGG
TAATATCTGATAACATAACAAGGGACTTTCCATTGAAATTAGGTTCCCTT
CAATTTATCCCTATAAGCTAAACATTCTCTCTACAATCCAGGACAAATAT
GTTTGAGAATCACTGAAAATTGTTGCAAAAGCGCCATTGGGGGAGTGACG
TTTAAACGCTCTACTCTCGTCTCATCATTCATTTAAGTCCACGATTGTAG
ATCATTGAGACAGGGGTGTAATATTCTCACAATATTCTCAATACTCTTCT
CATTTCAGCGCTATTGTGTTCATCCATCTTCGTTATCATTTTGAAGAACA
TTCTATCTCCTTCCACCACCTTCATTACTGGCGAGTCAAAAATCATCAAT
CTAAAAGATTATGTCATGGGCTGGTCATTCTACTATTTTGTGTTTGGTTA
TTTATTCTTGGTAACTTCAATGTTCTTCACACTCAAAGACAAAGACAAAG
GAAGAACATGGAATAATTCAGTTACACCAATGATTGGGGCAATTAGCCCT
CCCGATGATTTGGACCTACATTCAAGCCATCCATCTCACGAATGATGATC
TTTTCTCTAGTGAGGCAAGAGAAGCATGAAACTTATGTTGTTGAGATTGA
TGTGAAATTCATTTCATTTAAAACATTATTTTACTCGATTTTATCTTCTC
TTCCCCATTTTCATCGTCTATTTTTAATTTTTAGTGAATTGTATTACTTC
AAGTAAAATGTCCGAATCTGGTATTTAGGAGGGATTTTATTCTTATTATC
GTATATGTAGGCTTCCCTTATATTCACGATATGCACCATTGCAATGTCTT
CTGACATTACATCATGGTCCCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047680-exon-scaffold_133-1575043694:461580..461702 | TCONS_00047680-exon-scaffold_133-1575043694:461580..461702 | Clytia hemisphaerica | exon |
| TCONS_00047680-exon-scaffold_133-1575043694:460130..460694 | TCONS_00047680-exon-scaffold_133-1575043694:460130..460694 | Clytia hemisphaerica | exon |
| TCONS_00047680-exon-scaffold_133-1510915933:461580..461702 | TCONS_00047680-exon-scaffold_133-1510915933:461580..461702 | Clytia hemisphaerica | exon |
| TCONS_00047680-exon-scaffold_133-1510915933:460130..460694 | TCONS_00047680-exon-scaffold_133-1510915933:460130..460694 | Clytia hemisphaerica | exon |
| TCONS_00047680-exon-scaffold_133-1491911889:461580..461702 | TCONS_00047680-exon-scaffold_133-1491911889:461580..461702 | Clytia hemisphaerica | exon |
| TCONS_00047680-exon-scaffold_133-1491911889:460130..460694 | TCONS_00047680-exon-scaffold_133-1491911889:460130..460694 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_133 | supercontig | scaffold_133:460130..461702 - |
Blast
The following BLAST results are available for this feature:
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