TCONS_00047670 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047670
Unique NameTCONS_00047670
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1932

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047670 ID=TCONS_00047670|Name=TCONS_00047670|organism=Clytia hemisphaerica|type=transcript|length=1932bp
cacgcataattattacaatatgcatgatacagtaattatgcatggctcta
tcattgtttttatgactggactacataattattcaacaggacgtcctctg
tcctctttgaaaaaaggtctattgccgaattgcattgaaaatatgcaaaa
cctatgcaaaaagaaagtattaatatcaaacttacatgcataattgacat
tatattaaagtgtggAAGAAAGATCAAATTTGATTctcttaaaaaaacta
aaaataaaatcatgttcactcatctcttagaacaagcacttcaaaaaacc
ataacattagacataaactcaaactgaaaaatcaccaacgaaggtaaaaa
atgatccttatttggctgacggtaaattattctcctgcgAATAGAGCAGC
CAAatgttcaaatcaaaacattgatctgaaccccctGATTTACAGCGGCT
TTTATAATAAAACAggggttttaatattttcttgcacAGGAAAGAATGTT
TGatgtcataattactgcttccAGTTGGCGTGTTTTCAAAGTTTGAGAAG
AAGATACAAGTATGCAACAAAGGGGAAATAGAAGGAACAAAGgaAAGCAG
CCACCGCAACAGCAACAGTTTTACCAACCTTCACAGCAACAAAATTCATA
TACTCCAGAACTATTCGATGATATGTCAGCCTACAACCAACAACCACAAC
AAACCACACCACCAAGTAGTATGATGCAACCCAATCAGCCGATGCAACCA
GCTCAAATGACATTCCCAGGACAAGAGCTTCTACAAGATCCAAACATGGC
AAACATGGCAACTAATATGGCGATGCAATATGGACAGCAGTTTATGCCGG
CTGGTAAAGAGTTTGTTGAAAAGAAGCTTGATCATTTCTTgtcagtttca
aaattgaagTATTATTTTGCTGTTGACACTACTTACGTCCTCAAGAAATT
AGGATTACTTGTCTTCCCATTCGCACATAAGgaTTGGTCTTTGAAATATG
ATAATGCAGAACCAGTTGCTCCTCGCTTTGAGATCAATGCTCCTGACCTT
TATATTCCATCTATGGCTTTCGTTACATATGTATTGGTTTGCAGTGTAAT
ACTTGGTACACAGAATAGATTCACTCCAGAGCAGCTAGGAATGACAGCAA
GTTCAGCATTTGTTTGGTTATGTATTGAATTAATTGTCATCGTAATGATT
ATGTATTTAATTGGTATCTCTGGTAATATCAAATATTTGGATATACTTTC
TTTTTGTGGTTACAAATATGTTGGAATGATATTGACATCAGTATGCGGAT
TACTATTCGAAACCACTGGATATTATGCTTCCCTTTTATGGTGTAGTGTG
GCTATCTCATTTTTCATAGCTCGATCACTTCGCCTTGTCATTAATCCTGA
GGATCATTCAGACAGCGTATCTCGATCAACCAGTGGTAATAAACGACGTC
TATACATTCTACTCACTGTCTCACTTATTCAACCAGTTTTCATGTACTTT
TTAACGAAACATTTGATTCATTATACACCAccgaaaattatgaaaatgtc
tGGATAATAAAAGCAATGGAATCCTTTTTGAGAGAGAAGTTTTTAGTTTT
ATgtcaaattgtgaaattgtaTTTAACAATGGCTTTGGGAAAATCTAGTT
CAGCCATAATATCGAAATATCTGTTGGAGAAATTGGTATTGGGTTCGAAA
ACAATCCACGAATCATCAGTAGAAAATATCGAAGATTGCGGTTTCAGATA
ACATCGTTGTCAGTGAAGACCCGAAGAAGATTCTGACGATTATAACTTGa
tcattttttttaactgacGATTATAACTTGatcatctatatattaatagc
ggtagtctgtatgtcgttttgtcgtctttctttctgtctgtgctactttc
gttttcgcacgcaatgtttttgttcttccaaa
Run BLAST on NCBI

transcript from alignment at scaffold_133:289578..296659-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047670 ID=TCONS_00047670|Name=TCONS_00047670|organism=Clytia hemisphaerica|type=transcript|length=7082bp|location=Sequence derived from alignment at scaffold_133:289578..296659- (Clytia hemisphaerica)
CACGCATAATTATTACAATATGCATGATACAGTAATTATGCATGGCTCTA
TCATTGTTTTTATGACTGGACTACATAATTATTCAACAGGACGTCCTCTG
TCCTCTTTGAAAAAAGGTCTATTGCCGAATTGCATTGAAAATATGCAAAA
CCTATGCAAAAAGAAAGTATTAATATCAAACTTACATGCATAATTGACAT
TATATTAAAGTGTGGAAGAAAGATCAAATTTGATTCTCTTAAAAAAACTA
AAAATAAAATCATGTTCACTCATCTCTTAGAACAAGCACTTCAAAAAACC
ATAACATTAGACATAAACTCAAACTGAAAAATCACCAACGAAGGTAAAAA
ATGATCCTTATTTGGCTGACGGTAAATTATTCTCCTGCGAATAGAGCAGC
CAAATGTTCAAATCAAAACATTGATCTGAACCCCCTGATTTACAGCGGCT
TTTATAATAAAACAGGGGTTTTAATATTTTCTTGCACAGGAAAGAATGTT
TGATGTCATAATTACTGCTTCCAGTTGGCGTGTTTTCAAAGTTTGAGGTG
TGTACTCTTTGTGGATTTGTATAATCAGACAAAAAACTAAGATTTTTTCC
TCAGTAAAGTCAAAACAAACTGGGAGCAAGCTACCTGACCTTGAAACAGA
ATGTTTAAAAAATATATTTTTGCACTGAAATATTTGAAATAAAAAGCCTA
TGTTTATTGAAGGAGTGCAGACTTTATTCAACAAAGAGGGCTCAAATGTT
TTAAGAGCAAGGTTTGGTGGTTGACTTTGGTCTTCAAGCATGTCGTCTAT
TTTTTATCTATTCAATTTTTGGAAGATCTCAAGATGAGTTTTTTGGTAAC
TAGCCTTCTGTTGAAATATCTTTTGTTACTTTGAATAAAATCAGTCTATA
TTGCTCAGATTATCTCAAATTTGTCCGCAGTTTTTCTAATTCAAGATGCC
TTTTGTTAATATTATTGATCTTCTAAGGCGAACCCGAAAAAATTTCTTGT
TTCCGGTCCACCGGCCGGGTGAAAATTTATTTCGTCGTCACCCGGCCGCA
TTTTTTTTTCGTACATCATCGTTAGTTTAGGGTTAGTTTGTTTGTTTGGA
AAACTTTCGTGAATCAGTTTTTGAGGCGTGTGATTTATCGTACGTGATAT
TTTAAAATCACTTGGAATGAAGGTTTTATCCTGATCATTGTTATAGAAAT
GAAATTTTATTCATCTCAAACTAAACCCTGCATTGTTTTTGTTAATTCTT
GCTTGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAATCTAGGCATGCGATG
ATCACACGTGAATTTTTCTTATGCCGAAGCCTGTAGCGGTGTCAAGTTAC
TACAGTAAGGTAAAGAAGACCATCATTTTAACTTCTACGAGTGCTATAAA
AAATCAAGTTTTGGGTTTAGCAAAAAAAAATTTTTTGCGGCCGGCCGGGT
GAGTGTTTTTTTCGTCACCCGGTGGACCGGAAACAAAAATATTTTTAGGG
TTCGCCTAAGTTAGCAGTACGTATGACTGGTGATTTAGCCATATTGAGAG
AATTTTTTTAGAACAAATGATAGTTTACCAATAGCAATACGTAAAGTAAT
TTTATTTTTGTTACGTGATTTCAGTCTTCCCGTGGGTGATTTTTTTTCTC
GATAGAACATTTTTCTCATTGCTGACTTCAGGTCGATTTTAGAAATTTAT
TTCTGCTCTAAATATTGATAAAAAAAGTTTGATTGTTCAGTTCAGCCCTA
AGTTATGAAGTGCTTGTTTTTGCTGTACTTTTTAATCATTGTGCATTCAT
GTCAATGACGAATAATCAGTATCTACTCGAACTAAATGGTATTTATTTTT
AATTAAAAATACATGTTAATGCATTTCAGTATCATTCACATTTCATCCAA
TTCAAAAGTAGACACACAAACATCAATAATTTTTTGATTCTTGCTAGTAC
TACTAATTCTTCATGACTCATAGCATCTGTTTGCAATTTTTGACTTTTGC
AGAAGAAGATACAAGTATGCAACAAAGGGGAAATAGAAGGAACAAAGGTA
CCAAGATTAATCATTTTTCATACATTCACACACTAATTAGTAAATTGCAA
AATATTCTTTAACTGTTAGGCTATACTTGTAAAATGAATTTCTTTTTACA
GGAAAATTGAGTCCTTTAGATTCTTATTGATCTTTACTTTCAAAATTACT
CACCCTAATGACATTCGGAGAACACTCAATGACATCATTTTACGTCACAT
AACTCACACTCTGTACAAAAACATAGAATTGATTATACATACAGTATTTT
CATCAGCAAATTTTTTTTAGGAAAGCAGCCACCGCAACAGCAACAGTTTT
ACCAACCTTCACAGCAACAAAATTCATATACTCCAGAACTATTCGATGAT
ATGTCAGCCTACAACCAACAACCACAACAAACCACACCACCAAGTAGTAT
GATGCAACCCAATCAGCCGATGCAACCAGCTCAAATGACATTCCCAGGAC
AAGAGCTTCTACAAGATCCAAACATGGCAAACATGGCAACTAATATGGCG
ATGCAATATGGACAGCAGTTTATGCCGGCTGGTAAAGAGTTTGTTGAAAA
GAAGGTATCAAACTAATGTGGGTTTTTTACAATGTTTATTTAGAAAAGGT
GTTATTCTGTTGAATTAAATTTGCATCACTCAGAACAATTATAACAAAAT
ACCTTCCGTTGTAATTACTTAGTTTCAGTTCTAGCGTCTGTAAAACTCTT
TGCATTTTCAAAATCATTTCGTGATTGCAATATATCCAAATAATAATAAC
TTTATAGTAACAAATGTTTTGAGTGACAAACTCCGAAAAATTTAACAGAT
TTTAGACAACTGAGAAATTGTTTCCAAGATGGCAGGTCTATGAATATTTC
TAGGAGATATCTGATATTGATATTGACTACTTTTCCATTTTAGCTTGATC
ATTTCTTGTCAGTTTCAAAATTGAAGTATTATTTTGCTGTTGACACTACT
TACGTCCTCAAGAAATTAGGATTACTTGTCTTCCCATTCGCACATAAGGT
GAAAATCATTATTAATGTTATAATTCCAATGTGAAGTACATGGCAAGTTT
CAAGATTTTTTGGTATCAAAACGTCTTATCTTAGCTTCAGATGATGGTTT
TTAGAAAGCATTGAAGGATTATGGAAAGAATCTTTTGGTCTATATTTCAT
TTTTGCTATCCCTTTAAATTCTGACTAGTACATTGACCTTAAGCATGCAC
TCTTTTTCGCTACTATGTAGAAACCACTCTTGAGAGCTGACATGGTTTCT
ACACAGTAGCAAAGAAGAGTGCACACTAAAGAGAATGATTTTTATGTCTG
GTACCTATTTTGACTTTCCAAATGTTACAATTTTGAATCTTTCAATCCTC
AACTTTTGCTTTAAATCATGAATATTCTTCTTCTTTTTTCAGGATTGGTC
TTTGAAATATGATAATGCAGAACCAGTTGCTCCTCGCTTTGAGATCAATG
CTCCTGACCTTTATATTCCATGTAAGTTAAAAATAAAAGCATCCTTGTTT
CTTTAAAAGAGGCCTCTTGTCATGCAGAGTTTGAGCTCTTAATTGAAGAG
GTCTTGAATAAATGTAATCCGACATCGAAGTATTGATTCTGACCAAAAGT
GTGTAAAGACCTCAACTACAAAGGTGATATTGATTTAAGATAATACTGCT
ACGACCAAAGTTATGATAGATGACAATATGTCAAAATGTAGAATATTTTC
AAGAGGTGTCTCAACTAAAAATTAAGAATAAGTCAGCTTGAATTTGCTGC
ATTTAAATTTTCCTGTATTATTTCTAGCTATGGCTTTCGTTACATATGTA
TTGGTTTGCAGTGTAATACTTGGTACACAGAATAGGTATGACTTTAAAAG
GTTACCATTATCCCTTAAATTTTAAGGGGGAGGGGGGTTACTAGGGTTGT
GAGCTGACGGGTATGTTCCGCCCCACTTTCAACCCTCGCACCCTTAGCAG
GACTAAAAAGGAGGAAAATAGGAGAAATTTGTGAAATATTTTTAATATCC
CCTTATTGGGACCAAATTTGACCAATTTAAGATTTTTTACGGGGCAAATA
ATTCAAAAAATTGAAATTTCCCTATTTTTCCGACCCTAAGTGGGACTGAA
TTTTCTTCTTAAAAAACACTAAAAATGCTTGAATAAGTGGACCTTGAAGT
GTATTTTGTTTTGTAAAAATAGTTAAAAGTTTCCCTAAAGCCATTTAGAC
TCATTGTGAGAGGATTATATTTAAATTTAACAAATACCATCAAGGGTTTT
GCTTTGTGTTTGGTAGGATTGCGAATGAAAAATTAACTCGCGATCTCTAG
ATTCTAGACCGGCGAATTCTTAGGAGTGTGTTGAGTGTATTGATTAGCAT
AAATATGTACTTGATGCGACGAACAGAACTTATCAAACGGCGAATTGGAA
TTTTTTTCGAATAAGACCCCTGATGGGTGACCATTCATTTCCTTTCATTT
AGATTCACTCCAGAGCAGCTAGGAATGACAGCAAGTTCAGCATTTGTTTG
GTTATGTATTGAATTAATTGTCATCGTAATGATTATGTATTTAATTGGTA
TCTCTGGTAATATCAAATATTTGGATATACTTTCTTTTTGTGGTTACAAA
TATGTTGGGTAGGTAAATTGTTGAATTGAGAACGTTCAAAGTAAAAATTT
ATATATATGTATTCTGAGGTAGCTAATTGTCATTTGTGCGTTTTTCAAAA
TTCCTTTTTGTCCACTACTTGAAATTATTGAATTATTGTCACATCGGGAA
AAACTACATTACTTTGATTCTTTTTTACAGAATGATATTGACATCAGTAT
GCGGATTACTATTCGAAACCACTGGATATTATGCTTCCCTTTTATGGTGT
AGTGTGGCTATCTCATTTTTCATAGTAAGTATTATTGTTCATATATAATT
ATTTAAACCTAGTTATACAGACACACAAACTCTTGAGTTTGTGTCAAAAT
AGGTGGGGTTTGTACTAAAATCTCAGACACATAATTTGTAATGAAGAATT
TTTTCTCAAAAGTGCAGAAAACTTTTTTTGCATAAGTTGATACTTTGAAT
TATGCTACTTAATGAATTGGGCNACTACATTACTCGGAAAAACCTTCATA
ACTCGTGAGGACTCCAATTACTCGAACGAGTCTCGTCATTTAAAGAGAGT
TTTAGCTTTTTTCGCTTTTGTACACATTCTATTTCTTTGCTATTTTTTTC
ACTATCTCGTAAAGTAAAAGCTTTTTAGATAATTTAACCATGTCAAACGA
TAGCCCTTGACCCAATATGCATTTGTGGTGTAATGTCAGTGGTGGTCAAA
GCAAATTTTTCAGGAAATTAGCAATCCCAGGGCTTGCCCGAAAATTAGCG
TTGCTTGTAAAAAAGATGTGTATTACTCATGGGATTAAAATGTCAGGATT
TAACCCATAAAATGGAATTATTGTATTGTCTTTGCAGACCTTTCTCAATA
TTTTGATTCTTTTTCACAGAATGATATTGACATCAGTATGCGGATTATTA
TTTGAAGCCACTGGATATTATGCTTCCTTATTATGGTGTAGTGTGGCTAT
CTCATTTTTCATAGTAAGTTTTATTGTTCATATATAATTATTTAAACCTA
GTTATACAGACACACAAACTCTTGAGTGTGTGTCAAAGTAGGTGGGGTTT
GTACTAAAATCTCAGACACATAAATTTAATTCGATTTAGTTTCATTCACT
TTCTTGTTCTCCACTTAGGCTCGATCACTTCGCCTTGTCATTAATCCTGA
GGATCATTCAGACAGCGTATCTCGATCAACCAGTGGTAATAAACGACGTC
TATACATTCTACTCACTGTCTCACTTATTCAACCAGTTTTCATGTACTTT
TTAACGAAACATTTGATTCATTATACACCACCGAAAATTATGAAAATGTC
TGGATAATAAAAGCAATGGAATCCTTTTTGAGAGAGAAGTTTTTAGTTTT
ATGTCAAATTGTGAAATTGTATTTAACAATGGCTTTGGGAAAATCTAGTT
CAGCCATAATATCGAAATATCTGTTGGAGAAATTGGTATTGGGTTCGAAA
ACAATCCACGAATCATCAGTAGAAAATATCGAAGATTGCGGTTTCAGATA
ACATCGTTGTCAGTGAAGACCCGAAGAAGATTCTGACGATTATAACTTGA
TCATTTTTTTTAACTGACGATTATAACTTGATCATCTATATATTAATAGC
GGTAGTCTGTATGTCGTTTTGTCGTCTTTCTTTCTGTCTGTGCTACTTTC
GTTTTCGCACGCAATGTTTTTGTTCTTCCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030354XLOC_030354Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047670-exon-scaffold_133-1575043694:296113..296659TCONS_00047670-exon-scaffold_133-1575043694:296113..296659Clytia hemisphaericaexon
TCONS_00047670-exon-scaffold_133-1575043694:293863..293907TCONS_00047670-exon-scaffold_133-1575043694:293863..293907Clytia hemisphaericaexon
TCONS_00047670-exon-scaffold_133-1575043694:293306..293589TCONS_00047670-exon-scaffold_133-1575043694:293306..293589Clytia hemisphaericaexon
TCONS_00047670-exon-scaffold_133-1575043694:292862..292966TCONS_00047670-exon-scaffold_133-1575043694:292862..292966Clytia hemisphaericaexon
TCONS_00047670-exon-scaffold_133-1575043694:292389..292467TCONS_00047670-exon-scaffold_133-1575043694:292389..292467Clytia hemisphaericaexon
TCONS_00047670-exon-scaffold_133-1575043694:292025..292082TCONS_00047670-exon-scaffold_133-1575043694:292025..292082Clytia hemisphaericaexon
TCONS_00047670-exon-scaffold_133-1575043694:291252..291407TCONS_00047670-exon-scaffold_133-1575043694:291252..291407Clytia hemisphaericaexon
TCONS_00047670-exon-scaffold_133-1575043694:290986..291079TCONS_00047670-exon-scaffold_133-1575043694:290986..291079Clytia hemisphaericaexon
TCONS_00047670-exon-scaffold_133-1575043694:289578..290141TCONS_00047670-exon-scaffold_133-1575043694:289578..290141Clytia hemisphaericaexon
TCONS_00047670-exon-scaffold_133-1510915933:296113..296659TCONS_00047670-exon-scaffold_133-1510915933:296113..296659Clytia hemisphaericaexon
TCONS_00047670-exon-scaffold_133-1510915933:293863..293907TCONS_00047670-exon-scaffold_133-1510915933:293863..293907Clytia hemisphaericaexon
TCONS_00047670-exon-scaffold_133-1510915933:293306..293589TCONS_00047670-exon-scaffold_133-1510915933:293306..293589Clytia hemisphaericaexon
TCONS_00047670-exon-scaffold_133-1510915933:292862..292966TCONS_00047670-exon-scaffold_133-1510915933:292862..292966Clytia hemisphaericaexon
TCONS_00047670-exon-scaffold_133-1510915933:292389..292467TCONS_00047670-exon-scaffold_133-1510915933:292389..292467Clytia hemisphaericaexon
TCONS_00047670-exon-scaffold_133-1510915933:292025..292082TCONS_00047670-exon-scaffold_133-1510915933:292025..292082Clytia hemisphaericaexon
TCONS_00047670-exon-scaffold_133-1510915933:291252..291407TCONS_00047670-exon-scaffold_133-1510915933:291252..291407Clytia hemisphaericaexon
TCONS_00047670-exon-scaffold_133-1510915933:290986..291079TCONS_00047670-exon-scaffold_133-1510915933:290986..291079Clytia hemisphaericaexon
TCONS_00047670-exon-scaffold_133-1510915933:289578..290141TCONS_00047670-exon-scaffold_133-1510915933:289578..290141Clytia hemisphaericaexon
TCONS_00047670-exon-scaffold_133-1491911889:296113..296659TCONS_00047670-exon-scaffold_133-1491911889:296113..296659Clytia hemisphaericaexon
TCONS_00047670-exon-scaffold_133-1491911889:293863..293907TCONS_00047670-exon-scaffold_133-1491911889:293863..293907Clytia hemisphaericaexon
TCONS_00047670-exon-scaffold_133-1491911889:293306..293589TCONS_00047670-exon-scaffold_133-1491911889:293306..293589Clytia hemisphaericaexon
TCONS_00047670-exon-scaffold_133-1491911889:292862..292966TCONS_00047670-exon-scaffold_133-1491911889:292862..292966Clytia hemisphaericaexon
TCONS_00047670-exon-scaffold_133-1491911889:292389..292467TCONS_00047670-exon-scaffold_133-1491911889:292389..292467Clytia hemisphaericaexon
TCONS_00047670-exon-scaffold_133-1491911889:292025..292082TCONS_00047670-exon-scaffold_133-1491911889:292025..292082Clytia hemisphaericaexon
TCONS_00047670-exon-scaffold_133-1491911889:291252..291407TCONS_00047670-exon-scaffold_133-1491911889:291252..291407Clytia hemisphaericaexon
TCONS_00047670-exon-scaffold_133-1491911889:290986..291079TCONS_00047670-exon-scaffold_133-1491911889:290986..291079Clytia hemisphaericaexon
TCONS_00047670-exon-scaffold_133-1491911889:289578..290141TCONS_00047670-exon-scaffold_133-1491911889:289578..290141Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_133supercontigscaffold_133:289578..296659 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.63419	1.54419	1.65314	1.68566	4.50979	3.11533	4.21391	3.74626	1.60502	0.794208	1.10068	1.46194	1.982	2.04503	1.03092	1.72695	0.690808	1.68287	0.133335	0.736053	2.00296	2.15788	0.286975	0.676678	1.59166	2.7915	2.97956	1.79316	1.93201	1.95144
Blast
[Close]
BLAST of TCONS_00047670 vs. Swiss-Prot (Human)
Match: YIF1B (Protein YIF1B OS=Homo sapiens GN=YIF1B PE=1 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 2.784e-77
Identity = 115/231 (49.78%), Postives = 164/231 (71.00%), Query Frame = 1 
Query:  829 YGQQFMPAGKEFVEKKLDHFLSVSKLKYYFAVDTTYVLKKLGLLVFPFAHKDWSLKYDNAEPVAPRFEINAPDLYIPSMAFVTYVLVCSVILGTQNRFTPEQLGMTASSAFVWLCIELIVIVMIMYLIGISGNIKYLDILSFCGYKYVGMILTSVCGLLFETTGYYASLLWCSVAISFFIARSLRLVINPEDHSDSVSRSTSGNKRRLYILLTVSLIQPVFMYFLTKHLIH 1521
            YG      GKE V+K +D F+ ++KLKYYFAVDT YV +KLGLL FP+ H+DW ++Y    PVAPRF++NAPDLYIP+MAF+TYVLV  + LGTQ+RF+P+ LG+ ASSA  WL +E++ I++ +YL+ ++ ++  +D+++F GYKYVGMI   + GLLF   GYY  L WC VAI  F+ R+LRL I  +  ++ V    + N+ R+Y+ + V+  QP+ MY+LT HL+ 
Sbjct:   84 YGSSLAAQGKELVDKNIDRFIPITKLKYYFAVDTMYVGRKLGLLFFPYLHQDWEVQYQQDTPVAPRFDVNAPDLYIPAMAFITYVLVAGLALGTQDRFSPDLLGLQASSALAWLTLEVLAILLSLYLVTVNTDLTTIDLVAFLGYKYVGMIGGVLMGLLFGKIGYYLVLGWCCVAIFVFMIRTLRLKILADAAAEGVPVRGARNQLRMYLTMAVAAAQPMLMYWLTFHLVR 314
The following BLAST results are available for this feature:
BLAST of TCONS_00047670 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
YIF1B2.784e-7749.78Protein YIF1B OS=Homo sapiens GN=YIF1B PE=1 SV=1[more]
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