TCONS_00047666 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047666
Unique NameTCONS_00047666
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2789

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047666 ID=TCONS_00047666|Name=TCONS_00047666|organism=Clytia hemisphaerica|type=transcript|length=2789bp
GAAACAAAATATCACTGCAGCTAGATTCACACTTCAACCAGCACAGCAAC
ACCAATCTACATAAAAATGCAACGAAAAAGGGTTTTTCATTGTATTGCTG
CAATGGATTTAAAAAGAGGTATTGGAAAAAACAATGATTTACCATGGCAT
CTACCAAATGAATATAAACATTTTGTGCGCACCTCAAAATCTGTTTTAAA
CCCTGAGAAACAAAATGCTGTGATTCTTGGCAAAAATACTTGGTTTTCAG
TACCAGAAAAATTTCGTCCATTGAAAGGCCGTTTGAATGTCGTGATTAGT
AGCACCTTGAATACTGGAGATTTACCAGAAAGTGTTAAGCTATGTAGATC
ATTGCCAGATGCTGTTGATTTGCTCAGCAGTGAACCATATGATaacaaaa
ttgaagaaatttttattattggtGGAGCAAGTTTGTATAAAGAAGGGATG
GAATCAGAATCATGCAAACGAATCTATATAACCAAAATTGATGGTGATTT
TGAATGCAACGTTTTTTATCCGGAATTTGACACTGAAGTTTACAAAGAAA
TCACTTTGGATAATGTTTCCCAGGAAATTCAAGAAGAGAAAGGTATCAAG
TATACTTTCCATGTATATGAGAAGCCTTGAAAAGAATTGTACCGATATCG
GTTGATATTGAGAACGACAAATCCTTCAATAATTTTAACTGCATCATTTC
TAGTTACCCTATTAACATGCATTTGCTGGTAATAATTTTAATGATGTCTT
AGATATAAAATGAATTTAGGTTTATTCACTTTTCTAGAATATCATTATTC
TAATTATGATAAATTCTTTAACTGTAAAGCATGTAGGATATAAAAAAAGA
TAGTTAAATATAGAGTAAGTAATATCATTAagctttttgaatattttttt
gttttttaaagttttccaATGGTTCTGTTGAACTTATTGCTTGTCAATAG
TCAGTCCGGAATTTATATTTtaacaacaaatcaaaatggtgtCATTTTTA
ATGgttcgttatttttttcaatttagcaactaaaactaaaaaaataagaa
atctatttgaaaagaacaaaaacaatgTCAACAACATACTTCCCATCAAT
GTTTATCATATtggctttgatattttttcaacaaaaattggtCATGTCTT
CAGATTGCACAAGTCGTGGTACCAACTGTACTTCATGTTTAAGCGACGGA
CATTGTGGATTCTGTGACTCCTGCGGTGATTACTGCCATCAGTCAAAAAC
ATTACATTCTTTTGAGAATTGTACGCATTGCGCTCAATGTGTACCTGGAA
CATTATCTGGACCAAAGAAAGGACATACTTGCAGACATGAGTGGTATTAT
TATGAGAAATGTCCTGAAGTGGTTAGTGTCAAGAAAACAGTTTATGTTGG
AATAGCTTTGTATTTGGTCAATTTACATTCTGTTGATATGAAGGGTGGCA
CATTTCATGCAGATTTCTATCTTTATTTTAAAGTTCCACCTGGTCAAACT
CTATACACGaaacagaaatgcaaaaatattggTTTGAATGGAGCCTGTTT
TGATCTTGTTAATGCAGCAGGAGCAGCGGAGGTTTCATTGCACGAAGGAA
AATACTTCAGAGTGAAAGGAAAATTCAATTTTGCTGCTGATCTTGCAAAC
TTCCCTTTTGATAATCAGACATTGAAGATTGAAGTTCAAGATATGGAGAT
GACAGCCAAAGAACTAAGATGGCGCCTTTTGGAGtcTACCGTTGATCAAG
ACCGTCCATTCAAATTCAAGAGTGGAATTTCACCGACATTGAATTACACA
GGGTGGGTCTTTGACCCTTATTCATGGACTCAAATTGTATATGAAAGGTA
CTCATTCTTTTTCATCCTTTCTTCaagggtacacgtttttttataagaaa
aaactatataagaaaataaggcttcgatggccaaaatgttaagaacaagt
taagaacatcttaaggctttatggactctaaaTCGCcggatttcttagga
aaatgggtaaaaatggtcaaaaaaggttaaaaaatggcgaaaataagaat
atgtttttaagaacatttttaggcttaaaactcgaaaagttaagaacatc
ccaaggctttaaaaatttgggatgttcttataaaaaatcgtgtAACCAAT
TTTATAGCAACTGGATCAAACAAcattgaaagaaatttgtcaacaAATTA
TTGACCGTTTTCTTATAATAAAGCtctattttaaaaagtttttttccatg
cttatttcaaatttcatgAATCTAAATCAATGTTACTGATTCCTAGGATT
GATTTTGAACATCTTAGACTGAACGTGATAATTATAGATTGTGCCGTCTT
ATTTTTATGTTGTCTCGAATCATTTCAAAAACCTTGTAAGAGtaaattga
aatctttttttaacgTATTTAACAGTTTCGTGTTATTATGAAATTATTCT
TGCAAAAAAGCCCTCTTTTAGCGAATTTTCATATCTATTCTTAGCAAAAA
GTGATTAATAGTCAAAATcccaaaatgaaattgtttaaCAAATTTTCCTG
GCTATGGCAATAACTCGAAAATAATTCTAGAAAACCTATAAAAAGTTATG
AAATAATAAATATCTAGAATTTCCCACAATGAATTATTTTTAGATATTGC
AGTTCAACCAATGTCATATTTAGTTTAGTTTCGTATCATACTGTCTTCTT
TTTTGCATTAAAAAATAACCGTTGTGTGTTCACCATCTAAACGcacttac
tcttaggtgccaaataaacggggggttcgaataaatggg
Run BLAST on NCBI

transcript from alignment at scaffold_133:233994..249161-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047666 ID=TCONS_00047666|Name=TCONS_00047666|organism=Clytia hemisphaerica|type=transcript|length=15168bp|location=Sequence derived from alignment at scaffold_133:233994..249161- (Clytia hemisphaerica)
GAAACAAAATATCACTGCAGCTAGATTCACACTTCAACCAGCACAGCAGT
AAGTATGATATCTGAAGAATGAAGGAAAGGTTATACTTGCCAATACTTTA
AATTTCAAGATTTTACAATCATCAAACTTTATATTATAACTTCGTCAGTA
AAACACAGTCAGGCACATCCTGGCAAATGAACGGGGTGACCCAGTGTAAA
TGAGATAGGACGTCTCAGGCTAAAAGCGTGAAATGAATAAAAATGAAATT
CAAACTGAAAATGGGAAAAAAGGAAGAAAACTGGGAACTTTATTTTTTCA
TTAAAAGTTTCTTCAATCTTCGAAGACAAAATTAATTGACCCATGGAAAA
TTTAAGTTCATCAGATGAAGAATATAATTTAAAAATGGTAATACATTAAA
AGAAGGGCAGGCAAAGGGTGTTGAAATTAGAAGAGGGATGACTAGAATAA
CTTACTTATTGTGGCGGCAATCGAAAAAATTTTCTATTCGTGTCATCCGC
TCCCATCATATTTTGCTCTGATTTTCCAGTGTGGAGACGCGGAAAAAAAA
TCCGGGAAAAGCAATTTGTTCTTTTATAAAGTATATATAGCTTTTTTCTC
AATCGCTCTGGCAGCCATCGAAAAATTGTTTTGTTCACTTCACCACCCGC
CCCTGACTTACTGGTGCGATTAGAAAAAACGGGAAATTTTTCGATCGCCC
GCTCGCATGCATGCATTTTTAACATACGTTGCGACGCGAACAAAGCAATT
TTTGATGGCCGCCTATACCTTTATGACCCTCCTGACAGAAGAAATGAGAG
TGAAATGACATGTCTCTCACCTGAACTGCATTTCTGGAAACAAGATTTAT
AGTTGTTTATGGATCGAACAAAGTCAAAGAAGGTCTTTGGAGGCTTTTTC
CTTTTTTAAACCCAGCATATGGATTAAAAACCAGCTTACGTCCAAGAGCT
TTGCTATTGTTCTGCTCAAAAAAGCACAGGAGGTCATCTTGGGTACTTTC
AGACTTTTTCAAATTCAAAATTGTCAAGTGGCCCAATAAAGTTTGGGCCG
TACCTTGGGTTATTGTAATGTGTAATTTGTTATTCAACAGACTGTTGCCT
TCTCCTTAAAGACTATTAGGGAATGGAAGCCTCTGAAAAGGAAATTTTTG
GAAGAAGGGGAAATTCCCTCTGGCAGTTAGTCACACTAGGAAATCAAGCT
TTCAGAAAAAACAACAATCAGTCATCTACAGGATGTAATTGCAACAACAA
GGATGAGAGTTACCTGAATCAACTTCAAGTTCCCAAGACAATTTTAATTA
AAACTTGAAAACTTAAAATGAGACTAAATGACCGATTGCAAACGTGCATC
AGCCAGAATATAAACCAACCAAATTTTGTCATTCAACTCCAGAGACAGCG
CTTCGATTTTTAAGGCCTTGTTTATACGCTAAAGTAAAAATAATTCCGCA
CATGTAAATGGGTCAGTGTTTGAGGTCCAGCAAAATTTCCTGGAAATACC
CTATCCGGTGGTGCGCGGATCTAGGTGGGTTCCATCTCCCCCGTAGATTT
TTTTCTTGGGAAGTTGATCTTCAAATTAGTTTTCAAGGCTTTGCTCAAAT
CTTTTCATCTATGGCTCAAATTTTAGGCGATTTCTCATAGTTTTTGAAAA
TTATTATTTTTTCATGAATCCCTTTAGAAGTTTTGCTGCGCATTTGTTTG
CTTGCGAGTCAAGTAAACAATATAGCGCTTTCGCAGCATTAATCTTTGAT
ATGCATTTTGGCAGGACGCTAGTGTGACTAACTGTCTGAAAATCTTCAAT
GAACTCGAGAAGAGGCTTTCTTGACCCCCTGCCCCTTTCAGAAAATCTGA
AAAATGAACAAAAACCCTTGGAAAATCTTACGCTGCAGGTTTACCCTTCA
GATATGTTTCATGTATAGGAGACATACAATGTGTAAAATTCCTGTCAAAG
AGTTACCTCCCCCCATCTTGGTGTTTTTGAGATTTAGAAACTTGATAGCC
TGAATACTGTAGTAAGTTTTAACGAGAGATCTTTAAAAATTTGAATTGAA
TTAGATTTGAATTATCAGTTTGAATGGAGAGCTTAATACAATCGTTGGAT
TTCTAAACCTTTTGAAGAAAATTAAAATTTTGGGTAACTCTTCAACAAGA
ATTTTATATACGATTAGCAGACCCTATATCAAAACATATCAGAGGGAATG
CTTGCAGTCTAGGAAAACCAAGCTCAGACCCCCTGGAACAATCCTGGCTG
GGCTTAGTTGGGCAGGGGGCACTGAATTTGATGGCCAACAAGNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNACACCAACTTTCTTAAAACATAGTCATGTGGCATATCAAATTA
TCAGAAATTCTATGCTGATTCCAAAAAACATTAGTAGTAGGGGTCAGAAA
TAAAGCTAAAGAAAGTTATGACCACATATTGGACCAGATTTTGAGTAAAT
TGCATAATTCGCAAGAAATTCGAATAGAATCTTGATTATGACTAACATTT
CATGTAGTTAGTAGTTAAACTTTGACAAAATTCTGGTTTATTGAATGTAA
CTGTTTTCATGATATGAAGACATTTTCAGGTTTATTTAAGTTTTCTTTAG
AGAGAAGGATTATGAAGGAATGTGAAGCTGAGGTACTTTGTATTGAACAA
GAGCAAAATATATTTTATCAAGCCAGAAATTGCAAAGTCAAAAATCAAGG
AATAAAAAGTTTTTCAATTGTAAAGAGCGTCACAAACTGCCACATGAGTG
GACAGAATGAATGTAAAGATAACCTTTGGATGTTCTTTACCAAATGCCAA
GAGAGCGTTGGAATATCTATTCACCACTAAGATGGTCAATACAGGAAAGA
ATGAGAATTTTGAAAAAGCTGTCGAAAAGGGTGTTGTATTGCAATGGATT
TTTTGCAATGTTTATCCAAAGAACTATCGAACATCGGAGCACGATATTAA
AACATTATTAAATAATTATGAATTATTGAAAAAAAAANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNAGGGTAAGGCTACAAGAAACAACCTGGGTGTAAAAATGTGGCAAAAT
GACCGGACATTTTACAATAACCAAAAACAAATGCCAGTAGAAGGGTTTCG
TACCAGTTTCACTGATAGACTCTCTTTTTTTAACTTTCCAATTCCCTGAG
GATGCTCTTAAGACTTGCCATTGAGATACAGGTAGCTGATCTGGTGCTTT
CAAAATATATTTTTAACCCATTTTGAACCCCCCCCCCTTGAACTCAACCT
CTTGCCATTCTGCCTCCTCATTCTGCATCCTGCAAATGTAAACTTTAAAG
GTGCCATAAATCATGGTCTATGGATTAAACTCAACTTGTATACCTAAACA
AAAATTGCAAAAAATTGAATTGGATATCACTGTCAGTTCGGAGAGAATTT
GCCCTAGCAGTTGACTATTCAATAATCAAAAAGAAATCTTACCAATAATG
TCAAACAATTCTTTAAGCTGTATTTCTCAAACTTAAGCCAGTAATTCTCT
GATTTCTTCGAAGTGCTTCTTTTTTTCAATGATTCATAACTATTTATATA
TTATTTTAATTATTTATAAAATTGTAATAATAATCTTTTGATATCGTGCT
CCACTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCCTTTGCAACAG
TTTTTTCAAAATTCTTATTCTTTCCTGTATTGACCATCTTAGTGGTGAAT
AGATATTCCAACGCTTTCTTGGCATTTGATAGAACATGCAAAGGTTATCT
TTCCAACATCTCAAAATTAACACAGGTATTACAATCTTTACATTTATCTG
TCCACGCATGTGGCAGTTTGTGATGCTCTTTGCAATTGAAGACTTTTTAT
TTCTCTGTGTTTGTTTTGATTTTTTACTTGGCAATTTCTGGCTTGATAAA
ATATCTTTTGCTCTTGTTTGAAGTACCTCAGCTTCACCATCCTTGTCTAC
ATTCATAATCCTTCTCTCTAAAAAAAACTTAAATAAACCTGAAAATGTCT
TCATATCATAAAAACAGTTACATTCAATTAACCAGAATTATGCCAAAGTT
TAACTATTAACTACATGATAGTTAGTCATAATCAAGATTCTATTCGAATT
TCTTGCGAATTGTGCAATTACTCAAAATCTGGTCCAAGATATGGTCATAA
CTTTTTTTAGCTTTATTTCTGACCCCTACTACTAATGTTTTTTGGAATCA
GCATAAAATTTCTGATAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNTGATATGCCACATGACTATGTTTTGAGAAAGTTGGTGTTAGG
CTATTATTGGTCCGGGGTTGCGCTGGGTACCCCGCAGAAATGGGGCCCGG
GGGGACCCTGAAAAGGGTCCCTGGTCAAAATTTTTGATTTTTTTCTTCTT
TTCATATAATTTGGCAGCTTTTGTACATATGCCACTAATTGTTTTTTTCT
AAGTCCCCTCCCTACAACAAGGAAGTGTAGCTGAAGTTAAAAAGGTTAGA
CTTCATCAGGTATGAATGTTTGGTAAATTTGGGACCTTGTCAGAAAGAAA
AATATTTCTCATTATCATCCTGATAAATTGAAAAAGTATCTAAAAGAAGA
GGAAAAATTGTTTTGCAATTCGAAGGTTAAGGTAAAATATTTTGCCAATT
TTAAATAAAGTATTGTATCGCAGGCAAAAAATTTTCAATTTCATGAGCTT
TAATTTTGAGTAATTAGTAGTCGCCTACCATTAAGATATTCAGCCCTCAT
ATGAAATGATGAGATTTCAGCTCCCCCAAGTACATATTTGAAACATATTT
GTAGCAGATGACTTTCCTCCACAACTTTTTGGTTAGTAGTCCAATTCGGG
TACCNTGGTTATTTAATTCTAGTCTGTAAATTATATGGGTAATAAGTAGT
CCAATTCGGGTACCCCTACCTTTTAGGAACACCCAAGTCCAATGTAGCGG
TACCTGGAACTCTTTAATGTTGACACTTTTTTTCAAGACCTTGAGCATGA
TTGAAATTATAATTAACTTTTAGAGAATTTAATGGGCAAAAAAAGTAATA
CTGAAAAAACAAATACTACACATCAAGTGTAAAGACAGTCCTTAATTCAA
GATTCTGCTTATGTTGAGGTGGATTATGAATAAAAGATTTCTGACAGAGG
GAAGACTTATCATAGCCATTAAGATCTTCCACCATATCCTCTATTCTATG
CCAGATCTTAAGGCTGGGTAGGTTGATGACTCGTAAATGTACTTTTTATG
CATGGTTTCTATAACCACCTGTGGCCCTAAGTTAGACATTTTCAATTGTA
TCAGAGTGTTTGATCACCCATGGAGACTAGACTGCTTGTGAGTACTCAAA
GTGAGGTCTCACAAATGCTATGAATAGTGTACCAAACATCTCATGAGAAA
GGAAGTCAAAGCTTCTATTAATCGATCCAACGATCGAGTCAGCATTCTTG
ATCTTGGTGCAGATGGATCTACATAATGACTCCAAAAATAGCACATGATT
TACCTGATAGTAGACCCGTGTCCACTAATCTAATTTTTATATTACTGGGC
TTTTCAAAAAGAATGTGCCTAAAAGTACATATACAATCATTAGATTGCAA
AAACCAATAATATCAAATAGCCTAAGTGTTGAAAAATTGTTTTTGTTGTT
GTATGTAATGTTTTTTTCTCGCTATTTTATGGAGTCCAAATGGTATCGTG
AATTGCAAAGGGTCTATTAAGAGGGCTCTTTGTGTTTTTATATTTCTTTG
CATAGAGGAACAAGAACTATCAACAACTATCAGCTTCAAGCCAATCAATA
CTCAGAATTATTATTATGCCTTTATAGTACTTAATTTGACCAATTTAATT
CAACTTTCATAATTATTAGACACCAATCTACATAAAAATGCAACGAAAAA
GGGTTTTTCATTGTATTGCTGCAATGGATTTAAAAAGAGGTATTGGAAAA
AACAATGATTTACCATGGCATCTACCAAATGAATATAAACATTTTGTGCG
CACCTCAAAATCTGTTTTAAACCCTGAGAAACAAAATGCTGTGATTCTTG
GCAAAAATACTTGGTTTTCAGTACCAGAAAAATTTCGTCCATTGAAAGGC
CGTTTGAATGTCGTGATTAGTAGCACCTTGAATACTGGAGATTTACCAGA
AAGTGTTAAGCTATGTAGATCATTGCCAGATGCTGTTGATTTGCTCAGCA
GTGAACCATATGATAACAAAATTGAAGAAATTTTTATTATTGGTGGAGCA
AGTTTGTATAAAGAAGGGATGGAATCAGAATCATGCAAACGAATCTATAT
AACCAAAATTGATGGTGATTTTGAATGCAACGTTTTTTATCCGGAATTTG
ACACTGAAGTTTACAAAGAAATCACTTTGGATAATGTTTCCCAGGAAATT
CAAGAAGAGAAAGGTATCAAGTATACTTTCCATGTATATGAGAAGCCTTG
AAAAGAATTGTACCGATATCGGTTGATATTGAGAACGACAAATCCTTCAA
TAATTTTAACTGCATCATTTCTAGTTACCCTATTAACATGCATTTGCTGG
TAATAATTTTAATGATGTCTTAGATATAAAATGAATTTAGGTTTATTCAC
TTTTCTAGAATATCATTATTCTAATTATGATAAATTCTTTAACTGTAAAG
CATGTAGGATATAAAAAAAGATAGTTAAATATAGAGTAAGTAATATCATT
AAGCTTTTTGAATATTTTTTTGTTTTTTAAAGTTTTCCAATGGTTCTGTT
GAACTTATTGCTTGTCAATAGTCAGTCCGGAATTTATATTTTAACAACAA
ATCAAAATGGTGTCATTTTTAATGGTTCGTTATTTTTTTCAATTTAGCAA
CTAAAACTAAAAAAATAAGAAATCTATTTGAAAAGAACAAAAACAATGTC
AACAACATACTTCCCATCAATGTTTATCATATTGGCTTTGATATTTTTTC
AACAAAAATTGGTCATGTCTTCAGATTGCACAAGTCGTGGTACCAACTGT
ACTTCATGTTTAAGCGACGGACATTGTGGATTCTGTGACTCCTGCGGTGA
TTACTGCCATCAGTCAAAAACATTACATTCTTTTGAGAATTGTACGCATT
GCGCTCAATGTGTACCTGGAACATTATCTGGACCAAAGAAAGGACATACT
TGCAGACATGAGTGGTATACAAATTAACCCGTTTTATGCATTATATTTTC
AAAGGCACCACCCTTGGGTCAGTTCTAAAATCTCAGACATATTTTTTAGA
ACTTGGTGCATACAGTATCAACCTAGTTTTAGTTAAGTGTTATATTATGA
AATTGGGAAATTTAATAGAAAGATACTCTATTTTGGTCTTCAAAGGAAAA
TTTTTCCAAAAACTATAGTTGTCTACAGTTGTACATAAAATTAGTCATAT
CTGTACAAAATTGATACTTTTATACCATATTTATACCTTTTAATTTTTAC
AGGTATTATTATGAGAAATGTCCTGAAGTGGTTAGTGTCAAGAAAACAGT
TTATGTTGGAATAGCTTTGTATTTGGTCAATTTACATTCTGTTGATATGA
AGGGTGGCACATTTCATGCAGATTTCTATCTTTATTTTAAAGGTATATAA
ATGTTTTTTTCATAAGAATATCCAGAATTTTGAAATCTTTTTGAGTTTTA
AATGTCTGAAAATCTTCTCATTTTCACCATTTTGTGAATATTTTTGTGCA
ATTTCCTAAGAAATTGGGTGTTTCAGAGTCTGCGAAGCCTTGAATATTCT
AAAGTCGAGACAATCCATAACCTGTCTTAAATAAAAATATTTTTTGTTCA
TTGTTTAAATGCTTTTGTATGTGATAGCTTTTAACTTTTAGTTCCACCTG
GTCAAACTCTATACACGAAACAGAAATGCAAAAATATTGGTTTGAATGGA
GCCTGTTTTGATCTTGTTAATGCAGCAGGAGCAGCGGAGGTAAAGTGAAA
ATGATTAAGTCATAATTTTGTATTACTTGTTAGCTTAGTCTTTGGTACTT
TAATTACACTCTGACAAAATAGGGATTTATCTCTAGTCAAGTTTCCTCTT
TTGTCCCTGATTATATTCTCAACTTCAGTTGAGTTAGAATTTGAGAATGT
GTGTCCGTGTGTCTGTCTGTGTGTATGTCCCAAAACTTTGGGGCAGCCTG
GAGACTTCAAAAATTGTTCGATTTGGCTGAAATTTTTCACACTTGTTCCT
TGGGTGAATATCTGGGGGTGTTTTTTTCATTTTTCAAAAATTTTGATTTT
TGGAGCCTGGGGACGAGCTTTTCGCCAAAACGAGGCTAAAACTTTGGGGC
AGCCTGGAGACTTCAAAAATTGTTCGATCTGGCTGAAATTTGGCACACTT
GTTCATTGGGTAAATATCTGGGGGTCTACAATTGGGCCTATGAATAATTT
GAAGCCACTGAAGTTGAGGCCAGTGCGTTGCGCACGTTCGACTATCTGGC
AGAGTCACAAAATCAGTTTATACTAAAATCATTAACAAATTATCTGATAG
GACTTAATTTTGGGGAATTTTGACAAAAAATTGAATAACTAGAAGAGTAA
CTGATTATGGGAATCGATTTTTTATTTGATGCTATTAAAGAGGGAAATCA
TTTTCTCAAAAATAATTCACAATTTATAATTTCAATCGAGAAATCGTACT
CGAAGAAAGGAGCTGTTCAACCATCATGTTTTATGTACTATATTTTATTT
TATATTACCATGGCTACAGGTTTCATTGCACGAAGGAAAATACTTCAGAG
TGAAAGGAAAATTCAATTTTGCTGCTGATCTTGCAAACTTCCCGTAAGTA
ATTCAATTCCAAATTTTTCTTTTGTTTCATTCATGTAATAAACACATCAT
TATCTTCATATTCGTGAATTTTGGAAGCAAGCATAGTTTCATCATAAACA
TGACCACATATTAGCGATACCTGTATGGTGTGACGCATAGAATGCACCCC
CTTGAGCTTAGGGGGGGGTCAAAGAATAATGGGGGCTAGCTTGCTAGGGG
GGCTGAGTGTTGTGTAATAGAACTGGGGGCAGAGCTGGTAGGTTGAAGAT
ATTTTAAATTATGTTAAAAATCTATGTTGTGGGGAAATTTTTTTGGGGAA
TGTGGGGGCTATGTTTCTAGAATTTAGCCGGGGGCTATTTTCCTTAGCCC
CCCCTAAAAATGCTGTGAGCTGGACCCCTCTGCACACTATGCTTGACGAT
TTTTGGCTCATAAATGATGGGAAATATCCTATAAAGCATTATTATTATTA
ATCTATTTTCAGTTGGTACATAAAGTAAAGGACCTAACGTCCTAAATAGT
TACAGCCTGTAAACCGTTACTAACAAAATCCAACATTTATAAAAAATATT
CAAAAATATCTACCACAATTTACATATTTGGCAGGTACAAAAATCGTTTG
GCAACATTTTTAATTTGCCCCTAAATGTATTAAACGTTGCAAAGCTTTTC
ACATCCTTAGAGAGACGATCCCAAATGAGGGAGCCAACAAAACTTAAAGG
TTGTAAGCCAAACTTAACTCTGTTAGCCGGAGGTAACATAAGTTGCTCTC
TCCGTCTAAGTTTATAAGGCATGTTTAGTTTTTTAAGAGTTTTATAAATT
TCCTCATATCTTGGATGTTTTCCATCAATACTCAAGGTTACGTTTTTCTA
TGCTTCTACTTAAATGTTACAATCTAAATTTGTTTGGCGAATCCCGTTAT
TAAAAGAATTCCTTACATATGGAACAAAATTTGAGATTTTGAAAGTCCAT
TATCATAAGACATAATTATATCATAATTATATGTGGATGGCAACTAACGC
TTTGTGTTTTATTTTCTTCTTTCTTCTTCTTCTTTCTTTCTCATCCCTTC
CTTTTTTCCTTTTTTTTCCAAATTGTGCAACAGAACAAAATGCATCCTAT
CTTATCTTTTTGACCTGCCAAAGTAAAAAATTNAAGATATTTTAAATTAT
GTTAAAAATCTATGTTGTGGGGAAATTTTTTTGGGGAATGTGGGGGCTAT
GTTTCTAGAATTTAGCCGGGGGCTATTTTCCTTAACCCCCTAAAAATGCT
GTGAGCTGGACCCCTCTGCACACTATGCCTGATGATTTTTGGCTCATAAA
TGATGGGAAATATCCTATAAAGCATTACTATTATTAATCTATTTTCAGTT
GGTACATAAAGTAAAGGACCTAACGTCCTAAATAGTTACAGCCTGTAAAC
CGTTACTAACAAAATCCAACATTTATAAAAAATATTCAAAAATATCTACC
ACAATTTACATATTTGGCAGGTACAAAAATCGTTTGGCAACATTTTTAAT
TTGCCCCTAAATGTATTAAACGTTGCAAAGCTTTTCACATCCTTAGAGAG
ACGATCCCAAATGAGGGAGCCAACAAAACTTAAAGGTTGTAAGCCAAACT
TAACTCTGTTAGCCGGAGGTAACATAAGTTGCTCTCTCCGTCTAAGTTTA
TAAGGCATGTTTAGTTTTTTAAGAGTTTTATAAATTTCCTCATATCTTGG
ATGTTTTCCATCAATACTCAAGGTTACGTTTTTCTATGCTTCTACTTAAA
TGTTACAATCTAAATTTGTTTGGCGAATCCCGTTATGAAAAGAATTTCTT
ACATGGAACAAAATTTGAGATTTTGAAAGTCCATTATCATAAGACCCCTG
GGTAAAAATTGAAATTTAATTATATGTGGATGGCAAGTAACGCTTTGTGT
TTTATTTTCTTCTTTCTTCTTCTTCTTTCTTTCTCATTTCTTCCTTTTTT
CCTTTTTTTTTCCAAATTGTGCAACAGAACAAAATGTATCCTATCTTATC
TTTTTGACCTGCCACCAAAGTAAAAAATCATCTTTGCCATATAAAATAGA
AATCAACGTGCGAAAATTCTCTACAATGATTTCACAATTTTTGAAATGTA
AAATCTCAAGAAATAATATTTTTCGACAAGTTTTATTTCAAAATGTAATC
TTATCTCTTCGCCACAGGAAACCTCGTGGTTGATGCATTTAAAGTGGGAG
CGTCATTTTTTATTGGGTGTTGGGTTTTACCACCCTTACCTCACTTACAC
GTTTTTTTATAAGAACATTCAGATGTTCTTAAAATTTTGCTCACAGAGCA
TTTTTTTGGTAGGTACCATAAAAGAAAATCCTTTAAGTTGTCAGAAAAAA
CCCTAGAAACGTGAAAGCAATGTGAAATCGATCCTGCTTCTGCTTTATTT
TATTTAAATAGAAAAAAATCATAGAAGTCAAGCAAGTCAACGAGGCTGTT
GAAATTGACCTCAATAAAATTTCGAAAATTTATAAACGGGGGGTCCTGAT
AATAATGTGTGGTCCGAATTTGTTTTTCGAGAATTAATAATCGGGAGGAC
GTTTATTCAGGACCTTAGAGTAATTTCTTTTTAGGCTTAGGTATAACTAT
TTTCCTCACGTAAGGGTTCAAAGGGGGCTTATATGTAATATTATAAAAAT
CGAAAAGATCTTCTTCTGGAGCTGTAACGAAACTTTTTGTTTTCCAAGTT
TTCGTTGTTTGAAACCATTGCTACGTGCGTCTTGTGATATCAATGAGCCA
GGGAAAATAAGCTCTAGAGCAGCCAAAATTCAAGCTTTAAAATTTCGTCA
TTTACTTATTTCCATCGTTACGACGACGTTGAGACGGATAAAGAGGCGCC
CTTTATGGATCTGGGTTTATGGGCTCGAAATATAGCAAGAACGGAGGGTT
CAGACCCTTAAAGGGACATAAAAATACTGACGAAATTTGTAAACAAACCG
TATGCAGCGGGATACAAAATCAAAACAAATGTCACATGTCAAAATAAAAA
ATCAAAACAAATATGGCCGATTTTGATTGTTTCAATTGTTTTACAAGTTT
GTTTTGGACACAAGATTTTAATTGTTGTCTTTAATGGCATGTGGTTCGCG
CAGTGTTTATATTTTGCTACTTTTATGTCCCTTTATGATCAAAATTTCTT
TTCTTTTTAACCAAAGTTTTGATAATCAGACATTGAAGATTGAAGTTCAA
GATATGGAGATGACAGCCAAAGAACTAAGATGGCGCCTTTTGGAGGTAAT
CATAACATCGCTCCCTATCGGATCAATTTTGGTTAAAAATGAGCGATACA
AGTGCTTAAACTCTTTTTTGTTTGAAGATCTGCAATGTAGCTCAAAGAGA
GAAAGTCGTTCTGGACAATTTTCAACGAAATTTGTTCTAGATTTTCGGAA
GAAGATTTCCTCTTTTTTCCGTGGTAATTAGTTCGTTGGATTTGGGAGTA
ATTATTCCATTTAAACTATGATAACTTTCCCTACTTATGAACTATAATCA
ATTTACACTATTAATTTTTGCTAAAAAGTTTGAAAATTTTCGTAGGATAT
TTTTGCTCAGCTTTGTGGGCTCTACCACGTAGTGCAGGTCTTTTTTGTTA
TAAAGATCACCCACCATCACATCCACTGGAAGTTTAATGTTGCGGGAATA
ACTTCATTGAATTTCATAAAAATAAGTATTTTAGCTATTATTCATGCAAC
AAGAAACCAAATTGAGATTTATTCTTTCAACAATTTTTCCCAATTTTTTT
TTCTTTTTTATAGTCTACCGTTGATCAAGACCGTCCATTCAAATTCAAGA
GTGGAATTTCACCGACATTGAATTACACAGGGTGGGTCTTTGACCCTTAT
TCATGGACTCAAATTGTATATGAAAGGTACTCATTCTTTTTCATCCTTTC
TTCAAGGGTACACGTTTTTTTATAAGAAAAAACTATATAAGAAAATAAGG
CTTCGATGGCCAAAATGTTAAGAACAAGTTAAGAACATCTTAAGGCTTTA
TGGACTCTAAATCGCCGGATTTCTTAGGAAAATGGGTAAAAATGGTCAAA
AAAGGTTAAAAAATGGCGAAAATAAGAATATGTTTTTAAGAACATTTTTA
GGCTTAAAACTCGAAAAGTTAAGAACATCCCAAGGCTTTAAAAATTTGGG
ATGTTCTTATAAAAAATCGTGTAACCAATTTTATAGCAACTGGATCAAAC
AACATTGAAAGAAATTTGTCAACAAATTATTGACCGTTTTCTTATAATAA
AGCTCTATTTTAAAAAGTTTTTTTCCATGCTTATTTCAAATTTCATGAAT
CTAAATCAATGTTACTGATTCCTAGGATTGATTTTGAACATCTTAGACTG
AACGTGATAATTATAGATTGTGCCGTCTTATTTTTATGTTGTCTCGAATC
ATTTCAAAAACCTTGTAAGAGTAAATTGAAATCTTTTTTTAACGTATTTA
ACAGTTTCGTGTTATTATGAAATTATTCTTGCAAAAAAGCCCTCTTTTAG
CGAATTTTCATATCTATTCTTAGCAAAAAGTGATTAATAGTCAAAATCCC
AAAATGAAATTGTTTAACAAATTTTCCTGGCTATGGCAATAACTCGAAAA
TAATTCTAGAAAACCTATAAAAAGTTATGAAATAATAAATATCTAGAATT
TCCCACAATGAATTATTTTTAGATATTGCAGTTCAACCAATGTCATATTT
AGTTTAGTTTCGTATCATACTGTCTTCTTTTTTGCATTAAAAAATAACCG
TTGTGTGTTCACCATCTAAACGCACTTACTCTTAGGTGCCAAATAAACGG
GGGGTTCGAATAAATGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030353XLOC_030353Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047666-exon-scaffold_133-1575043694:249114..249161TCONS_00047666-exon-scaffold_133-1575043694:249114..249161Clytia hemisphaericaexon
TCONS_00047666-exon-scaffold_133-1575043694:240448..241742TCONS_00047666-exon-scaffold_133-1575043694:240448..241742Clytia hemisphaericaexon
TCONS_00047666-exon-scaffold_133-1575043694:240020..240159TCONS_00047666-exon-scaffold_133-1575043694:240020..240159Clytia hemisphaericaexon
TCONS_00047666-exon-scaffold_133-1575043694:239673..239770TCONS_00047666-exon-scaffold_133-1575043694:239673..239770Clytia hemisphaericaexon
TCONS_00047666-exon-scaffold_133-1575043694:238819..238892TCONS_00047666-exon-scaffold_133-1575043694:238819..238892Clytia hemisphaericaexon
TCONS_00047666-exon-scaffold_133-1575043694:235567..235645TCONS_00047666-exon-scaffold_133-1575043694:235567..235645Clytia hemisphaericaexon
TCONS_00047666-exon-scaffold_133-1575043694:233994..235048TCONS_00047666-exon-scaffold_133-1575043694:233994..235048Clytia hemisphaericaexon
TCONS_00047666-exon-scaffold_133-1510915933:249114..249161TCONS_00047666-exon-scaffold_133-1510915933:249114..249161Clytia hemisphaericaexon
TCONS_00047666-exon-scaffold_133-1510915933:240448..241742TCONS_00047666-exon-scaffold_133-1510915933:240448..241742Clytia hemisphaericaexon
TCONS_00047666-exon-scaffold_133-1510915933:240020..240159TCONS_00047666-exon-scaffold_133-1510915933:240020..240159Clytia hemisphaericaexon
TCONS_00047666-exon-scaffold_133-1510915933:239673..239770TCONS_00047666-exon-scaffold_133-1510915933:239673..239770Clytia hemisphaericaexon
TCONS_00047666-exon-scaffold_133-1510915933:238819..238892TCONS_00047666-exon-scaffold_133-1510915933:238819..238892Clytia hemisphaericaexon
TCONS_00047666-exon-scaffold_133-1510915933:235567..235645TCONS_00047666-exon-scaffold_133-1510915933:235567..235645Clytia hemisphaericaexon
TCONS_00047666-exon-scaffold_133-1510915933:233994..235048TCONS_00047666-exon-scaffold_133-1510915933:233994..235048Clytia hemisphaericaexon
TCONS_00047666-exon-scaffold_133-1491911889:249114..249161TCONS_00047666-exon-scaffold_133-1491911889:249114..249161Clytia hemisphaericaexon
TCONS_00047666-exon-scaffold_133-1491911889:240448..241742TCONS_00047666-exon-scaffold_133-1491911889:240448..241742Clytia hemisphaericaexon
TCONS_00047666-exon-scaffold_133-1491911889:240020..240159TCONS_00047666-exon-scaffold_133-1491911889:240020..240159Clytia hemisphaericaexon
TCONS_00047666-exon-scaffold_133-1491911889:239673..239770TCONS_00047666-exon-scaffold_133-1491911889:239673..239770Clytia hemisphaericaexon
TCONS_00047666-exon-scaffold_133-1491911889:238819..238892TCONS_00047666-exon-scaffold_133-1491911889:238819..238892Clytia hemisphaericaexon
TCONS_00047666-exon-scaffold_133-1491911889:235567..235645TCONS_00047666-exon-scaffold_133-1491911889:235567..235645Clytia hemisphaericaexon
TCONS_00047666-exon-scaffold_133-1491911889:233994..235048TCONS_00047666-exon-scaffold_133-1491911889:233994..235048Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_133supercontigscaffold_133:233994..249161 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.31186	0	0	0	2.19257	0.0122468	1.85675	1.98634	0	0.449769	9.10713e-05	0.576276	1.51827e-07	1.13991	0.598666	0	0	0	0	1.37894e-08	0	0	0	0	1.52817	1.93713	0	0	0	0
Blast
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BLAST of TCONS_00047666 vs. Swiss-Prot (Human)
Match: DYR (Dihydrofolate reductase OS=Homo sapiens GN=DHFR PE=1 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 3.988e-44
Identity = 85/183 (46.45%), Postives = 117/183 (63.93%), Query Frame = 1 
Query:   85 FHCIAAMDLKRGIGKNNDLPWH-LPNEYKHFVRTSKSVLNPEKQNAVILGKNTWFSVPEKFRPLKGRLNVVISSTLNTGDLPESVK-LCRSLPDAVDLLSSEPYDNKIEEIFIIGGASLYKEGMESESCKRIYITKIDGDFECNVFYPEFDTEVYKEIT-LDNVSQEIQEEKGIKYTFHVYEK 624
             +CI A+    GIGKN DLPW  L NE+++F R + +     KQN VI+GK TWFS+PEK RPLKGR+N+V+S  L   + P+    L RSL DA+ L       NK++ ++I+GG+S+YKE M      ++++T+I  DFE + F+PE D E YK +     V  ++QEEKGIKY F VYEK
Sbjct:    5 LNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRPLKGRINLVLSRELK--EPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKFEVYEK 185
The following BLAST results are available for this feature:
BLAST of TCONS_00047666 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DYR3.988e-4446.45Dihydrofolate reductase OS=Homo sapiens GN=DHFR PE... [more]
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