TCONS_00047665 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047665
Unique NameTCONS_00047665
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2789

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047665 ID=TCONS_00047665|Name=TCONS_00047665|organism=Clytia hemisphaerica|type=transcript|length=2789bp
TAAGATCTTCCACCATATCCTCTATTCTATGCCAGATCTTAAGGCTGGAC
ACCAATCTACATAAAAATGCAACGAAAAAGGGTTTTTCATTGTATTGCTG
CAATGGATTTAAAAAGAGGTATTGGAAAAAACAATGATTTACCATGGCAT
CTACCAAATGAATATAAACATTTTGTGCGCACCTCAAAATCTGTTTTAAA
CCCTGAGAAACAAAATGCTGTGATTCTTGGCAAAAATACTTGGTTTTCAG
TACCAGAAAAATTTCGTCCATTGAAAGGCCGTTTGAATGTCGTGATTAGT
AGCACCTTGAATACTGGAGATTTACCAGAAAGTGTTAAGCTATGTAGATC
ATTGCCAGATGCTGTTGATTTGCTCAGCAGTGAACCATATGATaacaaaa
ttgaagaaatttttattattggtGGAGCAAGTTTGTATAAAGAAGGGATG
GAATCAGAATCATGCAAACGAATCTATATAACCAAAATTGATGGTGATTT
TGAATGCAACGTTTTTTATCCGGAATTTGACACTGAAGTTTACAAAGAAA
TCACTTTGGATAATGTTTCCCAGGAAATTCAAGAAGAGAAAGGTATCAAG
TATACTTTCCATGTATATGAGAAGCCTTGAAAAGAATTGTACCGATATCG
GTTGATATTGAGAACGACAAATCCTTCAATAATTTTAACTGCATCATTTC
TAGTTACCCTATTAACATGCATTTGCTGGTAATAATTTTAATGATGTCTT
AGATATAAAATGAATTTAGGTTTATTCACTTTTCTAGAATATCATTATTC
TAATTATGATAAATTCTTTAACTGTAAAGCATGTAGGATATAAAAAAAGA
TAGTTAAATATAGAGTAAGTAATATCATTAagctttttgaatattttttt
gttttttaaagttttccaATGGTTCTGTTGAACTTATTGCTTGTCAATAG
TCAGTCCGGAATTTATATTTtaacaacaaatcaaaatggtgtCATTTTTA
ATGgttcgttatttttttcaatttagcaactaaaactaaaaaaataagaa
atctatttgaaaagaacaaaaacaatgTCAACAACATACTTCCCATCAAT
GTTTATCATATtggctttgatattttttcaacaaaaattggtCATGTCTT
CAGATTGCACAAGTCGTGGTACCAACTGTACTTCATGTTTAAGCGACGGA
CATTGTGGATTCTGTGACTCCTGCGGTGATTACTGCCATCAGTCAAAAAC
ATTACATTCTTTTGAGAATTGTACGCATTGCGCTCAATGTGTACCTGGAA
CATTATCTGGACCAAAGAAAGGACATACTTGCAGACATGAGTGGTATTAT
TATGAGAAATGTCCTGAAGTGGTTAGTGTCAAGAAAACAGTTTATGTTGG
AATAGCTTTGTATTTGGTCAATTTACATTCTGTTGATATGAAGGGTGGCA
CATTTCATGCAGATTTCTATCTTTATTTTAAAGTTCCACCTGGTCAAACT
CTATACACGaaacagaaatgcaaaaatattggTTTGAATGGAGCCTGTTT
TGATCTTGTTAATGCAGCAGGAGCAGCGGAGGTTTCATTGCACGAAGGAA
AATACTTCAGAGTGAAAGGAAAATTCAATTTTGCTGCTGATCTTGCAAAC
TTCCCTTTTGATAATCAGACATTGAAGATTGAAGTTCAAGATATGGAGAT
GACAGCCAAAGAACTAAGATGGCGCCTTTTGGAGtcTACCGTTGATCAAG
ACCGTCCATTCAAATTCAAGAGTGGAATTTCACCGACATTGAATTACACA
GGGTGGGTCTTTGACCCTTATTCATGGACTCAAATTGTATATGAAAGGTA
CTCATTCTTTTTCATCCTTTCTTCaagggtacacgtttttttataagaaa
aaactatataagaaaataaggcttcgatggccaaaatgttaagaacaagt
taagaacatcttaaggctttatggactctaaaTCGCcggatttcttagga
aaatgggtaaaaatggtcaaaaaaggttaaaaaatggcgaaaataagaat
atgtttttaagaacatttttaggcttaaaactcgaaaagttaagaacatc
ccaaggctttaaaaatttgggatgttcttataaaaaatcgtgtAACCAAT
TTTATAGCAACTGGATCAAACAAcattgaaagaaatttgtcaacaAATTA
TTGACCGTTTTCTTATAATAAAGCtctattttaaaaagtttttttccatg
cttatttcaaatttcatgAATCTAAATCAATGTTACTGATTCCTAGGATT
GATTTTGAACATCTTAGACTGAACGTGATAATTATAGATTGTGCCGTCTT
ATTTTTATGTTGTCTCGAATCATTTCAAAAACCTTGTAAGAGtaaattga
aatctttttttaacgTATTTAACAGTTTCGTGTTATTATGAAATTATTCT
TGCAAAAAAGCCCTCTTTTAGCGAATTTTCATATCTATTCTTAGCAAAAA
GTGATTAATAGTCAAAATcccaaaatgaaattgtttaaCAAATTTTCCTG
GCTATGGCAATAACTCGAAAATAATTCTAGAAAACCTATAAAAAGTTATG
AAATAATAAATATCTAGAATTTCCCACAATGAATTATTTTTAGATATTGC
AGTTCAACCAATGTCATATTTAGTTTAGTTTCGTATCATACTGTCTTCTT
TTTTGCATTAAAAAATAACCGTTGTGTGTTCACCATCTAAACGcacttac
tcttaggtgccaaataaacggggggttcgaataaatggg
Run BLAST on NCBI

protein sequence of TCONS_00047665-protein

>TCONS_00047665-protein ID=TCONS_00047665-protein|Name=TCONS_00047665-protein|organism=Clytia hemisphaerica|type=polypeptide|length=273bp
MSTTYFPSMFIILALIFFQQKLVMSSDCTSRGTNCTSCLSDGHCGFCDSC
GDYCHQSKTLHSFENCTHCAQCVPGTLSGPKKGHTCRHEWYYYEKCPEVV
SVKKTVYVGIALYLVNLHSVDMKGGTFHADFYLYFKVPPGQTLYTKQKCK
NIGLNGACFDLVNAAGAAEVSLHEGKYFRVKGKFNFAADLANFPFDNQTL
KIEVQDMEMTAKELRWRLLESTVDQDRPFKFKSGISPTLNYTGWVFDPYS
WTQIVYERYSFFFILSSRVHVFL
Run BLAST on NCBI

transcript from alignment at scaffold_133:233994..242442-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047665 ID=TCONS_00047665|Name=TCONS_00047665|organism=Clytia hemisphaerica|type=transcript|length=8449bp|location=Sequence derived from alignment at scaffold_133:233994..242442- (Clytia hemisphaerica)
TAAGATCTTCCACCATATCCTCTATTCTATGCCAGATCTTAAGGCTGGGT
AGGTTGATGACTCGTAAATGTACTTTTTATGCATGGTTTCTATAACCACC
TGTGGCCCTAAGTTAGACATTTTCAATTGTATCAGAGTGTTTGATCACCC
ATGGAGACTAGACTGCTTGTGAGTACTCAAAGTGAGGTCTCACAAATGCT
ATGAATAGTGTACCAAACATCTCATGAGAAAGGAAGTCAAAGCTTCTATT
AATCGATCCAACGATCGAGTCAGCATTCTTGATCTTGGTGCAGATGGATC
TACATAATGACTCCAAAAATAGCACATGATTTACCTGATAGTAGACCCGT
GTCCACTAATCTAATTTTTATATTACTGGGCTTTTCAAAAAGAATGTGCC
TAAAAGTACATATACAATCATTAGATTGCAAAAACCAATAATATCAAATA
GCCTAAGTGTTGAAAAATTGTTTTTGTTGTTGTATGTAATGTTTTTTTCT
CGCTATTTTATGGAGTCCAAATGGTATCGTGAATTGCAAAGGGTCTATTA
AGAGGGCTCTTTGTGTTTTTATATTTCTTTGCATAGAGGAACAAGAACTA
TCAACAACTATCAGCTTCAAGCCAATCAATACTCAGAATTATTATTATGC
CTTTATAGTACTTAATTTGACCAATTTAATTCAACTTTCATAATTATTAG
ACACCAATCTACATAAAAATGCAACGAAAAAGGGTTTTTCATTGTATTGC
TGCAATGGATTTAAAAAGAGGTATTGGAAAAAACAATGATTTACCATGGC
ATCTACCAAATGAATATAAACATTTTGTGCGCACCTCAAAATCTGTTTTA
AACCCTGAGAAACAAAATGCTGTGATTCTTGGCAAAAATACTTGGTTTTC
AGTACCAGAAAAATTTCGTCCATTGAAAGGCCGTTTGAATGTCGTGATTA
GTAGCACCTTGAATACTGGAGATTTACCAGAAAGTGTTAAGCTATGTAGA
TCATTGCCAGATGCTGTTGATTTGCTCAGCAGTGAACCATATGATAACAA
AATTGAAGAAATTTTTATTATTGGTGGAGCAAGTTTGTATAAAGAAGGGA
TGGAATCAGAATCATGCAAACGAATCTATATAACCAAAATTGATGGTGAT
TTTGAATGCAACGTTTTTTATCCGGAATTTGACACTGAAGTTTACAAAGA
AATCACTTTGGATAATGTTTCCCAGGAAATTCAAGAAGAGAAAGGTATCA
AGTATACTTTCCATGTATATGAGAAGCCTTGAAAAGAATTGTACCGATAT
CGGTTGATATTGAGAACGACAAATCCTTCAATAATTTTAACTGCATCATT
TCTAGTTACCCTATTAACATGCATTTGCTGGTAATAATTTTAATGATGTC
TTAGATATAAAATGAATTTAGGTTTATTCACTTTTCTAGAATATCATTAT
TCTAATTATGATAAATTCTTTAACTGTAAAGCATGTAGGATATAAAAAAA
GATAGTTAAATATAGAGTAAGTAATATCATTAAGCTTTTTGAATATTTTT
TTGTTTTTTAAAGTTTTCCAATGGTTCTGTTGAACTTATTGCTTGTCAAT
AGTCAGTCCGGAATTTATATTTTAACAACAAATCAAAATGGTGTCATTTT
TAATGGTTCGTTATTTTTTTCAATTTAGCAACTAAAACTAAAAAAATAAG
AAATCTATTTGAAAAGAACAAAAACAATGTCAACAACATACTTCCCATCA
ATGTTTATCATATTGGCTTTGATATTTTTTCAACAAAAATTGGTCATGTC
TTCAGATTGCACAAGTCGTGGTACCAACTGTACTTCATGTTTAAGCGACG
GACATTGTGGATTCTGTGACTCCTGCGGTGATTACTGCCATCAGTCAAAA
ACATTACATTCTTTTGAGAATTGTACGCATTGCGCTCAATGTGTACCTGG
AACATTATCTGGACCAAAGAAAGGACATACTTGCAGACATGAGTGGTATA
CAAATTAACCCGTTTTATGCATTATATTTTCAAAGGCACCACCCTTGGGT
CAGTTCTAAAATCTCAGACATATTTTTTAGAACTTGGTGCATACAGTATC
AACCTAGTTTTAGTTAAGTGTTATATTATGAAATTGGGAAATTTAATAGA
AAGATACTCTATTTTGGTCTTCAAAGGAAAATTTTTCCAAAAACTATAGT
TGTCTACAGTTGTACATAAAATTAGTCATATCTGTACAAAATTGATACTT
TTATACCATATTTATACCTTTTAATTTTTACAGGTATTATTATGAGAAAT
GTCCTGAAGTGGTTAGTGTCAAGAAAACAGTTTATGTTGGAATAGCTTTG
TATTTGGTCAATTTACATTCTGTTGATATGAAGGGTGGCACATTTCATGC
AGATTTCTATCTTTATTTTAAAGGTATATAAATGTTTTTTTCATAAGAAT
ATCCAGAATTTTGAAATCTTTTTGAGTTTTAAATGTCTGAAAATCTTCTC
ATTTTCACCATTTTGTGAATATTTTTGTGCAATTTCCTAAGAAATTGGGT
GTTTCAGAGTCTGCGAAGCCTTGAATATTCTAAAGTCGAGACAATCCATA
ACCTGTCTTAAATAAAAATATTTTTTGTTCATTGTTTAAATGCTTTTGTA
TGTGATAGCTTTTAACTTTTAGTTCCACCTGGTCAAACTCTATACACGAA
ACAGAAATGCAAAAATATTGGTTTGAATGGAGCCTGTTTTGATCTTGTTA
ATGCAGCAGGAGCAGCGGAGGTAAAGTGAAAATGATTAAGTCATAATTTT
GTATTACTTGTTAGCTTAGTCTTTGGTACTTTAATTACACTCTGACAAAA
TAGGGATTTATCTCTAGTCAAGTTTCCTCTTTTGTCCCTGATTATATTCT
CAACTTCAGTTGAGTTAGAATTTGAGAATGTGTGTCCGTGTGTCTGTCTG
TGTGTATGTCCCAAAACTTTGGGGCAGCCTGGAGACTTCAAAAATTGTTC
GATTTGGCTGAAATTTTTCACACTTGTTCCTTGGGTGAATATCTGGGGGT
GTTTTTTTCATTTTTCAAAAATTTTGATTTTTGGAGCCTGGGGACGAGCT
TTTCGCCAAAACGAGGCTAAAACTTTGGGGCAGCCTGGAGACTTCAAAAA
TTGTTCGATCTGGCTGAAATTTGGCACACTTGTTCATTGGGTAAATATCT
GGGGGTCTACAATTGGGCCTATGAATAATTTGAAGCCACTGAAGTTGAGG
CCAGTGCGTTGCGCACGTTCGACTATCTGGCAGAGTCACAAAATCAGTTT
ATACTAAAATCATTAACAAATTATCTGATAGGACTTAATTTTGGGGAATT
TTGACAAAAAATTGAATAACTAGAAGAGTAACTGATTATGGGAATCGATT
TTTTATTTGATGCTATTAAAGAGGGAAATCATTTTCTCAAAAATAATTCA
CAATTTATAATTTCAATCGAGAAATCGTACTCGAAGAAAGGAGCTGTTCA
ACCATCATGTTTTATGTACTATATTTTATTTTATATTACCATGGCTACAG
GTTTCATTGCACGAAGGAAAATACTTCAGAGTGAAAGGAAAATTCAATTT
TGCTGCTGATCTTGCAAACTTCCCGTAAGTAATTCAATTCCAAATTTTTC
TTTTGTTTCATTCATGTAATAAACACATCATTATCTTCATATTCGTGAAT
TTTGGAAGCAAGCATAGTTTCATCATAAACATGACCACATATTAGCGATA
CCTGTATGGTGTGACGCATAGAATGCACCCCCTTGAGCTTAGGGGGGGGT
CAAAGAATAATGGGGGCTAGCTTGCTAGGGGGGCTGAGTGTTGTGTAATA
GAACTGGGGGCAGAGCTGGTAGGTTGAAGATATTTTAAATTATGTTAAAA
ATCTATGTTGTGGGGAAATTTTTTTGGGGAATGTGGGGGCTATGTTTCTA
GAATTTAGCCGGGGGCTATTTTCCTTAGCCCCCCCTAAAAATGCTGTGAG
CTGGACCCCTCTGCACACTATGCTTGACGATTTTTGGCTCATAAATGATG
GGAAATATCCTATAAAGCATTATTATTATTAATCTATTTTCAGTTGGTAC
ATAAAGTAAAGGACCTAACGTCCTAAATAGTTACAGCCTGTAAACCGTTA
CTAACAAAATCCAACATTTATAAAAAATATTCAAAAATATCTACCACAAT
TTACATATTTGGCAGGTACAAAAATCGTTTGGCAACATTTTTAATTTGCC
CCTAAATGTATTAAACGTTGCAAAGCTTTTCACATCCTTAGAGAGACGAT
CCCAAATGAGGGAGCCAACAAAACTTAAAGGTTGTAAGCCAAACTTAACT
CTGTTAGCCGGAGGTAACATAAGTTGCTCTCTCCGTCTAAGTTTATAAGG
CATGTTTAGTTTTTTAAGAGTTTTATAAATTTCCTCATATCTTGGATGTT
TTCCATCAATACTCAAGGTTACGTTTTTCTATGCTTCTACTTAAATGTTA
CAATCTAAATTTGTTTGGCGAATCCCGTTATTAAAAGAATTCCTTACATA
TGGAACAAAATTTGAGATTTTGAAAGTCCATTATCATAAGACATAATTAT
ATCATAATTATATGTGGATGGCAACTAACGCTTTGTGTTTTATTTTCTTC
TTTCTTCTTCTTCTTTCTTTCTCATCCCTTCCTTTTTTCCTTTTTTTTCC
AAATTGTGCAACAGAACAAAATGCATCCTATCTTATCTTTTTGACCTGCC
AAAGTAAAAAATTNAAGATATTTTAAATTATGTTAAAAATCTATGTTGTG
GGGAAATTTTTTTGGGGAATGTGGGGGCTATGTTTCTAGAATTTAGCCGG
GGGCTATTTTCCTTAACCCCCTAAAAATGCTGTGAGCTGGACCCCTCTGC
ACACTATGCCTGATGATTTTTGGCTCATAAATGATGGGAAATATCCTATA
AAGCATTACTATTATTAATCTATTTTCAGTTGGTACATAAAGTAAAGGAC
CTAACGTCCTAAATAGTTACAGCCTGTAAACCGTTACTAACAAAATCCAA
CATTTATAAAAAATATTCAAAAATATCTACCACAATTTACATATTTGGCA
GGTACAAAAATCGTTTGGCAACATTTTTAATTTGCCCCTAAATGTATTAA
ACGTTGCAAAGCTTTTCACATCCTTAGAGAGACGATCCCAAATGAGGGAG
CCAACAAAACTTAAAGGTTGTAAGCCAAACTTAACTCTGTTAGCCGGAGG
TAACATAAGTTGCTCTCTCCGTCTAAGTTTATAAGGCATGTTTAGTTTTT
TAAGAGTTTTATAAATTTCCTCATATCTTGGATGTTTTCCATCAATACTC
AAGGTTACGTTTTTCTATGCTTCTACTTAAATGTTACAATCTAAATTTGT
TTGGCGAATCCCGTTATGAAAAGAATTTCTTACATGGAACAAAATTTGAG
ATTTTGAAAGTCCATTATCATAAGACCCCTGGGTAAAAATTGAAATTTAA
TTATATGTGGATGGCAAGTAACGCTTTGTGTTTTATTTTCTTCTTTCTTC
TTCTTCTTTCTTTCTCATTTCTTCCTTTTTTCCTTTTTTTTTCCAAATTG
TGCAACAGAACAAAATGTATCCTATCTTATCTTTTTGACCTGCCACCAAA
GTAAAAAATCATCTTTGCCATATAAAATAGAAATCAACGTGCGAAAATTC
TCTACAATGATTTCACAATTTTTGAAATGTAAAATCTCAAGAAATAATAT
TTTTCGACAAGTTTTATTTCAAAATGTAATCTTATCTCTTCGCCACAGGA
AACCTCGTGGTTGATGCATTTAAAGTGGGAGCGTCATTTTTTATTGGGTG
TTGGGTTTTACCACCCTTACCTCACTTACACGTTTTTTTATAAGAACATT
CAGATGTTCTTAAAATTTTGCTCACAGAGCATTTTTTTGGTAGGTACCAT
AAAAGAAAATCCTTTAAGTTGTCAGAAAAAACCCTAGAAACGTGAAAGCA
ATGTGAAATCGATCCTGCTTCTGCTTTATTTTATTTAAATAGAAAAAAAT
CATAGAAGTCAAGCAAGTCAACGAGGCTGTTGAAATTGACCTCAATAAAA
TTTCGAAAATTTATAAACGGGGGGTCCTGATAATAATGTGTGGTCCGAAT
TTGTTTTTCGAGAATTAATAATCGGGAGGACGTTTATTCAGGACCTTAGA
GTAATTTCTTTTTAGGCTTAGGTATAACTATTTTCCTCACGTAAGGGTTC
AAAGGGGGCTTATATGTAATATTATAAAAATCGAAAAGATCTTCTTCTGG
AGCTGTAACGAAACTTTTTGTTTTCCAAGTTTTCGTTGTTTGAAACCATT
GCTACGTGCGTCTTGTGATATCAATGAGCCAGGGAAAATAAGCTCTAGAG
CAGCCAAAATTCAAGCTTTAAAATTTCGTCATTTACTTATTTCCATCGTT
ACGACGACGTTGAGACGGATAAAGAGGCGCCCTTTATGGATCTGGGTTTA
TGGGCTCGAAATATAGCAAGAACGGAGGGTTCAGACCCTTAAAGGGACAT
AAAAATACTGACGAAATTTGTAAACAAACCGTATGCAGCGGGATACAAAA
TCAAAACAAATGTCACATGTCAAAATAAAAAATCAAAACAAATATGGCCG
ATTTTGATTGTTTCAATTGTTTTACAAGTTTGTTTTGGACACAAGATTTT
AATTGTTGTCTTTAATGGCATGTGGTTCGCGCAGTGTTTATATTTTGCTA
CTTTTATGTCCCTTTATGATCAAAATTTCTTTTCTTTTTAACCAAAGTTT
TGATAATCAGACATTGAAGATTGAAGTTCAAGATATGGAGATGACAGCCA
AAGAACTAAGATGGCGCCTTTTGGAGGTAATCATAACATCGCTCCCTATC
GGATCAATTTTGGTTAAAAATGAGCGATACAAGTGCTTAAACTCTTTTTT
GTTTGAAGATCTGCAATGTAGCTCAAAGAGAGAAAGTCGTTCTGGACAAT
TTTCAACGAAATTTGTTCTAGATTTTCGGAAGAAGATTTCCTCTTTTTTC
CGTGGTAATTAGTTCGTTGGATTTGGGAGTAATTATTCCATTTAAACTAT
GATAACTTTCCCTACTTATGAACTATAATCAATTTACACTATTAATTTTT
GCTAAAAAGTTTGAAAATTTTCGTAGGATATTTTTGCTCAGCTTTGTGGG
CTCTACCACGTAGTGCAGGTCTTTTTTGTTATAAAGATCACCCACCATCA
CATCCACTGGAAGTTTAATGTTGCGGGAATAACTTCATTGAATTTCATAA
AAATAAGTATTTTAGCTATTATTCATGCAACAAGAAACCAAATTGAGATT
TATTCTTTCAACAATTTTTCCCAATTTTTTTTTCTTTTTTATAGTCTACC
GTTGATCAAGACCGTCCATTCAAATTCAAGAGTGGAATTTCACCGACATT
GAATTACACAGGGTGGGTCTTTGACCCTTATTCATGGACTCAAATTGTAT
ATGAAAGGTACTCATTCTTTTTCATCCTTTCTTCAAGGGTACACGTTTTT
TTATAAGAAAAAACTATATAAGAAAATAAGGCTTCGATGGCCAAAATGTT
AAGAACAAGTTAAGAACATCTTAAGGCTTTATGGACTCTAAATCGCCGGA
TTTCTTAGGAAAATGGGTAAAAATGGTCAAAAAAGGTTAAAAAATGGCGA
AAATAAGAATATGTTTTTAAGAACATTTTTAGGCTTAAAACTCGAAAAGT
TAAGAACATCCCAAGGCTTTAAAAATTTGGGATGTTCTTATAAAAAATCG
TGTAACCAATTTTATAGCAACTGGATCAAACAACATTGAAAGAAATTTGT
CAACAAATTATTGACCGTTTTCTTATAATAAAGCTCTATTTTAAAAAGTT
TTTTTCCATGCTTATTTCAAATTTCATGAATCTAAATCAATGTTACTGAT
TCCTAGGATTGATTTTGAACATCTTAGACTGAACGTGATAATTATAGATT
GTGCCGTCTTATTTTTATGTTGTCTCGAATCATTTCAAAAACCTTGTAAG
AGTAAATTGAAATCTTTTTTTAACGTATTTAACAGTTTCGTGTTATTATG
AAATTATTCTTGCAAAAAAGCCCTCTTTTAGCGAATTTTCATATCTATTC
TTAGCAAAAAGTGATTAATAGTCAAAATCCCAAAATGAAATTGTTTAACA
AATTTTCCTGGCTATGGCAATAACTCGAAAATAATTCTAGAAAACCTATA
AAAAGTTATGAAATAATAAATATCTAGAATTTCCCACAATGAATTATTTT
TAGATATTGCAGTTCAACCAATGTCATATTTAGTTTAGTTTCGTATCATA
CTGTCTTCTTTTTTGCATTAAAAAATAACCGTTGTGTGTTCACCATCTAA
ACGCACTTACTCTTAGGTGCCAAATAAACGGGGGGTTCGAATAAATGGG

Coding sequence (CDS) from alignment at scaffold_133:233994..242442-

>TCONS_00047665 ID=TCONS_00047665|Name=TCONS_00047665|organism=Clytia hemisphaerica|type=CDS|length=4932bp|location=Sequence derived from alignment at scaffold_133:233994..242442- (Clytia hemisphaerica)
TCTACCGTTGATCAAGACCGTCCATTCAAATTCAAGAGTGGAATTTCACC
GACATTGAATTACACAGGGTGGGTCTTTGACCCTTATTCATGGACTCAAA
TTGTATATGAAAGGTACTCATTCTTTTTCATCCTTTCTTCAAGGGTACAC
GTTTTTTTATAATTTTGATAATCAGACATTGAAGATTGAAGTTCAAGATA
TGGAGATGACAGCCAAAGAACTAAGATGGCGCCTTTTGGAGGTTTCATTG
CACGAAGGAAAATACTTCAGAGTGAAAGGAAAATTCAATTTTGCTGCTGA
TCTTGCAAACTTCCCTTCCACCTGGTCAAACTCTATACACGAAACAGAAA
TGCAAAAATATTGGTTTGAATGGAGCCTGTTTTGATCTTGTTAATGCAGC
AGGAGCAGCGGAGGTATTATTATGAGAAATGTCCTGAAGTGGTTAGTGTC
AAGAAAACAGTTTATGTTGGAATAGCTTTGTATTTGGTCAATTTACATTC
TGTTGATATGAAGGGTGGCACATTTCATGCAGATTTCTATCTTTATTTTA
AAGATGTCAACAACATACTTCCCATCAATGTTTATCATATTGGCTTTGAT
ATTTTTTCAACAAAAATTGGTCATGTCTTCAGATTGCACAAGTCGTGGTA
CCAACTGTACTTCATGTTTAAGCGACGGACATTGTGGATTCTGTGACTCC
TGCGGTGATTACTGCCATCAGTCAAAAACATTACATTCTTTTGAGAATTG
TACGCATTGCGCTCAATGTGTACCTGGAACATTATCTGGACCAAAGAAAG
GACATACTTGCAGACATGAGTGTCTACCGTTGATCAAGACCGTCCATTCA
AATTCAAGAGTGGAATTTCACCGACATTGAATTACACAGGGTGGGTCTTT
GACCCTTATTCATGGACTCAAATTGTATATGAAAGGTACTCATTCTTTTT
CATCCTTTCTTCAAGGGTACACGTTTTTTTATAATTTTGATAATCAGACA
TTGAAGATTGAAGTTCAAGATATGGAGATGACAGCCAAAGAACTAAGATG
GCGCCTTTTGGAGGTTTCATTGCACGAAGGAAAATACTTCAGAGTGAAAG
GAAAATTCAATTTTGCTGCTGATCTTGCAAACTTCCCTTCCACCTGGTCA
AACTCTATACACGAAACAGAAATGCAAAAATATTGGTTTGAATGGAGCCT
GTTTTGATCTTGTTAATGCAGCAGGAGCAGCGGAGGTATTATTATGAGAA
ATGTCCTGAAGTGGTTAGTGTCAAGAAAACAGTTTATGTTGGAATAGCTT
TGTATTTGGTCAATTTACATTCTGTTGATATGAAGGGTGGCACATTTCAT
GCAGATTTCTATCTTTATTTTAAAGATGTCAACAACATACTTCCCATCAA
TGTTTATCATATTGGCTTTGATATTTTTTCAACAAAAATTGGTCATGTCT
TCAGATTGCACAAGTCGTGGTACCAACTGTACTTCATGTTTAAGCGACGG
ACATTGTGGATTCTGTGACTCCTGCGGTGATTACTGCCATCAGTCAAAAA
CATTACATTCTTTTGAGAATTGTACGCATTGCGCTCAATGTGTACCTGGA
ACATTATCTGGACCAAAGAAAGGACATACTTGCAGACATGAGTGTCTACC
GTTGATCAAGACCGTCCATTCAAATTCAAGAGTGGAATTTCACCGACATT
GAATTACACAGGGTGGGTCTTTGACCCTTATTCATGGACTCAAATTGTAT
ATGAAAGGTACTCATTCTTTTTCATCCTTTCTTCAAGGGTACACGTTTTT
TTATAATTTTGATAATCAGACATTGAAGATTGAAGTTCAAGATATGGAGA
TGACAGCCAAAGAACTAAGATGGCGCCTTTTGGAGGTTTCATTGCACGAA
GGAAAATACTTCAGAGTGAAAGGAAAATTCAATTTTGCTGCTGATCTTGC
AAACTTCCCTTCCACCTGGTCAAACTCTATACACGAAACAGAAATGCAAA
AATATTGGTTTGAATGGAGCCTGTTTTGATCTTGTTAATGCAGCAGGAGC
AGCGGAGGTATTATTATGAGAAATGTCCTGAAGTGGTTAGTGTCAAGAAA
ACAGTTTATGTTGGAATAGCTTTGTATTTGGTCAATTTACATTCTGTTGA
TATGAAGGGTGGCACATTTCATGCAGATTTCTATCTTTATTTTAAAGATG
TCAACAACATACTTCCCATCAATGTTTATCATATTGGCTTTGATATTTTT
TCAACAAAAATTGGTCATGTCTTCAGATTGCACAAGTCGTGGTACCAACT
GTACTTCATGTTTAAGCGACGGACATTGTGGATTCTGTGACTCCTGCGGT
GATTACTGCCATCAGTCAAAAACATTACATTCTTTTGAGAATTGTACGCA
TTGCGCTCAATGTGTACCTGGAACATTATCTGGACCAAAGAAAGGACATA
CTTGCAGACATGAGTGTCTACCGTTGATCAAGACCGTCCATTCAAATTCA
AGAGTGGAATTTCACCGACATTGAATTACACAGGGTGGGTCTTTGACCCT
TATTCATGGACTCAAATTGTATATGAAAGGTACTCATTCTTTTTCATCCT
TTCTTCAAGGGTACACGTTTTTTTATAATTTTGATAATCAGACATTGAAG
ATTGAAGTTCAAGATATGGAGATGACAGCCAAAGAACTAAGATGGCGCCT
TTTGGAGGTTTCATTGCACGAAGGAAAATACTTCAGAGTGAAAGGAAAAT
TCAATTTTGCTGCTGATCTTGCAAACTTCCCTTCCACCTGGTCAAACTCT
ATACACGAAACAGAAATGCAAAAATATTGGTTTGAATGGAGCCTGTTTTG
ATCTTGTTAATGCAGCAGGAGCAGCGGAGGTATTATTATGAGAAATGTCC
TGAAGTGGTTAGTGTCAAGAAAACAGTTTATGTTGGAATAGCTTTGTATT
TGGTCAATTTACATTCTGTTGATATGAAGGGTGGCACATTTCATGCAGAT
TTCTATCTTTATTTTAAAGATGTCAACAACATACTTCCCATCAATGTTTA
TCATATTGGCTTTGATATTTTTTCAACAAAAATTGGTCATGTCTTCAGAT
TGCACAAGTCGTGGTACCAACTGTACTTCATGTTTAAGCGACGGACATTG
TGGATTCTGTGACTCCTGCGGTGATTACTGCCATCAGTCAAAAACATTAC
ATTCTTTTGAGAATTGTACGCATTGCGCTCAATGTGTACCTGGAACATTA
TCTGGACCAAAGAAAGGACATACTTGCAGACATGAGTGTCTACCGTTGAT
CAAGACCGTCCATTCAAATTCAAGAGTGGAATTTCACCGACATTGAATTA
CACAGGGTGGGTCTTTGACCCTTATTCATGGACTCAAATTGTATATGAAA
GGTACTCATTCTTTTTCATCCTTTCTTCAAGGGTACACGTTTTTTTATAA
TTTTGATAATCAGACATTGAAGATTGAAGTTCAAGATATGGAGATGACAG
CCAAAGAACTAAGATGGCGCCTTTTGGAGGTTTCATTGCACGAAGGAAAA
TACTTCAGAGTGAAAGGAAAATTCAATTTTGCTGCTGATCTTGCAAACTT
CCCTTCCACCTGGTCAAACTCTATACACGAAACAGAAATGCAAAAATATT
GGTTTGAATGGAGCCTGTTTTGATCTTGTTAATGCAGCAGGAGCAGCGGA
GGTATTATTATGAGAAATGTCCTGAAGTGGTTAGTGTCAAGAAAACAGTT
TATGTTGGAATAGCTTTGTATTTGGTCAATTTACATTCTGTTGATATGAA
GGGTGGCACATTTCATGCAGATTTCTATCTTTATTTTAAAGATGTCAACA
ACATACTTCCCATCAATGTTTATCATATTGGCTTTGATATTTTTTCAACA
AAAATTGGTCATGTCTTCAGATTGCACAAGTCGTGGTACCAACTGTACTT
CATGTTTAAGCGACGGACATTGTGGATTCTGTGACTCCTGCGGTGATTAC
TGCCATCAGTCAAAAACATTACATTCTTTTGAGAATTGTACGCATTGCGC
TCAATGTGTACCTGGAACATTATCTGGACCAAAGAAAGGACATACTTGCA
GACATGAGTGTCTACCGTTGATCAAGACCGTCCATTCAAATTCAAGAGTG
GAATTTCACCGACATTGAATTACACAGGGTGGGTCTTTGACCCTTATTCA
TGGACTCAAATTGTATATGAAAGGTACTCATTCTTTTTCATCCTTTCTTC
AAGGGTACACGTTTTTTTATAATTTTGATAATCAGACATTGAAGATTGAA
GTTCAAGATATGGAGATGACAGCCAAAGAACTAAGATGGCGCCTTTTGGA
GGTTTCATTGCACGAAGGAAAATACTTCAGAGTGAAAGGAAAATTCAATT
TTGCTGCTGATCTTGCAAACTTCCCTTCCACCTGGTCAAACTCTATACAC
GAAACAGAAATGCAAAAATATTGGTTTGAATGGAGCCTGTTTTGATCTTG
TTAATGCAGCAGGAGCAGCGGAGGTATTATTATGAGAAATGTCCTGAAGT
GGTTAGTGTCAAGAAAACAGTTTATGTTGGAATAGCTTTGTATTTGGTCA
ATTTACATTCTGTTGATATGAAGGGTGGCACATTTCATGCAGATTTCTAT
CTTTATTTTAAAGATGTCAACAACATACTTCCCATCAATGTTTATCATAT
TGGCTTTGATATTTTTTCAACAAAAATTGGTCATGTCTTCAGATTGCACA
AGTCGTGGTACCAACTGTACTTCATGTTTAAGCGACGGACATTGTGGATT
CTGTGACTCCTGCGGTGATTACTGCCATCAGTCAAAAACATTACATTCTT
TTGAGAATTGTACGCATTGCGCTCAATGTGTACCTGGAACATTATCTGGA
CCAAAGAAAGGACATACTTGCAGACATGAGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030353XLOC_030353Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047665-proteinTCONS_00047665-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047665-exon-scaffold_133-1575043694:242395..242442TCONS_00047665-exon-scaffold_133-1575043694:242395..242442Clytia hemisphaericaexon
TCONS_00047665-exon-scaffold_133-1575043694:240448..241742TCONS_00047665-exon-scaffold_133-1575043694:240448..241742Clytia hemisphaericaexon
TCONS_00047665-exon-scaffold_133-1575043694:240020..240159TCONS_00047665-exon-scaffold_133-1575043694:240020..240159Clytia hemisphaericaexon
TCONS_00047665-exon-scaffold_133-1575043694:239673..239770TCONS_00047665-exon-scaffold_133-1575043694:239673..239770Clytia hemisphaericaexon
TCONS_00047665-exon-scaffold_133-1575043694:238819..238892TCONS_00047665-exon-scaffold_133-1575043694:238819..238892Clytia hemisphaericaexon
TCONS_00047665-exon-scaffold_133-1575043694:235567..235645TCONS_00047665-exon-scaffold_133-1575043694:235567..235645Clytia hemisphaericaexon
TCONS_00047665-exon-scaffold_133-1575043694:233994..235048TCONS_00047665-exon-scaffold_133-1575043694:233994..235048Clytia hemisphaericaexon
TCONS_00047665-exon-scaffold_133-1510915933:242395..242442TCONS_00047665-exon-scaffold_133-1510915933:242395..242442Clytia hemisphaericaexon
TCONS_00047665-exon-scaffold_133-1510915933:240448..241742TCONS_00047665-exon-scaffold_133-1510915933:240448..241742Clytia hemisphaericaexon
TCONS_00047665-exon-scaffold_133-1510915933:240020..240159TCONS_00047665-exon-scaffold_133-1510915933:240020..240159Clytia hemisphaericaexon
TCONS_00047665-exon-scaffold_133-1510915933:239673..239770TCONS_00047665-exon-scaffold_133-1510915933:239673..239770Clytia hemisphaericaexon
TCONS_00047665-exon-scaffold_133-1510915933:238819..238892TCONS_00047665-exon-scaffold_133-1510915933:238819..238892Clytia hemisphaericaexon
TCONS_00047665-exon-scaffold_133-1510915933:235567..235645TCONS_00047665-exon-scaffold_133-1510915933:235567..235645Clytia hemisphaericaexon
TCONS_00047665-exon-scaffold_133-1510915933:233994..235048TCONS_00047665-exon-scaffold_133-1510915933:233994..235048Clytia hemisphaericaexon
TCONS_00047665-exon-scaffold_133-1491911889:242395..242442TCONS_00047665-exon-scaffold_133-1491911889:242395..242442Clytia hemisphaericaexon
TCONS_00047665-exon-scaffold_133-1491911889:240448..241742TCONS_00047665-exon-scaffold_133-1491911889:240448..241742Clytia hemisphaericaexon
TCONS_00047665-exon-scaffold_133-1491911889:240020..240159TCONS_00047665-exon-scaffold_133-1491911889:240020..240159Clytia hemisphaericaexon
TCONS_00047665-exon-scaffold_133-1491911889:239673..239770TCONS_00047665-exon-scaffold_133-1491911889:239673..239770Clytia hemisphaericaexon
TCONS_00047665-exon-scaffold_133-1491911889:238819..238892TCONS_00047665-exon-scaffold_133-1491911889:238819..238892Clytia hemisphaericaexon
TCONS_00047665-exon-scaffold_133-1491911889:235567..235645TCONS_00047665-exon-scaffold_133-1491911889:235567..235645Clytia hemisphaericaexon
TCONS_00047665-exon-scaffold_133-1491911889:233994..235048TCONS_00047665-exon-scaffold_133-1491911889:233994..235048Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_133supercontigscaffold_133:233994..242442 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
26.82	26.4602	13.031	9.42713	2.19257	3.49046	1.85675	1.98634	3.68557	2.24885	3.32958	2.59324	1.62148	0.75994	2.09533	3.0982	4.76941	4.23234	0.745869	1.15273	4.5536	4.43459	14.238	12.3419	1.52817	1.93713	3.17691	2.4363	4.68175	4.92956
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006202Neur_chan_lig-bd
Vocabulary: Biological Process
TermDefinition
GO:0006811ion transport
Vocabulary: Molecular Function
TermDefinition
GO:0005230extracellular ligand-gated ion channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005230 extracellular ligand-gated ion channel activity
Blast
[Close]
BLAST of TCONS_00047665 vs. Swiss-Prot (Human)
Match: DYR (Dihydrofolate reductase OS=Homo sapiens GN=DHFR PE=1 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 4.148e-44
Identity = 85/183 (46.45%), Postives = 117/183 (63.93%), Query Frame = 1 
Query:   85 FHCIAAMDLKRGIGKNNDLPWH-LPNEYKHFVRTSKSVLNPEKQNAVILGKNTWFSVPEKFRPLKGRLNVVISSTLNTGDLPESVK-LCRSLPDAVDLLSSEPYDNKIEEIFIIGGASLYKEGMESESCKRIYITKIDGDFECNVFYPEFDTEVYKEIT-LDNVSQEIQEEKGIKYTFHVYEK 624
             +CI A+    GIGKN DLPW  L NE+++F R + +     KQN VI+GK TWFS+PEK RPLKGR+N+V+S  L   + P+    L RSL DA+ L       NK++ ++I+GG+S+YKE M      ++++T+I  DFE + F+PE D E YK +     V  ++QEEKGIKY F VYEK
Sbjct:    5 LNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRPLKGRINLVLSRELK--EPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKFEVYEK 185
The following BLAST results are available for this feature:
BLAST of TCONS_00047665 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DYR4.148e-4446.45Dihydrofolate reductase OS=Homo sapiens GN=DHFR PE... [more]
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