TCONS_00047663 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047663
Unique NameTCONS_00047663
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length835

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047663 ID=TCONS_00047663|Name=TCONS_00047663|organism=Clytia hemisphaerica|type=transcript|length=835bp
ctttggattttagaacccccggataaaaaattttgccgtgccgcgaacaa
gaagtttgaaaaaactcacccgcgagtactcattttcaaattttgaagga
aaataaagacatgatgtgctgattttttctgtaaaagaaagctgaataaa
ttctctacactttggaaaaaatacttatgtCAAAAGAGGTTTCCTTCTTT
GAGGTatgtaagcttgaatattttttttcgaaaatctatgttttgttact
gccgcacTCGTAAGGCCCGACCTCCCTACCACAAggaaaatctttataaa
aacaaaaactttgacaaaataaaaaataatttcttagtAAAAAATACCAt
cagttggtctaatgtcaacatcccttgTTTAATACCCCTTTTGTCAGACA
CAATACACCATTTCAACTACAGTTATAATTAGCTAGCTTAGCAGCAAAAC
ATTACATAATGACTCCATaaattttcaccactaatcaGACGTTACTTATC
AATAAAATCGCAGATAAAATcgattatcgattaaaatcgatagctaatcg
ataatTAATTGATTGAATATACCAATTAAAAACAATAAGGGGTCACCCAC
ATATCGATGTTTCCTGCAACTAACTTCATTGTGACACGAGGGGTGGGGGG
GTCAGAGCCtatgacgctaagaaatttcaacagaatatcgattttcaaac
ttgtaACATTTTGTATTCCATCCTTCGCTACACCTTAATTCAAACGCATA
AAATATAACAGAGATGATATCCAATACCCTTCCGTTACGTTTGTAGGAAT
ATGTTATTATCTCCCTAATCATAAAAACAGAGATA
Run BLAST on NCBI

transcript from alignment at scaffold_133:143890..144724-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047663 ID=TCONS_00047663|Name=TCONS_00047663|organism=Clytia hemisphaerica|type=transcript|length=835bp|location=Sequence derived from alignment at scaffold_133:143890..144724- (Clytia hemisphaerica)
CTTTGGATTTTAGAACCCCCGGATAAAAAATTTTGCCGTGCCGCGAACAA
GAAGTTTGAAAAAACTCACCCGCGAGTACTCATTTTCAAATTTTGAAGGA
AAATAAAGACATGATGTGCTGATTTTTTCTGTAAAAGAAAGCTGAATAAA
TTCTCTACACTTTGGAAAAAATACTTATGTCAAAAGAGGTTTCCTTCTTT
GAGGTATGTAAGCTTGAATATTTTTTTTCGAAAATCTATGTTTTGTTACT
GCCGCACTCGTAAGGCCCGACCTCCCTACCACAAGGAAAATCTTTATAAA
AACAAAAACTTTGACAAAATAAAAAATAATTTCTTAGTAAAAAATACCAT
CAGTTGGTCTAATGTCAACATCCCTTGTTTAATACCCCTTTTGTCAGACA
CAATACACCATTTCAACTACAGTTATAATTAGCTAGCTTAGCAGCAAAAC
ATTACATAATGACTCCATAAATTTTCACCACTAATCAGACGTTACTTATC
AATAAAATCGCAGATAAAATCGATTATCGATTAAAATCGATAGCTAATCG
ATAATTAATTGATTGAATATACCAATTAAAAACAATAAGGGGTCACCCAC
ATATCGATGTTTCCTGCAACTAACTTCATTGTGACACGAGGGGTGGGGGG
GTCAGAGCCTATGACGCTAAGAAATTTCAACAGAATATCGATTTTCAAAC
TTGTAACATTTTGTATTCCATCCTTCGCTACACCTTAATTCAAACGCATA
AAATATAACAGAGATGATATCCAATACCCTTCCGTTACGTTTGTAGGAAT
ATGTTATTATCTCCCTAATCATAAAAACAGAGATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030351XLOC_030351Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047663-exon-scaffold_133-1575043694:143890..144724TCONS_00047663-exon-scaffold_133-1575043694:143890..144724Clytia hemisphaericaexon
TCONS_00047663-exon-scaffold_133-1510915933:143890..144724TCONS_00047663-exon-scaffold_133-1510915933:143890..144724Clytia hemisphaericaexon
TCONS_00047663-exon-scaffold_133-1491911889:143890..144724TCONS_00047663-exon-scaffold_133-1491911889:143890..144724Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_133supercontigscaffold_133:143890..144724 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.929824	1.40066	4.1606	5.0915	2.79288	2.06542	1.99457	2.61582	1.25405	1.13896	1.45289	1.71687	0.625263	1.06958	0.665724	0.6298	0.743063	0.706543	0.510871	0.481136	1.02118	1.33983	0.277164	0.674953	1.67879	2.41159	0.995958	1.213	0.933616	0.889172
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047663 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top