TCONS_00047635 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047635
Unique NameTCONS_00047635
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1432

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047635 ID=TCONS_00047635|Name=TCONS_00047635|organism=Clytia hemisphaerica|type=transcript|length=1432bp
GGAAATTCTGCGTTTTGaaagttcgacaaagtttgtTCAGTCATTCTTTG
GATAGAAAGACTCCAGTCGACACTTAGACGAGAGAGAAAACAGTAGCGTT
CCCCCCTCCAGCGGAGACTTTTCAAAGGGGCACCGAAAAGTGCAAAAAGA
cgcctctgattactaatttcggcacccctttgctcttttacaccttagat
atggcagttttcggtaaaattgagagaaaatacttgaaatttttacaaaa
tattaacTTTTCATAAGGGgcgcaaaaatcaaaatcttctaaaattgcct
ccccagtttgcccaaattttagtcgacccaccacgctactgagaGTACAG
TGAAAGACCTTCAATACACAATATTTTCATACACAAAGGAGCGtggtaaa
ataaaaatggcgacaaataaaacaaatttaatgtttttgttttttccagt
GTGAGGGAACGGAGGTtaaaaaatatcatgaaataaaCAAGCAGATAAAA
GAGAAGTCTTCATTTTGGTACCGGATTTACAAGAAAAAAGACCACAGATA
CAAACCAGATGTAAGGAGAAGAGAATCGGAAGCTACGGTACTACGTTTCA
tcgaaaacattttgaaaataaacgaTAGGCAGGAGTGAAAAAGAATACAT
TTAGAGTCTTGATACAGAATCAGATCAATGAAATTCACATATTGAAATTT
ATTGGAATTCGTACATTTGGAGTCTTTAGGAACAGAATCAGATCGACCAG
ATCGCAGATTGATATTTGTTGGAAAATTTAgatacgtgaagcaacaaaaa
gcCATTTTAACACACGTTCGAACAAAAATTGTAATTAGACAGACCCGAAA
GCATTCAAATATGGGTTGCACAATAAGCAGCAATACAGTACATCCATCAG
ATGAAAGTGACCAAAGATGCCATAAAAATGGAACACCACAATTAGTTGTT
GAATTGGCCGGTGTTGATAACCGTGAAGTCCAGCTAATGGTTGAACGAAA
AGAGATTGTTCATTACCGAGTTGTTTCATTAAGAACTGAGATAGACAGGT
ACGATGATATCATTTCTCAATTGGAAAACCCAAAATTGTATCATCCACCA
ACcaataaagaaaatataaacaataaTAAGAAAAACGATAATAATGGCGC
AAGTAGAAGTGAAAGTGAAATTAAAACATAATTAGCTTTAGAGTTGATTT
ATTAAGGGATGAAAGTtgttaaagaaaatgaaagtggtATCAAGAACGCG
TCGACGATgacaaaacttcatttttgagtAATGGAGCAAGCCGTTTGGAA
GTTAAATATTAGAAACACACAtttgaaaacacaaaaaaagaaTGGAAATA
ATTCGTGTCAGTTGAATTATACAAAGAGAAAGTGTACATAATAAGtaata
ctcttaggtgccaaataaacgccccccccccN
Run BLAST on NCBI

protein sequence of TCONS_00047635-protein

>TCONS_00047635-protein ID=TCONS_00047635-protein|Name=TCONS_00047635-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
MGCTISSNTVHPSDESDQRCHKNGTPQLVVELAGVDNREVQLMVERKEIV
HYRVVSLRTEIDRYDDIISQLENPKLYHPPTNKENINNNKKNDNNGASRS
ESEIKT
Run BLAST on NCBI

transcript from alignment at scaffold_133:232337..233904+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047635 ID=TCONS_00047635|Name=TCONS_00047635|organism=Clytia hemisphaerica|type=transcript|length=1568bp|location=Sequence derived from alignment at scaffold_133:232337..233904+ (Clytia hemisphaerica)
GGAAATTCTGCGTTTTGaaagttcgacaaagtttgtTCAGTCATTCTTTG
GATAGAAAGACTCCAGTCGACACTTAGACGAGAGAGAAAACAGTAGCGTT
CCCCCCTCCAGCGGAGACTTTTCAAAGGGGCACCGAAAAGTGCAAAAAGA
cgcctctgattactaatttcggcacccctttgctcttttacaccttagat
atggcagttttcggtaaaattgagagaaaatacttgaaatttttacaaaa
tattaacTTTTCATAAGGGgcgcaaaaatcaaaatcttctaaaattgcct
ccccagtttgcccaaattttagtcgacccaccacgctactgagaGTACAG
TGAAAGACCTTCAATACACAATATTTTCATACACAAAGGAGCGtggtaaa
ataaaaatggcgacaaataaaacaaatttaatgtttttgttttttccagt
GTGAGGGAACGGAGGTtaaaaaatatcatgaaataaaCAAGCAGATAAAA
GAGAAGTCTTCATTTTGGTACCGGATTTACAAGAAAAAAGACCACAGATA
CAAACCAGATGTAAGGAGAAGAGAATCGGAAGCTACGGTACTACGTTTCA
tcgaaaacattttgaaaataaacgaTAGGCAGGAGTGAAAAAGAATACAT
TTAGAGTCTTGATACAGAATCAGATCAATGAAATTCACATATTGAAATTT
ATTGGAATTCGTACATTGGGAGTCTTTAGGAACAGAATCAGATCAATGAA
ATTCACATATTGAAATTTATTGGAATTCGTACATTGGGAGTCTTTAGGAA
CAGAATCAGATCAGTGAAATTCACATATTGAAATTTATTGGAATTCGTAC
ATTTGGAGTCTTTAGGAACAGAATCAGATCGACCAGATCGCAGATTGATA
TTTGTTGGAAAATTTAgatacgtgaagcaacaaaaagcCATTTTAACACA
CGTTCGAACAAAAATTGTAATTAGACAGACCCGAAAGCATTCAAATATGG
GTTGCACAATAAGCAGCAATACAGTACATCCATCAGATGAAAGTGACCAA
AGATGCCATAAAAATGGAACACCACAATTAGTTGTTGAATTGGCCGGTGT
TGATAACCGTGAAGTCCAGCTAATGGTTGAACGAAAAGAGATTGTTCATT
ACCGAGTTGTTTCATTAAGAACTGAGATAGACAGGTACGATGATATCATT
TCTCAATTGGAAAACCCAAAATTGTATCATCCACCAACcaataaagaaaa
tataaacaataaTAAGAAAAACGATAATAATGGCGCAAGTAGAAGTGAAA
GTGAAATTAAAACATAATTAGCTTTAGAGTTGATTTATTAAGGGATGAAA
GTtgttaaagaaaatgaaagtggtATCAAGAACGCGTCGACGATgacaaa
acttcatttttgagtAATGGAGCAAGCCGTTTGGAAGTTAAATATTAGAA
ACACACAtttgaaaacacaaaaaaagaaTGGAAATAATTCGTGTCAGTTG
AATTATACAAAGAGAAAGTGTACATAATAAGtaatactcttaggtgccaa
ataaacgccccccccccN

Coding sequence (CDS) from alignment at scaffold_133:232337..233904+

>TCONS_00047635 ID=TCONS_00047635|Name=TCONS_00047635|organism=Clytia hemisphaerica|type=CDS|length=321bp|location=Sequence derived from alignment at scaffold_133:232337..233904+ (Clytia hemisphaerica)
ATGGGTTGCACAATAAGCAGCAATACAGTACATCCATCAGATGAAAGTGA
CCAAAGATGCCATAAAAATGGAACACCACAATTAGTTGTTGAATTGGCCG
GTGTTGATAACCGTGAAGTCCAGCTAATGGTTGAACGAAAAGAGATTGTT
CATTACCGAGTTGTTTCATTAAGAACTGAGATAGACAGGTACGATGATAT
CATTTCTCAATTGGAAAACCCAAAATTGTATCATCCACCAACcaataaag
aaaatataaacaataaTAAGAAAAACGATAATAATGGCGCAAGTAGAAGT
GAAAGTGAAATTAAAACATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030339XLOC_030339Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047635-exon-scaffold_133-1491911889:232337..233024TCONS_00047635-exon-scaffold_133-1491911889:232337..233024Clytia hemisphaericaexon
TCONS_00047635-exon-scaffold_133-1510915933:232337..233024TCONS_00047635-exon-scaffold_133-1510915933:232337..233024Clytia hemisphaericaexon
TCONS_00047635-exon-scaffold_133-1575043694:232337..233024TCONS_00047635-exon-scaffold_133-1575043694:232337..233024Clytia hemisphaericaexon
TCONS_00047635-exon-scaffold_133-1491911889:233093..233118TCONS_00047635-exon-scaffold_133-1491911889:233093..233118Clytia hemisphaericaexon
TCONS_00047635-exon-scaffold_133-1510915933:233093..233118TCONS_00047635-exon-scaffold_133-1510915933:233093..233118Clytia hemisphaericaexon
TCONS_00047635-exon-scaffold_133-1575043694:233093..233118TCONS_00047635-exon-scaffold_133-1575043694:233093..233118Clytia hemisphaericaexon
TCONS_00047635-exon-scaffold_133-1491911889:233187..233904TCONS_00047635-exon-scaffold_133-1491911889:233187..233904Clytia hemisphaericaexon
TCONS_00047635-exon-scaffold_133-1510915933:233187..233904TCONS_00047635-exon-scaffold_133-1510915933:233187..233904Clytia hemisphaericaexon
TCONS_00047635-exon-scaffold_133-1575043694:233187..233904TCONS_00047635-exon-scaffold_133-1575043694:233187..233904Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047635-proteinTCONS_00047635-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_133supercontigscaffold_133:232337..233904 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.236101	0.331972	1.37288	1.01863	0	0.0728801	1.48132	1.47671	0.515455	0.718284	0.493959	0.4465	0.487377	0.211239	0.217084	0.0830706	0.175529	0.437249	1.23548	2.42527	0.665338	0.505539	0.0883736	0.144681	0.268729	0.45482	0.208517	0.223782	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047635 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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