TCONS_00047612 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047612
Unique NameTCONS_00047612
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length709

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047612 ID=TCONS_00047612|Name=TCONS_00047612|organism=Clytia hemisphaerica|type=transcript|length=709bp
TCCACCAGCAACTACCCCACCAGCAACTACCCTACCAGCAACTACGAATC
CATCATCAACTTCAGAAACTACGACCACGACACtgaccacttgttcgaca
ggTGTCAACGAATTAGCTACCCTTTGCATCGTTGCAGTGAAGGTCCATCA
TACCAGCAATCCAAACATCTACGTCGAAACACTTGCTTTACTTGACAACG
GCTCACAAGCTACCTTCGTAACCGACGACGTCCTTTCCAACCTAGATGCG
CCATCCACCGATACTAACCTTGAAATCAACACTGTATCTGGAACCACAAC
CNGATGCGCCATCCACCGATACTAACCTTGAAATCAACACTGTATCTGGA
ACCACAACCGAGAGAAGCTCTATAATCAACGGTCTCTGCGTTTGTGCCAT
TGATCAACCTATACCCTTATCAATCAAGCTTCCGAAAGTTTACAGCCGAT
CAACACTACCTTCAGACGAGGCTGATATTCCTACACCCGCTCAGCTACAA
CCATGGCCTTACCTCAACCAAATCGCCAATCACTTACCTAAAATCAGAGG
AAAAGTTGGCTTACTCATTGGGTCAAACTGTCCCAAAGCTCTTGAACCAA
TGGAAATTGTTCATAGTCGAGACAATGGTCCATTTGCTTTCAGATCACGA
CTTGGTTGGTGCTTCACTGGTCAAGTCAAGTCAAATTCATCAAGCACGTC
TTGTCATCG
Run BLAST on NCBI

protein sequence of TCONS_00047612-protein

>TCONS_00047612-protein ID=TCONS_00047612-protein|Name=TCONS_00047612-protein|organism=Clytia hemisphaerica|type=polypeptide|length=154bp
MRHPPILTLKSTLYLEPQXDAPSTDTNLEINTVSGTTTERSSIINGLCVC
AIDQPIPLSIKLPKVYSRSTLPSDEADIPTPAQLQPWPYLNQIANHLPKI
RGKVGLLIGSNCPKALEPMEIVHSRDNGPFAFRSRLGWCFTGQVKSNSSS
TSCH
Run BLAST on NCBI

transcript from alignment at scaffold_132:211678..212386

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047612 ID=TCONS_00047612|Name=TCONS_00047612|organism=Clytia hemisphaerica|type=transcript|length=709bp|location=Sequence derived from alignment at scaffold_132:211678..212386 (Clytia hemisphaerica)
CGATGACAAGACGTGCTTGATGAATTTGACTTGACTTGACCAGTGAAGCA
CCAACCAAGTCGTGATCTGAAAGCAAATGGACCATTGTCTCGACTATGAA
CAATTTCCATTGGTTCAAGAGCTTTGGGACAGTTTGACCCAATGAGTAAG
CCAACTTTTCCTCTGATTTTAGGTAAGTGATTGGCGATTTGGTTGAGGTA
AGGCCATGGTTGTAGCTGAGCGGGTGTAGGAATATCAGCCTCGTCTGAAG
GTAGTGTTGATCGGCTGTAAACTTTCGGAAGCTTGATTGATAAGGGTATA
GGTTGATCAATGGCACAAACGCAGAGACCGTTGATTATAGAGCTTCTCTC
GGTTGTGGTTCCAGATACAGTGTTGATTTCAAGGTTAGTATCGGTGGATG
GCGCATCNGGTTGTGGTTCCAGATACAGTGTTGATTTCAAGGTTAGTATC
GGTGGATGGCGCATCTAGGTTGGAAAGGACGTCGTCGGTTACGAAGGTAG
CTTGTGAGCCGTTGTCAAGTAAAGCAAGTGTTTCGACGTAGATGTTTGGA
TTGCTGGTATGATGGACCTTCACTGCAACGATGCAAAGGGTAGCTAATTC
GTTGACAcctgtcgaacaagtggtcaGTGTCGTGGTCGTAGTTTCTGAAG
TTGATGATGGATTCGTAGTTGCTGGTAGGGTAGTTGCTGGTGGGGTAGTT
GCTGGTGGA

Coding sequence (CDS) from alignment at scaffold_132:211678..212386

>TCONS_00047612 ID=TCONS_00047612|Name=TCONS_00047612|organism=Clytia hemisphaerica|type=CDS|length=462bp|location=Sequence derived from alignment at scaffold_132:211678..212386 (Clytia hemisphaerica)
ATGACAAGACGTGCTTGATGAATTTGACTTGACTTGACCAGTGAAGCACC
AACCAAGTCGTGATCTGAAAGCAAATGGACCATTGTCTCGACTATGAACA
ATTTCCATTGGTTCAAGAGCTTTGGGACAGTTTGACCCAATGAGTAAGCC
AACTTTTCCTCTGATTTTAGGTAAGTGATTGGCGATTTGGTTGAGGTAAG
GCCATGGTTGTAGCTGAGCGGGTGTAGGAATATCAGCCTCGTCTGAAGGT
AGTGTTGATCGGCTGTAAACTTTCGGAAGCTTGATTGATAAGGGTATAGG
TTGATCAATGGCACAAACGCAGAGACCGTTGATTATAGAGCTTCTCTCGG
TTGTGGTTCCAGATACAGTGTTGATTTCAAGGTTAGTATCGGTGGATGGC
GCATCNGGTTGTGGTTCCAGATACAGTGTTGATTTCAAGGTTAGTATCGG
TGGATGGCGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030326XLOC_030326Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047612-proteinTCONS_00047612-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047612-exon-scaffold_132-1491911889:211678..212386TCONS_00047612-exon-scaffold_132-1491911889:211678..212386Clytia hemisphaericaexon
TCONS_00047612-exon-scaffold_132-1510915933:211678..212386TCONS_00047612-exon-scaffold_132-1510915933:211678..212386Clytia hemisphaericaexon
TCONS_00047612-exon-scaffold_132-1575043694:211678..212386TCONS_00047612-exon-scaffold_132-1575043694:211678..212386Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_132supercontigscaffold_132:211678..212386 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.185883	0.504068	0.472753	0.154467	0	0.27202	0.225838	0.190202	0.83972	0.295725	0	0.0612427	0.0982666	0.169571	0.0240724	0.00850466	0	0.200989	0	0.0686038	0.100388	0	0.00073239	0.333385	0.251441	0.232806	0.103835	0.518894	0.72294
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047612 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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