TCONS_00047610 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047610
Unique NameTCONS_00047610
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length611

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047610 ID=TCONS_00047610|Name=TCONS_00047610|organism=Clytia hemisphaerica|type=transcript|length=611bp
GTTAAAGTCAACACAATCAAGGTAAATTACGACGCAATTGCCATCTTGGA
AATCCGAATCAGTAGTTGGACCAAGATGAAAAGAGTCATCGCGCGAATGC
TTCAATGGTTGGTTAGGTATCGCCGAAAACTCGACGTTTCGATCATTCAA
AGTGCAGAAACGGTCATCTTCCAATCGATTCAAAGGAGAGCTTTCGCCAA
TGACATCAACAACCTAACGACAAAGAAACCCATCAAACGACATGGATCAC
TATGGCGACTTTCACCCTTTCTCGACTCGAACAGCTTGATTCGTGTCGGG
GAAGGATATCTCACTCGAACGTACCAGAGGAACTCAAACACCCAATCATC
CTACCAAAGGAATCAAACGTCACCAAGATGATCGTTCGAGCAGCCCATCA
ACAGATGCAACACAGAGGAAGAAATGCAACATTAAGTCGATTGAGAGATC
AAGGCTTTTGGGTTATCAACGGCAACTCGTTAGTGCGACACATAATTTCG
AAGTGTGTCTCGTGTCGTCGTCTCCGTGGAGCTCCGTCAACTCAGAAAAT
GGCCGATCTTCCAGATGATCGAACGGCTGAAACAGCACCTTTCACCTACG
TTGGAACGGAC
Run BLAST on NCBI

protein sequence of TCONS_00047610-protein

>TCONS_00047610-protein ID=TCONS_00047610-protein|Name=TCONS_00047610-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
VKVNTIKVNYDAIAILEIRISSWTKMKRVIARMLQWLVRYRRKLDVSIIQ
SAETVIFQSIQRRAFANDINNLTTKKPIKRHGSLWRLSPFLDSNSLIRVG
EGYLTRTYQRNSNTQSSYQRNQTSPR
Run BLAST on NCBI

transcript from alignment at scaffold_132:209287..209897

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047610 ID=TCONS_00047610|Name=TCONS_00047610|organism=Clytia hemisphaerica|type=transcript|length=611bp|location=Sequence derived from alignment at scaffold_132:209287..209897 (Clytia hemisphaerica)
GTCCGTTCCAACGTAGGTGAAAGGTGCTGTTTCAGCCGTTCGATCATCTG
GAAGATCGGCCATTTTCTGAGTTGACGGAGCTCCACGGAGACGACGACAC
GAGACACACTTCGAAATTATGTGTCGCACTAACGAGTTGCCGTTGATAAC
CCAAAAGCCTTGATCTCTCAATCGACTTAATGTTGCATTTCTTCCTCTGT
GTTGCATCTGTTGATGGGCTGCTCGAACGATCATCTTGGTGACGTTTGAT
TCCTTTGGTAGGATGATTGGGTGTTTGAGTTCCTCTGGTACGTTCGAGTG
AGATATCCTTCCCCGACACGAATCAAGCTGTTCGAGTCGAGAAAGGGTGA
AAGTCGCCATAGTGATCCATGTCGTTTGATGGGTTTCTTTGTCGTTAGGT
TGTTGATGTCATTGGCGAAAGCTCTCCTTTGAATCGATTGGAAGATGACC
GTTTCTGCACTTTGAATGATCGAAACGTCGAGTTTTCGGCGATACCTAAC
CAACCATTGAAGCATTCGCGCGATGACTCTTTTCATCTTGGTCCAACTAC
TGATTCGGATTTCCAAGATGGCAATTGCGTCGTAATTTACCTTGATTGTG
TTGACTTTAAC

Coding sequence (CDS) from alignment at scaffold_132:209287..209897

>TCONS_00047610 ID=TCONS_00047610|Name=TCONS_00047610|organism=Clytia hemisphaerica|type=CDS|length=381bp|location=Sequence derived from alignment at scaffold_132:209287..209897 (Clytia hemisphaerica)
TCATCTTGGTGACGTTTGATTCCTTTGGTAGGATGATTGGGTGTTTGAGT
TCCTCTGGTACGTTCGAGTGAGATATCCTTCCCCGACACGAATCAAGCTG
TTCGAGTCGAGAAAGGGTGAAAGTCGCCATAGTGATCCATGTCGTTTGAT
GGGTTTCTTTGTCGTTAGGTTGTTGATGTCATTGGCGAAAGCTCTCCTTT
GAATCGATTGGAAGATGACCGTTTCTGCACTTTGAATGATCGAAACGTCG
AGTTTTCGGCGATACCTAACCAACCATTGAAGCATTCGCGCGATGACTCT
TTTCATCTTGGTCCAACTACTGATTCGGATTTCCAAGATGGCAATTGCGT
CGTAATTTACCTTGATTGTGTTGACTTTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030324XLOC_030324Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047610-exon-scaffold_132-1491911889:209287..209897TCONS_00047610-exon-scaffold_132-1491911889:209287..209897Clytia hemisphaericaexon
TCONS_00047610-exon-scaffold_132-1510915933:209287..209897TCONS_00047610-exon-scaffold_132-1510915933:209287..209897Clytia hemisphaericaexon
TCONS_00047610-exon-scaffold_132-1575043694:209287..209897TCONS_00047610-exon-scaffold_132-1575043694:209287..209897Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047610-proteinTCONS_00047610-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_132supercontigscaffold_132:209287..209897 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.498218	0.491666	0.857434	0.233382	1.14609	0.665451	0.453853	1.28978	0.336541	1.5311	0.178824	0.630384	0.389521	0.304773	0.420181	0.215116	0.0662513	0	0.75052	0.294512	0	0.24972	0.101189	0.0919957	0.971987	0.597821	0.242025	0.167842	1.36414	2.64748
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047610 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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