TCONS_00047605 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047605
Unique NameTCONS_00047605
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length391

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047605 ID=TCONS_00047605|Name=TCONS_00047605|organism=Clytia hemisphaerica|type=transcript|length=391bp
atATAATCTGTATCTTGTTAACCATGACAACATCACTCGGAAAATGTTGT
CCAAAAAGAAATTGCACCTAAATGGCACTGGAATTTCACgttttgctcaa
aatttgaaagaatttatATTGGATAGTTATTGTTGAGATGAAATTGATGA
CCAGAATGATGATGTTCTTGAACCTGACTTGGACGATCTTAGGAATGGTA
ATTTGAATGGTTGGAAAtctttgcaaaatttgaaatttaaaaactcATCT
AATTTTATTATCTCTTATCTTAATATTAACTCAATTCGAAATAAGTTCTC
TGATCTTCAGGTTCTTgtggaaaaaacttttgatgtaaTTACCATAGCAG
AATCAAAACTCGATGAGTCTTTTCCTAGTTCTGACTTTAAT
Run BLAST on NCBI

transcript from alignment at scaffold_132:32593..32983

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047605 ID=TCONS_00047605|Name=TCONS_00047605|organism=Clytia hemisphaerica|type=transcript|length=391bp|location=Sequence derived from alignment at scaffold_132:32593..32983 (Clytia hemisphaerica)
ATTAAAGTCAGAACTAGGAAAAGACTCATCGAGTTTTGATTCTGCTATGG
TAAttacatcaaaagttttttccacAAGAACCTGAAGATCAGAGAACTTA
TTTCGAATTGAGTTAATATTAAGATAAGAGATAATAAAATTAGATgagtt
tttaaatttcaaattttgcaaagaTTTCCAACCATTCAAATTACCATTCC
TAAGATCGTCCAAGTCAGGTTCAAGAACATCATCATTCTGGTCATCAATT
TCATCTCAACAATAACTATCCAATataaattctttcaaattttgagcaaa
acGTGAAATTCCAGTGCCATTTAGGTGCAATTTCTTTTTGGACAACATTT
TCCGAGTGATGTTGTCATGGTTAACAAGATACAGATTATat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030319XLOC_030319Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047605-exon-scaffold_132-1491911889:32593..32983TCONS_00047605-exon-scaffold_132-1491911889:32593..32983Clytia hemisphaericaexon
TCONS_00047605-exon-scaffold_132-1510915933:32593..32983TCONS_00047605-exon-scaffold_132-1510915933:32593..32983Clytia hemisphaericaexon
TCONS_00047605-exon-scaffold_132-1575043694:32593..32983TCONS_00047605-exon-scaffold_132-1575043694:32593..32983Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_132supercontigscaffold_132:32593..32983 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.194933	0.246791	0.711663	0.0825344	17.9491	9.03733	3.90656	4.38951	2.88843	3.91057	1.00945	1.21933	0.304579	1.32583	0.635664	0.475146	0.345651	0.706363	0.699111	0.880267	0.663756	2.37	0.951729	0	0	0	0.502175	0.570521	0	0.220437
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047605 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top