TCONS_00047601 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047601
Unique NameTCONS_00047601
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length267

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047601 ID=TCONS_00047601|Name=TCONS_00047601|organism=Clytia hemisphaerica|type=transcript|length=267bp
ANGTAGTTAATCTTAAGCTCAAAAACTCTAACAATATTCTTCTTGCCTAT
TTGAATATAAACTCGATAAGATATAAGTTCTCTGGTCTAAAAGTTTTTGC
TGGGAATACGTTTGATGTTCTCACCATCGCAGAAACCAAACTAGATGAGT
CTTTTCCGAGTTCAGATTTCAAGTTTGAGGGTTATCACTTTCCTCCCTTT
CGTATCGATTGTAGCTCAGACAGTGGGGGTTTGTTAACTTATGTAAAAAA
CGACATTCCTGTGCGTA
Run BLAST on NCBI

transcript from alignment at scaffold_132:3624..3890

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047601 ID=TCONS_00047601|Name=TCONS_00047601|organism=Clytia hemisphaerica|type=transcript|length=267bp|location=Sequence derived from alignment at scaffold_132:3624..3890 (Clytia hemisphaerica)
TACGCACAGGAATGTCGTTTTTTACATAAGTTAACAAACCCCCACTGTCT
GAGCTACAATCGATACGAAAGGGAGGAAAGTGATAACCCTCAAACTTGAA
ATCTGAACTCGGAAAAGACTCATCTAGTTTGGTTTCTGCGATGGTGAGAA
CATCAAACGTATTCCCAGCAAAAACTTTTAGACCAGAGAACTTATATCTT
ATCGAGTTTATATTCAAATAGGCAAGAAGAATATTGTTAGAGTTTTTGAG
CTTAAGATTAACTACNT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030315XLOC_030315Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047601-exon-scaffold_132-1491911889:3624..3890TCONS_00047601-exon-scaffold_132-1491911889:3624..3890Clytia hemisphaericaexon
TCONS_00047601-exon-scaffold_132-1510915933:3624..3890TCONS_00047601-exon-scaffold_132-1510915933:3624..3890Clytia hemisphaericaexon
TCONS_00047601-exon-scaffold_132-1575043694:3624..3890TCONS_00047601-exon-scaffold_132-1575043694:3624..3890Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_132supercontigscaffold_132:3624..3890 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	57.9902	38.2198	32.3294	28.1217	4.88764	6.72175	2.39781	4.18341	0.653625	1.22599	0.671953	0.360555	3.0581	0.455264	0	0	0.163607	0.83711	0	0.616774	1.90579	0.566957	0	0.865856	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047601 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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