TCONS_00047585 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047585
Unique NameTCONS_00047585
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length951

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047585 ID=TCONS_00047585|Name=TCONS_00047585|organism=Clytia hemisphaerica|type=transcript|length=951bp
GTGAAGAAGCACAAAGTTATTCCTTCCGCACAAGATTTTGAAGTGAAAGA
AGTTCAAAATGGAACTACGATGGAGGAAATGTTACAAAACATTATACCAA
TGCAAGGAGATAATTGGCAAGTAACTTTCAAAGCCACTCGCGATGCTACG
AAATCCGGAGGCAGAACATTCTTACGGCTAACCTCGTCACCGATAAATAA
GAATTATTCAGAAGGTCACGCAGCACTCGTTATCAAGAAGTGGATATGAA
GATTGTGAAATATGCTTGTGACGGATGCCCAGTCAGATTCAAAGCATTTG
TGGATAACGTAGAAAAAGTTTCGTTGAACACCACTTCGACTGTTTGGTAT
AATGTCAGCTGCTTTGCTCCATGGTTTAATGATGATATTGACAAAACGAC
TGATTTGAAATATACATCGAACCCACCGTTATTTCGTAAGTTTATtccat
cccagctggcacacaacgttgtttcaatgttcatctaacgttatatggac
gttatgaacatcagataaacgttgaaacaacattgtgtgccagctgggat
agtctcgtatttgcacttttgaggaccttaaagtgactgaagcaatttgg
aacaacccgcagttttgacccttGAAAAATGGAGGGAGTGCTGATtaacc
gtcgtcctcagtcactCAGGAGGTAGAAAAAGTAGAAGctgtcgctgaaa
aacacacataatACATAATCTGGCTTGTCTCATTCAATAGTCCCGTGAGG
CAGTGGCGATTCTGAAGGGGGGGGCAAAATTTATGACGGAGATTGTAAAT
GTTCGTTAAAGTCCTCTTAGCCCCGCTACTAGGATAGTCAGCAAATATGA
ATATAAGaatatccctgtctcacagtcccaTGGAACGTACTTATTTCCAT
AGTTGGTATGATAGTTAATGTATAATCTGTAGTTCCTAGGTCTGAAAATT
C
Run BLAST on NCBI

transcript from alignment at scaffold_132:127826..139469-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047585 ID=TCONS_00047585|Name=TCONS_00047585|organism=Clytia hemisphaerica|type=transcript|length=11644bp|location=Sequence derived from alignment at scaffold_132:127826..139469- (Clytia hemisphaerica)
GTGAAGAAGCACAAAGTTATTCCTTCCGCACAAGATTTTGAAGTGAAAGA
AGGTATGTAATTCATATTCAAAAATTTATACCTTATCGGCCAAAACTTAG
TCGGCCTTAATATTAGTCGGCCTTAATTATTAGTCTGCCCTGATTTTAGT
CACCTTGTCAAAATTTAGTCACTAAGGGCCGACTAATAATTAAGTTTTGG
CCATTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAAANNN
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GGTCTGAAGTTTGTCGAACAAAGATTGTCTTGCATGGGAATATATAGAGC
AGTGCAGAAGAAAGTGCTGAGTGTTTTCAACAGAGTTACTTCGGCAACCA
CAGAAAGGGTCTAAAGTGTCGCGGAAGCCATGTCTAAATTTATGCCATTA
TGCCATTATGCCATTATGGCCATTTCTAAATTTTTAGTCGGCCCAAATTT
TTAGTCGGCCCCAATTTTAGTCACCAAGCCAAAATTTAGTCACTCAGGGC
CTGACATTATATAGTTGCAAAAGAATTGGTGCAGCTTTTCTAAAGGCTTG
GGGACACGAGAACATGGTTTCATTTTTTGTGAGGGAAATACACGCAAGAT
ACACTGATTTTGTCCCAAAGACAAAAGTGCAGATTTCACATTTATTGGTA
AAAAGAAAAATGGGGTGGAGACACGAGAAAGCGTTTCAGGTTGGTGGGAT
GGATCATGCTGCATTGCACCAACGCAAAAAAACTTCTCGTGTCCCCAAGC
CTCAAAACATTGACCTTTTTAGGGTTACTTTTAAAGCTGTTTTAGCTTTC
TTAGACCAAAGATTTTAGCCTGCACCGCCAAATTACAAAAAAAATCAATG
TTCCGACTTAAAAATTCGAAATTTCCATGAACCCAAAGAAAATCAACAGA
TCCAAGACCAAGCATATAAATAAACTAGCCTGGATATCCAAGCTCAAAAT
TTTAGAAAAAACAAAATTTACAACAACATACAAAGTTCTAAAATTATAGA
GCTTGGTCTCCCTAGAGAATGAAAGTGCAAACCCATGTTTCCTAGCCAAC
CCAGGGCAGCAAAACAGAAATTAATAGAAAAGTCTTACAAGATCTAAGCC
CTATCTTCACTAGCAACTGGAGGACTATCCTCTTTTTGCTTAAGAATTGC
TCCGCGCCGTGTAGATTGGCCCTTACGGCTTTAGCGAAGTGAGCGCAAGC
AGGCAGACTGCATTCTCATGTGGAGAATGCAAAACGCTCTAGGGAGACCA
GGTTGTAAACCAGAACATAAAATATCAAAAACTAGACTGAAATAGTTTAC
AGCCTGGATATCCAGGCTAATAAATAAGCATGAATTAAGGCTGAAAATGA
GATTTTGCTAAGCATATTGGGCCTCGACCCGATTTTCCCGTATGCTTATA
AAAAAAAAGTGTACCTTTTAAAACCTACAAAAAATAGAGGTACCCTCTAT
CTGAAAATTTAGGTGGAATTTGAGGCTGAAACTTTTTGTGTTGAAAGCAC
AAGACATGTATATGGTTTTTTCCCCAGCAGTGATGTTTTGTAAAAACCAG
TTTTCAGTTTTTCACGAGGAAGGGAAAAATGATCTTTTAGCTATTTACCC
CTTATAAAATGATTTTTCTCGAATTGCTTTTTATAAAATAGCTCTTTTCA
CTTATGTTACAATTCGATTATTAGTACATAATTATTTTCAAATCAAATGT
TAAAATCAAAATACACCTTAAAAACCTACACTATAACACCTTAAAACCTA
CACTATTAGACGTTAAAAACTACACTATTACACCTTAAAACCCATACTAT
TACACCTTAAAACCTACACTATAACACCTTAACATCTACACTATAACACC
TTAAAACCCATACTATTACACCTTAAAACCTACACTATAACACCTTAAAA
CCTACACTATTACACCTTAACATCTACACTATAACACCTTAAAACCTACA
CTATAACACCTTAAAAGCTACACTATTACACCTTAAAACCTACACTATAA
CACCTTAAAACCCATACTATTACACCTTAAAAGCTACACTATTACACCTT
AAAACCTACACTATTACACCTTAAAACCCATACTATTACACCTTAAAACC
CATACTATTACACCTTAAAACCTACACTATAACACCTTAAAACCTACACT
ATTGATTTACACCTTAAAACCTACACTATAAGACCCTAAAACCTACACTA
TTACACCTTAAAACCTACACTATAAGACCCTAAAACCTACACTATAAGAC
TCTAAAACCTACACTATTACACCTTAAAACCTACACTATAACACCTTAAA
ACCTACACTATTAGACGTTAAAACCTACACTATTACACCTTAAAACCTAC
ACTATTACACCTTAAAACCTACACTATTACACCTTAAAACCTACACTATT
ACACCTTAAAACCTACACTATAACACCTTAAAACCTACACTATAACACCT
TAAAACCTACACTATTAGACGTTAAAACCTACACAATTACACCTTAAAAC
CCATACTATTTTTTAGAAAACTATATATATAACTCATTGATTAAAATGAA
GAATAAAACAAATATGCAATAAACTATAAAGTGACTGCAAAAAAGGAATG
ACAGGTAAGACAGGAAAAACAAAACAAAACAAAACCATACAAAGAAAACG
ACCCAGAGACTTTAGCATAACCTTGCCGTCACGCCGGGCTGAAAGAAAAC
ACACGGAATACTCATGCGATAAATGATAAAAAGTATAAAAATTAATAGAA
ATTTGATTTGCATTAAATGTTCTGGTTTAAGTTATTTGCCATTTCGGCGA
AATCAACATCAGCCATCTCGATGGAGTGTTGATTCCTTCGTGTTCCTCTN
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NNNNNNNNNNNNNNNNNNNNNNNNGCTGGAGTGTCTTCTTGCTTTTTCAT
ACATTTGTTTCTGTGTCTTGTCCTTCCACCTTTGTTTTGAAATTCTTTCC
CACAAAAATCGCATGAATATGATCCCGGTTTGCTCTGCGTTGCTTGGGAC
AAGGGGATGATCTTGTTGTTTGGTGGTGATTTTTCTTGTTCTTGCTGTCG
AGGTCTCGCTACCGCTTCAGAGAATAGCTGAAAGAACGATTTCGCTGGTT
GTATCGCCTTTGTTGAGGAACAAGCAAAACTTTTCATATTTTCAGCTGTC
TTCAGGCCTGGACCAGGTGTTGATTGGTCACAAGTCTCATCTTTTTCACA
TCCTGTCGCCATTTCGAAAGCAAGCAAAACAGGGCAAAGTGTGGTGTATT
CTAGACTCTTCACTCGTTCGACGAGACGCGTCTACCTCCTGGCCGCAGAG
GATTTTTCTTCGGGCTTAATATTCGAGCCTGTCAGTCCAACCGACCCTCT
GCACCCTTGACTGCGGGCGTCTTTTCTTCGAGGTACACGTTCGCCCTCAC
ACTCACGCTACCTTGACTGCGGTAGTCTTTTCTTCAGGGTTTTTCGACCT
TGTCTAGCACCACTTCTGATTGTGTCGGGATAGATGTTTTGCGAAAAAGA
AGGCAGGTTCTGCTTGTGACACACGGAAGACTTTGGTTGTATCACGACGC
TTTCTTGAAGATTTCTTTCCGATATTCCAGATTTTAAACTCTTCTTGGTT
TTCTGTTCTCACCGGATTCTTTTCTTCTCCGCAACATGACCGTCCTACAC
TATTAGACGTTAAAACCTACACTATTACACCTTAAAACCCATACTATTAC
ACCTTAAAACCTACACTATAACACCTTAAAACCTACACTATTAGACGTTA
AAACCTACACAATTACACCTTAAAACCTACACTATAAGACCCTAAAACCT
ACACTATTACACCTTAAAACCTACACTATAACACCTTAAAACCTACACTA
TTAGACGTTAAAACCTCCGGGATTACACCTTAAAACCCATAATATTACAC
CTTAAAATCTACACTATAACACCTTAAAACCTACACAATTACACCTTAAA
ACCCATACTATTACACCTTAAAACCTACACTATTACACCTTAAAACCTAT
ACTATTACACCTTAACATCTACACTATTACACCTTAAAACCCACACTATA
ACACCTTAAAACCCATACTATTACACCTTAAAACCTACACGATTACACCT
TAAAACCTACACAATTACACCTTAAAACCTACACTATTAGTACTAGTAAT
CGTATGGTTTGGAGTGCAATTAACGATTAATCACGAGTAACAAAGGAGAA
AATAGTAATTTGCACGAGTCCGAAGGACGAGTGCNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNAGCTATTGTAACGTAAAATTTCTTTG
TTCTTTTTTTTATATTGAAGAAAAAAAATGTCTTTGTTTTTTATTATATA
GTAAAAAAAAGTATCTGACATAGAACTTGGGAGAGAAAAGAATAAGGGGA
CAAAAGTGTCCCCCCGCCGAAGAGTGCAAAAAGTGGTAATAGTGCAATTA
ACGATTAATCGCACTCCTCTAAACCAATCAGATTCGAGTAATTTTGCACG
GCTGACGATTACACCTTAAAACCTATACTATTACACCTTAAAACCTACAA
ACATTGACCCCTTGCTCACAACTAACTGTGAAGTAGCAATTCAGGTGATG
AACCGTGATTCAATCAAATACTTGCTCATTATCAAATTTGTGACATTTTG
GTATGCAATATGACCATATGTTTTTAGAAAGTCGATTTTCAGATTTTATT
GGCCACCACCATAAATGAGCTTTAAAGTAAAACTTTGAGGGTCTTACGAT
TTCTTTGGGGTCTAACAATGAAAAAATAATTTTTTTCATACCTACCATAT
AGTACCTGTATAGGTACCTAAAAAGTGTAGGTTTTTGACCTTAAATTCAA
TTGTGTAATCTCTGGGTCCGAAAAACTTGATTTTTTGAAGCGGTTTTAAT
AAAATTTTGAATAACTTCGAATTTTACGACACTTTTCAATAATTGAAATT
CTCAAAACTAGATATTTTATGATTCATGAAAGTACATTTATAAGGTTGTA
AAAAGGTGAATTATACAATACATTAAATTAAATTTGGTGGTTAAGAGAGC
CCAAAAATTTCTAGGTTTTAAAGAGACATAAAAGTAGTAAAATGTAAACA
TTGTGCGAACCACGTGTCATTAAAGAGAACAATTAAAATCACGTGTCCAA
AACAAACTTGTAAAACAATTGCGATACAATCAAAATCAGCCATATTTGTT
TCAATTTTTCATTTTGACATGTGACATGTGTTTTGATTTTGTATCCCGCT
GCATACGGTTTGCTTACAAATTTCGTCAGTACTTTTATGTCCCTTTAAAA
GGTATTCACTGGTACAAAACTGCTATATACCTTAAATTCTATCAAAAGTT
ACAGTTTCTTTGTCTCCACTGCAGATTATATTGAGGACGGGCTTGAATAA
ATCTTTCAAAATTCATTAAAATCTTTTTTAAATCCATTTATCATGTCGCT
TTTTGAACATGATTTACTTTTTCTTTTATAAGAACAATTTTAAAAGAACA
ATGAGGCTCAAAATCAGCGAAAAATAAGAACAATATTATAAGAACAATGC
TGAGCCTAGAATTATACAATTTCGGGGTCAAAGTAGTAAAAATTGAGTAC
AAATCCTAAAATACTTCAATTTCTTCATCCTATAAAGAAGAACGTCAAGA
TAAGAACAATTTGAGACTTAAAATGCCAAAAAAGTAAGAACAGTCTCGCC
TCATTAAAAATTTACTGGTGTTCTTATAAATAAAAAAGTGTATCTTTCTC
ATTTCTTTAGTTCAAAATGGAACTACGATGGAGGAAATGTTACAAAACAT
TATACCAATGCAAGGAGATAATTGGCAAGTAACTTTCAAAGCCACTCGCG
ATGCTACGAAATCCGGAGGCAGAACATTCTTACGGCTAACCTCGTCACCG
ATAAATAAGAATTATTCAGAAGGTCACGCAGCACTCGTTGTAAGTTCATA
GGATTCGTGCATCTGTTACATACTATTTTCAATTTTCAAAGGGGAAAATG
CACAAATCTGTGCAGATCTTCTTTCGAGAAAAATGCTGAATTACAGAAAC
GCTTTAAATTTGAATATTTCTATAACCTCAAAATTTCAGGTCAAATACAA
TAATGCAGGTATTCTAATTCGAACTCCGATAAACAATGATGTCCATTTTA
CCGTAAGTTTCTTTTTACCTGGAGATCAAGAAGTGGATATGAAGATTGTG
AAATATGCTTGTGACGGATGCCCAGTCAGATTCAAAGCATTTGTGGATAA
CGTAGAAAAAGTTTCGTTGAACACCACTTCGACTGTTTGGTATAATGTCA
GCTGCTTTGCTCCATGGTTTAATGATGATATTGACAAAACGACTGATTTG
AAATATACATCGAACCCACCGTTATTTCGTAAGTTTATTCCATCCCAGCT
GGCACACAACGTTGTTTCAATGTTCATCTAACGTTATATGGACGTTATGA
ACATCAGATAAACGTTGAAACAACATTGTGTGCCAGCTGGGATAGTCTCG
TATTTGCACTTTTGAGGACCTTAAAGTGACTGAAGCAATTTGGAACAACC
CGCAGTTTTGACCCTTGAAAAATGGAGGGAGTGCTGATTAACCGTCGTCC
TCAGTCACTCAGGAGGTAGAAAAAGTAGAAGCTGTCGCTGAAAAACACAC
ATAATACATAATCTGGCTTGTCTCATTCAATAGTCCCGTGAGGCAGTGGC
GATTCTGAAGGGGGGGGCAAAATTTATGACGGAGATTGTAAATGTTCGTT
AAAGTCCTCTTAGCCCCGCTACTAGGATAGTCAGCAAATATGAATATAAG
AATATCCCTGTCTCACAGTCCCATGGAACGTACTTATTTCCATAGTTGGT
ATGATAGTTAATGTATAATCTGTAGTTCCTAGGTCTGAAAATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030308XLOC_030308Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047585-exon-scaffold_132-1575043694:139418..139469TCONS_00047585-exon-scaffold_132-1575043694:139418..139469Clytia hemisphaericaexon
TCONS_00047585-exon-scaffold_132-1575043694:128781..128959TCONS_00047585-exon-scaffold_132-1575043694:128781..128959Clytia hemisphaericaexon
TCONS_00047585-exon-scaffold_132-1575043694:127826..128545TCONS_00047585-exon-scaffold_132-1575043694:127826..128545Clytia hemisphaericaexon
TCONS_00047585-exon-scaffold_132-1510915933:139418..139469TCONS_00047585-exon-scaffold_132-1510915933:139418..139469Clytia hemisphaericaexon
TCONS_00047585-exon-scaffold_132-1510915933:128781..128959TCONS_00047585-exon-scaffold_132-1510915933:128781..128959Clytia hemisphaericaexon
TCONS_00047585-exon-scaffold_132-1510915933:127826..128545TCONS_00047585-exon-scaffold_132-1510915933:127826..128545Clytia hemisphaericaexon
TCONS_00047585-exon-scaffold_132-1491911889:139418..139469TCONS_00047585-exon-scaffold_132-1491911889:139418..139469Clytia hemisphaericaexon
TCONS_00047585-exon-scaffold_132-1491911889:128781..128959TCONS_00047585-exon-scaffold_132-1491911889:128781..128959Clytia hemisphaericaexon
TCONS_00047585-exon-scaffold_132-1491911889:127826..128545TCONS_00047585-exon-scaffold_132-1491911889:127826..128545Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_132supercontigscaffold_132:127826..139469 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0682617	0.0632987	0.108274	0.188865	0.13887	0.052504	0.209931	0.183939	0.283214	0.107383	0	0.221754	2.18701	1.18664	1.74153	1.1466	1.46252	1.36974	1.78593	2.56094	2.26318	0.745796	0.725714	0.75252	0.166848	0.584159	0.67662	0.220982	0.977833	0.509841
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047585 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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