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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047570 ID=TCONS_00047570|Name=TCONS_00047570|organism=Clytia hemisphaerica|type=transcript|length=467bp
CTCAAAATTCCCATTTGAACAAAAGCATAAATTATCCTCAGTGTAGAACC
CATTCTTCTTATTGAATTTTGTGCgacatttcaaaatgcattCGATTTGT
GATCTAGCGTCAATGCTTTGCGAGTCTTCTGAGGGAAGGACGACGCCATT
TTGTTCGAGGATGCTCAGGTAGTGAGCAGCAAAAGCCAACGATTGAAGAT
CCAATAGAACGGTTAGTAAGCTGGCCCACTTATACATTTTCTTCCACAGT
TGAATCTCGAAGCGCTATATAGGAAGATTGTCTTGCATTGATGCTTCACA
AACAAAGATAAATCTTTGATCACAATTTTGGAGAGCCCACAAGCTTCCAC
CAGCATCGAATGAAACACATTCCTTTCTACCATTACCAgatctcgacttt
tgaagattaTTATAATAAACAACAGGGCTTCCATCACTCCATTGCCATTC
GGTTTCAAAAGATAAAC Run BLAST on NCBI transcript from alignment at scaffold_132:139807..145289+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047570 ID=TCONS_00047570|Name=TCONS_00047570|organism=Clytia hemisphaerica|type=transcript|length=5483bp|location=Sequence derived from alignment at scaffold_132:139807..145289+ (Clytia hemisphaerica)
CTCAAAATTCCCATTTGAACAAAAGCATAAATTATCCTCAGTGTAGAACC
CATTCTTCTTATTGAATTTTGTGCgacatttcaaaatgcattCGATTTGT
GATCTAGCGTCAATGCTTTGCGAGTCTTCTGAGGGAAGGACGACGCCATT
TTGTTCGAGGATGCTCAGGTAGTGAGCAGCAAAAGCCAACGATTGAAGAT
CCAATAGAACGGTTAGTAAGCTGGCCCACTTATACATTTTCTTCCACAGT
TGAATCTCGATAATTCGAAATCAAACGGGAAATCTGAtttcttcgaatta
cagagagatttgaattatagaaagtatatcaagagggtttctccttgact
aGGACAGGGAatgagttcgaattatagaaagattcgaatgatgGAACTTC
GAATAAGCGAAACACTactgtattttatttttgaataagaaaATCTTGCC
AACCAAAAACACTTTCAAGAGTCACTATCGCgtagtaaaaaataattttg
aaatgtcatgaaatttttgaaacatggaATGATAAACAACTCTTCACGAC
ACTTTTGGGAGCTCATTGATTTTCATGTCATATCTTTGTGACATTTTAGT
GGTCACATGGAAAATATGGATTAATAATTCAGGATGTTTTCCctcaaaaa
ttcatatttttaagGAGATGTaattttaagggctctgaccaaagtgaatt
tttaatatttgccatgtacaaaatataaatttctacttgatgtagcccac
aaactgtggcatgttatacatattctgttaggccaattatccgtgattct
gaaaatttaagaatcacaataaaaaattttgatgaagaagaaaaaaaaat
ttccgaaaaatctAAAACAGCTCAATTCTTTGGGGACAGtttaaaaaaac
ttcgaaacaaaaaggttaattacccattaaaacttagcactttttataaa
agaacaacatattagcaacatattattaacgtctttttaaagttcgtaac
gtcatttttgcaattaaattcttaattactcttaagggatttgattaaaa
agaaatttataaaggcaattctttgttaaaagtgttaaagaacctacacg
tttttttttataaggtcagagcccttaactcaAATTCAACCGCAAGATTT
GCTATTACATTGTGGTGTTCACACAATGTGATACTTATAAACGGCATATA
AATCGTATTGTACTTCTCAATTATTTAATTTTAAACCAAAAATCGCCTTA
ACTCGCGCGCGTGTGCTGATTTTTTAGCCAGAAACCAACAGACAAAACAT
AAAACAATCAAGAGTGAAACAATCTAACAAGTAAATTTATAGTAAAATGA
TCACTTATCATcatagtccttataaaaaactctggtctgaaagcttattg
ttttaacttttttttttcaaaagataaaaaatcgatttgctcaagttttt
gatAACGTTATTTATCCCAAAAcagtttagaccaactggcatttgtaatt
tggcatttgctcatgagggattcgattttaatagcttttccattgtattt
tctgtcatggcatttaaggaatcgtcNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtc
atggcatttaaggaatcgtctttttagagtcattactgaaaaggtgattc
cctcaagttcaactttgacagatcaaacaatgaaaNaaactttttgccgt
agggctaggctatggcaaatcttgcaaattttacaatctatagaaagaac
tgaataaaaaacgtgcaaatactttaaataatcaaaaatgtcattttttc
tctttcttttggttcctttgtttgatttgaaatgccagaaaaggggattc
ctttgctcaaaatggcatttcaaatgccaacgaaatgccaacacgctggc
atcattaggcaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNcatcattaggcatttgacaaaccgaaca
attgcgcggaacaatagaattcaaaagaatactgcaagcaattacaaatg
ccaggctggtctaaacgcagccacaaACGATACTTATTACCTGGAAGTTG
AATTTTGTTGGGAGTTTTATTAATAAATTATTCCAGATGGATGAGTATAA
AGTGAGAACAGCATGGTGGTCAGGGTTCATAGCTGTAAATAATCATGCTT
GCATAATGAAGGACCCCTCAATGAAGGATGAGGATAAATGGGAGGGTTTC
ATCCCGTGGTGGGCACTAATTATTTCTCGAAATtctgattacacgttttt
ttttataagaacaaactatataagaacataaggcttcgaggcccaaaaaa
ttaagaacattctaagaacattcgaaggctttgGGGACTTAAAAACATGC
Attttcttaagaaattacaacaaaatgctcaaaaaatgctgaaaataaga
acattttaagaacatttttaggcttcaaatccaaaaaactaagaacatcc
gaaggcttcgaaaatttttgacgttcttataaaaaaaaaacgtgtacgtc
agtaaaaaataggatttttctttttttcctaatttctgctgacgtcatga
aaattttgaaaaaattctttttttaaacgaTCGACttttctttggtgaaa
gtttgaagacaatcggataaaccattcttgagaaattcaatgtttagttt
ttatgacgtcatcgattatgacgtaataaccagtttttacagtttttcgc
gaaaatcagtgaaaaaacaattaggttacacatcaggttagaaacttgGC
TAATTTGCGAAAGCTAATATACCGAgaccaattaaaaaaaactggGCGAC
TTTATTCTTTCGTTTGACTTTATCTTTACGGTGTGAGATAAGTCAAGTTC
TCGCCTGTTTTGCAAAAGATTGTGAAAttcttgaataaaaatttaagaaa
aaaccgcaaaattttttctctcgaaataatttgaaaagccgtgaaatatt
ttaaaaagctttatccTCGTCAAATGCGAAAATTCTTCCCCTAAAACATa
cagagttttttttttcaagcgaaAATTCAGAATACAATAACATAGTTTTC
AAACATGCAAACAATATACTCATAAAGTATTGGTCTGTTGTCAAAATACT
GATTTAAAACATCTGATTTTCCTTTTTGACAGACTTACTCTGTCATATAC
TCTTTTTCTTATCTAAGtaaagaacgaaaaaaaaacatatcaaaCGAATC
AAGTTCTCAATGATGCATTGTATGTTTCGTTAATAATTGATTCAAAATTA
AATGAACTTCAGTTCAAAAACCATAAAGTTTTGTTGTAACTTAGTAATGA
ATTTGGACTATTTTTAGGGGAACTTTGAttgaagaaatttaaaaaatctt
tttaggaTATAAATTCTATATGGTGGAATCAgcattttttaagttaaaac
attattttttattcCTAAGTGCCTGGAATTTCCCCATCTATCAATTTGAA
TCCCtacaaaataatataaattCTGCAAACCACCAAATTAACTACACGAC
AAAATCAATATACTTattcttaggtgccaaataaacgggggggggggNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtgggggggggggggggg
ggcgtttatttggcacctaagagtaaggtacacgtttcttttcataagaa
catccaaaatttttgaagccttcggatgttctcaactttttaagttttaa
acctataaatattcctaacatgttcttattttcaccattctgtgggtatt
tttgtgcatttttctaagaaaacagGTATTTTAGAGCcgacaaagtctta
aaatgttcttaacttgttcttaacattttgaccatcgaagccttatgggg
ggcttttcacttttacggtacgacggtattgggccttttttccCCACTGT
AATCGGTATTAccaaaaaaacgacgggattacggtatttcattttctacc
ggtatcggtatttAGGTAATTAGACTTCTTTtatcgacggtattacggta
tttgacccaaatttttgtcggtatgacagtatttaagacccctgaaaacc
ccccttatgttcttatatagtttgttcttataaaaaaacgtgtattagaa
TTCTAGCTCCTTACGTTGTTACCAAGTAGGAGTAGGAGGCCTTTAGagtt
attgaaatatttattttgtaaTTCAAGTGGactcaatagaccttatcgga
gtttttgatttttctaaaaaaacgatgcattgtgggattgtttcgagtgt
attacaatagaaatctcttaggaattcctcaagggaattctattgtaata
cactcgaaacaatcccacaatgcatcacttttttagaaaaatcgaaAACT
TCGATAAGGTCTATTTCGTATTGTATTCTAAACGTTGCGTCAAGCTTACT
CTCAAACTATAAATTTGAGCAGCAGATTTGTTTGACTTGAGGGTCAAATC
TTACAACCCAAGGTAAAAATGTAtagtaaataaattttttcaagtacgtc
aataaaagatttttaggctcaaaagtTGTCAAAAGATAAGCACATCCAGG
TTCAGCTAAAATTAAGACATTTTAATAACAAAAAACTGTGTAATTAAAAA
TCATCTtgcgaaaacaaaaacattatagCTTAATACTGTAGAAAACACAA
AGAAGGTCAAATGAAAATGACATACAAGCGCTATATAGGAAGATTGTCTT
GCATTGATGCTTCACAAACAAAGATAAATCTTTGATCACAATTTTGGAGA
GCCCACAAGCTTCCACCAGCATCGAATGAAACACATTCCTTTCTACCATT
ACCAgatctcgacttttgaagattaTTATAATAAACAACAGGGCTTCCAT
CACTCCATTGCCATTCGGTTTCAAAAGATAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047570-exon-scaffold_132-1491911889:139807..140065 | TCONS_00047570-exon-scaffold_132-1491911889:139807..140065 | Clytia hemisphaerica | exon |
| TCONS_00047570-exon-scaffold_132-1510915933:139807..140065 | TCONS_00047570-exon-scaffold_132-1510915933:139807..140065 | Clytia hemisphaerica | exon |
| TCONS_00047570-exon-scaffold_132-1575043694:139807..140065 | TCONS_00047570-exon-scaffold_132-1575043694:139807..140065 | Clytia hemisphaerica | exon |
| TCONS_00047570-exon-scaffold_132-1491911889:145082..145289 | TCONS_00047570-exon-scaffold_132-1491911889:145082..145289 | Clytia hemisphaerica | exon |
| TCONS_00047570-exon-scaffold_132-1510915933:145082..145289 | TCONS_00047570-exon-scaffold_132-1510915933:145082..145289 | Clytia hemisphaerica | exon |
| TCONS_00047570-exon-scaffold_132-1575043694:145082..145289 | TCONS_00047570-exon-scaffold_132-1575043694:145082..145289 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_132 | supercontig | scaffold_132:139807..145289 + |
Blast
The following BLAST results are available for this feature:
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