TCONS_00047569 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047569
Unique NameTCONS_00047569
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length613

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047569 ID=TCONS_00047569|Name=TCONS_00047569|organism=Clytia hemisphaerica|type=transcript|length=613bp
CTCAAAATTCCCATTTGAACAAAAGCATAAATTATCCTCAGTGTAGAACC
CATTCTTCTTATTGAATTTTGTGCgacatttcaaaatgcattCGATTTGT
GATCTAGCGTCAATGCTTTGCGAGTCTTCTGAGGGAAGGACGACGCCATT
TTGTTCGAGGATGCTCAGGTAGTGAGCAGCAAAAGCCAACGATTGAAGAT
CCAATAGAACGGTTAGTAAGCTGGCCCACTTATACATTTTCTTCCACAGT
TGAATCTCGATAATTCGAAATCAAACGGGAAATCTGAtttcttcgaatta
cagagagatttgaattatagaaagtatatcaagagggtttctccttgact
aGGACAGGGAatgagttcgaattatagaaagattcgaatgatgGAACTTC
GAATAAGCGAAACACTactgtattttatttttgaataagaaaATCTTGCC
AACCAAAAACACTTTCAAGAGTCACTATCGCgtagtaaaaaataattttg
aaatgtcatgaaatttttgaaacatggaATGATAAACAACTCTTCACGAC
ACTTTTGGGAGCTCATTGATTTTCATGTCATATCTTTGTGACATTTTAGT
GGTCACATGGAAA
Run BLAST on NCBI

transcript from alignment at scaffold_132:139807..140419+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047569 ID=TCONS_00047569|Name=TCONS_00047569|organism=Clytia hemisphaerica|type=transcript|length=613bp|location=Sequence derived from alignment at scaffold_132:139807..140419+ (Clytia hemisphaerica)
CTCAAAATTCCCATTTGAACAAAAGCATAAATTATCCTCAGTGTAGAACC
CATTCTTCTTATTGAATTTTGTGCgacatttcaaaatgcattCGATTTGT
GATCTAGCGTCAATGCTTTGCGAGTCTTCTGAGGGAAGGACGACGCCATT
TTGTTCGAGGATGCTCAGGTAGTGAGCAGCAAAAGCCAACGATTGAAGAT
CCAATAGAACGGTTAGTAAGCTGGCCCACTTATACATTTTCTTCCACAGT
TGAATCTCGATAATTCGAAATCAAACGGGAAATCTGAtttcttcgaatta
cagagagatttgaattatagaaagtatatcaagagggtttctccttgact
aGGACAGGGAatgagttcgaattatagaaagattcgaatgatgGAACTTC
GAATAAGCGAAACACTactgtattttatttttgaataagaaaATCTTGCC
AACCAAAAACACTTTCAAGAGTCACTATCGCgtagtaaaaaataattttg
aaatgtcatgaaatttttgaaacatggaATGATAAACAACTCTTCACGAC
ACTTTTGGGAGCTCATTGATTTTCATGTCATATCTTTGTGACATTTTAGT
GGTCACATGGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030301XLOC_030301Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047569-exon-scaffold_132-1491911889:139807..140419TCONS_00047569-exon-scaffold_132-1491911889:139807..140419Clytia hemisphaericaexon
TCONS_00047569-exon-scaffold_132-1510915933:139807..140419TCONS_00047569-exon-scaffold_132-1510915933:139807..140419Clytia hemisphaericaexon
TCONS_00047569-exon-scaffold_132-1575043694:139807..140419TCONS_00047569-exon-scaffold_132-1575043694:139807..140419Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_132supercontigscaffold_132:139807..140419 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0878162	0	0	0.486384	0.355275	0	0.470636	0.119486	0.165455	0.0916622	0.100819	0	0.809702	0.653695	0.249174	0.350242	0.608529	1.11862	1.86314	0.471393	2.55493	2.97218	0.621512	0.583658	0.689115	0.328108	0.528325	0.269293	0.906311	0.235909
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047569 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top