TCONS_00047562 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047562
Unique NameTCONS_00047562
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length365

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047562 ID=TCONS_00047562|Name=TCONS_00047562|organism=Clytia hemisphaerica|type=transcript|length=365bp
AATGAGAACGTTGAGAATGTCAGTGACTTTGTTTTCCTGGGAAGTAACGT
TCCAGGCACTACAAACGACATCAAACGAAGACTGGGCTTAGCATCTTCCA
GCTTTGGACGCTTAAGAGATCAAATATGGCGTAACAAAGACATAAGCCTG
AAGCTGAAATTACGACTCTACAACGCGCTCATCGTCCCCATAACAATTTA
TGCCTCGGAAACCTGGACACTGAAAAAATCAGATACACAGTTACTGCTAG
TTTTCGAAATAAGATGTTTCAGATCACTTCTCGGCCTTACATTAATGGAC
CGTGTTCGTAATGTTGAAATCAGAAACCGGCTTGGAGTCACCACCACCAT
CGTTGACATCGTTAG
Run BLAST on NCBI

protein sequence of TCONS_00047562-protein

>TCONS_00047562-protein ID=TCONS_00047562-protein|Name=TCONS_00047562-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
NENVENVSDFVFLGSNVPGTTNDIKRRLGLASSSFGRLRDQIWRNKDISL
KLKLRLYNALIVPITIYASETWTLKKSDTQLLLVFEIRCFRSLLGLTLMD
RVRNVEIRNRLGVTTTIVDIV
Run BLAST on NCBI

transcript from alignment at scaffold_131:185653..186017

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047562 ID=TCONS_00047562|Name=TCONS_00047562|organism=Clytia hemisphaerica|type=transcript|length=365bp|location=Sequence derived from alignment at scaffold_131:185653..186017 (Clytia hemisphaerica)
CTAACGATGTCAACGATGGTGGTGGTGACTCCAAGCCGGTTTCTGATTTC
AACATTACGAACACGGTCCATTAATGTAAGGCCGAGAAGTGATCTGAAAC
ATCTTATTTCGAAAACTAGCAGTAACTGTGTATCTGATTTTTTCAGTGTC
CAGGTTTCCGAGGCATAAATTGTTATGGGGACGATGAGCGCGTTGTAGAG
TCGTAATTTCAGCTTCAGGCTTATGTCTTTGTTACGCCATATTTGATCTC
TTAAGCGTCCAAAGCTGGAAGATGCTAAGCCCAGTCTTCGTTTGATGTCG
TTTGTAGTGCCTGGAACGTTACTTCCCAGGAAAACAAAGTCACTGACATT
CTCAACGTTCTCATT

Coding sequence (CDS) from alignment at scaffold_131:185653..186017

>TCONS_00047562 ID=TCONS_00047562|Name=TCONS_00047562|organism=Clytia hemisphaerica|type=CDS|length=363bp|location=Sequence derived from alignment at scaffold_131:185653..186017 (Clytia hemisphaerica)
AACGATGTCAACGATGGTGGTGGTGACTCCAAGCCGGTTTCTGATTTCAA
CATTACGAACACGGTCCATTAATGTAAGGCCGAGAAGTGATCTGAAACAT
CTTATTTCGAAAACTAGCAGTAACTGTGTATCTGATTTTTTCAGTGTCCA
GGTTTCCGAGGCATAAATTGTTATGGGGACGATGAGCGCGTTGTAGAGTC
GTAATTTCAGCTTCAGGCTTATGTCTTTGTTACGCCATATTTGATCTCTT
AAGCGTCCAAAGCTGGAAGATGCTAAGCCCAGTCTTCGTTTGATGTCGTT
TGTAGTGCCTGGAACGTTACTTCCCAGGAAAACAAAGTCACTGACATTCT
CAACGTTCTCATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030295XLOC_030295Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047562-exon-scaffold_131-1491911889:185653..186017TCONS_00047562-exon-scaffold_131-1491911889:185653..186017Clytia hemisphaericaexon
TCONS_00047562-exon-scaffold_131-1510915933:185653..186017TCONS_00047562-exon-scaffold_131-1510915933:185653..186017Clytia hemisphaericaexon
TCONS_00047562-exon-scaffold_131-1575043694:185653..186017TCONS_00047562-exon-scaffold_131-1575043694:185653..186017Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047562-proteinTCONS_00047562-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_131supercontigscaffold_131:185653..186017 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.54843	3.70721	3.60497	0.647878	1.22676	2.5771	2.50621	3.0502	1.2426	4.51025	4.05203	2.72634	1.21001	1.37684	0.903962	0.415753	0.569675	0.387855	0	0.282432	0.219884	0.64351	0.521514	0.609673	0.787886	1.08959	0	0.332804	1.51452	0.257176
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047562 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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