TCONS_00047550 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047550
Unique NameTCONS_00047550
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1395

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047550 ID=TCONS_00047550|Name=TCONS_00047550|organism=Clytia hemisphaerica|type=transcript|length=1395bp
aaaaaaagcttttagtCAAGTGGTGcacttcagaaaaaaactacTTTTGT
AATCAAACACTATAAAAGAAGGCaagagaaacatttttcattcACTTAAT
AGTAAACACACCAACGAGCAACACATACCTCGAAAAATTCTCATTACAGA
AACAAAAATATGGCATCATCAACGAAATTTCTATTCCAGGCAACTCTGCT
TTTCGTATTTATTGCCATGGTTCACAGTGGACAAGATCTCTTTACCGgTC
CACGGCCAACTTTCACCACAGCAACATCAACCGTCACACCGAAAAACAAA
TGTGCTCATGCCTGCAGAGACTTATCGATACCGATTGGCATCATGCGTTG
CGCTAATTGTACAAGAGTCAATTTCACTTTAAAGGACCTTGGAAAACCAA
CTTTTACCCCCACGTTCACATGGGGTATTAAAATCACCAGACCTAACCAA
AAAGTCATTACAAAACCAACAATAACAACAACCTTATCAAAGAGCTACGA
AAGATTGTGCAAGGAGTGCTTACAATACTCTATGAAACCAAAATTATGTC
ATCAAGTCTGCCAAGCATGGTTAAACGCCCAAACCACACCAACCTTGGCA
CCCCGTCCTCCAGCAGTATTCAGAAACGGAAAAACTCAACCTCGACAACC
TACAGCCAAACCCTCAGAATCTGAAATCAAAGTAACCAGAATTACTGAAA
AAGACTTAATTTCTACTTTGTTGGAATACAGAGAACGTGAGTTTTGGTTC
GTTGCGTTCGCTTTTGGTTGCGTGATCGTCTTGCTTCTCTTGATCGTCAT
CATGTTTTGCTCGCACAAACGACGCACGCACAAGATTGTCAAACCTCGAA
TGGATTTCTGCAACATCTAAACGATCtaactttaaaaaatgatgaGGTAG
TCATTCATGGTTCCTTAGCAGGATAAACCAATCAGAGACTCAGAAGGAGC
CTAAAGATGTAATGAAGTTACGGGGATATTCAGAGAACAGTCAATGTTGA
ATTCTCCCGATCAAAAGCAACCCAATTATTGGATGAAATAAACTTTTACA
CCAATCCAAACTCAAACTCTATTATAAACCACTACGAGCTGGGACTCGAT
AAAGTGGAATGGAAACTCGCTTGAAAAAAATGAGGGTGTTTTATCcctct
caaaaagttaaaatttaaaatatttttttgtttaaaaaatttctaatgTT
ATTTAATTTCAGTTGTTTNCcctctcaaaaattaaaatttaaaatatttt
tttgtttaaaaaatttctaatgTTATTTAATTTCAGTTGTTTTAATACAT
GTAAATAGTTTTatgttaaaattaaaaaagtttttgtacaaaatttattt
ttctattaaATATTGCTGGTTCAATATATTTCGTAAATTAAAACA
Run BLAST on NCBI

protein sequence of TCONS_00047550-protein

>TCONS_00047550-protein ID=TCONS_00047550-protein|Name=TCONS_00047550-protein|organism=Clytia hemisphaerica|type=polypeptide|length=236bp
MASSTKFLFQATLLFVFIAMVHSGQDLFTGPRPTFTTATSTVTPKNKCAH
ACRDLSIPIGIMRCANCTRVNFTLKDLGKPTFTPTFTWGIKITRPNQKVI
TKPTITTTLSKSYERLCKECLQYSMKPKLCHQVCQAWLNAQTTPTLAPRP
PAVFRNGKTQPRQPTAKPSESEIKVTRITEKDLISTLLEYREREFWFVAF
AFGCVIVLLLLIVIMFCSHKRRTHKIVKPRMDFCNI
Run BLAST on NCBI

transcript from alignment at scaffold_131:187688..190440-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047550 ID=TCONS_00047550|Name=TCONS_00047550|organism=Clytia hemisphaerica|type=transcript|length=2753bp|location=Sequence derived from alignment at scaffold_131:187688..190440- (Clytia hemisphaerica)
AAAAAAAGCTTTTAGTCAAGTGGTGCACTTCAGAAAAAAACTACTTTTGT
AATCAAACACTATAAAAGAAGGCAAGAGAAACATTTTTCATTCACTTAAT
AGTAAACACACCAACGAGCAACACATACCTCGAAAAATTCTCATTACAGA
AACAAAAATATGGCATCATCAACGAAATTTCTATTCCAGGCTGCTCTGCT
TTTCGTATTTATTGCCGTGGTTCACAGTGGACAAGATCTCTTTACCGGTA
AGTTCAATTTTCCTTCACCTCATACATTTCTATCTATTTTTAATTCTACC
CTCTTTACGCTGCTAGTGATATTTTCACACATCAGCCCCTATAACCCTAC
TGCCTAACGAATTTCCTGCCAGTATTGGCCGTAAATGATGCTGAATGAAC
ACAGCAATAAAACTTAAAAGCATGAATCAAAACATCAATTGCTGTATTTA
ACACATTTGAAAATTGCATTGAGTTCTTATCTTTAAATATTTTCCTTATT
TTCAGGTCCACGGCCAACTTTCACCACAGCAACATCAACCGTCACACCGA
AAAACAAATGTGCTCATGCCTGCAGAGACTTATCGATACCGATTGGCATC
ATGCGTTGCGCTAATTGTACAAGAGTCAATTTCACTTTAAAGGACCTTGG
AAAACCAACTTTTACCCCCACGTTCACATGGGGTATTAAAATCACCAGAC
CTAACCAAAAAGTCATTACAAAACCAACAATAACAACAACCTTATCAAAG
AGCTACGAAAGATTGTGCAAGGAGTGCTTACAATACTCTATGAAACCAAA
ATTATGTCATCAAGTCTGCCAAGCATGGTTAAACGCCCAAACCACACCAA
CCTTGGCACCCCGTCCTCCAGCAGTATTCAGAAACGGAAAAACTCAACCT
CGAAAACCTACACCCAAACATTCAGAATCTGAAATCAAAGTAACCAGAAT
TACTGAAAAAGACTTAATTTCTACTTTGTTGGAGTACAGAGAACGTGAGT
TTTGGTTCGTTGCGTTCGCTTTTGGTTGCGTGATTGTCTTGCTTCTCTTG
ATCGTCATCATGTTTTGCTCGCACAAACGACGCACGCACAAGATTGTCAA
ACCTCGAATGGATTTCTGCAACATCTAAACGATCTAACTTTAAAAAATGA
TGAGGTAGTCATTCATGGTTCCTTAGCAGGATAAACCAATCAGAGACTCA
GAAGGAGCCTAAAGATGTAATGAAGTTACGGGGATATTCAGNCACAGAAA
CAAAAATATGGCATCGTCAACGAAATTTCTATTGCAGGCAACTCTGCTTT
TCGTATTTATTGCCATGGTTCACAGTGGACAAGATCTCTTTACCGGTAAG
TTCAATTTTCCTTCACCTCATACATTTCTATTTATTTTTAATTCTACCCT
CTTTACGCTGCTAGTGATATTTTCACACATCAGCCCCTATAACCCTACTG
CCTAACGAATTTCCTGCTTGTATTTTGGCCGTAAATGATGCTGAATGAAC
ACAGCAATAAAACTTAAAAGCATGAATCAAAACATCAATTGCTGTATTTA
ACACATTTGAAAATTGCATTGAGTTCTTATCTTTAAATATTTTCCTTATT
TTCAGGTCCACGGCCAACTTTCACCACAGCAACATCAACCGTCACACCGA
AAAACAAATGTGCTCATGCCTGCAGAGACTTATCGATACCGATTGGCATC
ATGCGTTGCGCTAATTGTACAAGAGTCAATTTCACTTTAAAGGACCTTGG
AAAACCAACTTTTACCCCCACGTTCACATGGGGTATTAAAATCACCAGAC
CTAACCAAAAAGTCATTACAAAACCAACAATAACAACAACCTTATCAAAG
AGCTACGAAAGATTGTGCAAGGAGTGCTTACAATACTCTATGAAACCAAA
ATTATGTCATCAAGTCTGCCAAGCATGGTTAAACGCCCAAACCACACCAA
CCTTGGCACCCCGTCCTCCAGCAGTATTCAGAAACGGAAAAACTCAACCT
CGACAACCTACAGCCAAACCCTCAGAATCTGAAATCAAAGTAACCAGAAT
TACTGAAAAAGACTTAATTTCTACTTTGTTGGAATACAGAGAACGTGAGT
TTTGGTTCGTTGCGTTCGCTTTTGGTTGCGTGATCGTCTTGCTTCTCTTG
ATCGTCATCATGTTTTGCTCGCACAAACGACGCACGCACAAGATTGTCAA
ACCTCGAATGGATTTCTGCAACATCTAAACGATCTAACTTTAAAAAATGA
TGAGGTAGTCATTCATGGTTCCTTAGCAGGATAAACCAATCAGAGACTCA
GAAGGAGCCTAAAGATGTAATGAAGTTACGGGGATATTCAGAGAACAGTC
AATGTTGAATTCTCCCGATCAAAAGCAACCCAATTATTGGATGAAATAAA
CTTTTACACCAATCCAAACTCAAACTCTATTATAAACCACTACGAGCTGG
GACTCGATAAAGTGGAATGGAAACTCGCTTGAAAAAAATGAGGGTGTTTT
ATCCCTCTCAAAAAGTTAAAATTTAAAATATTTTTTTGTTTAAAAAATTT
CTAATGTTATTTAATTTCAGTTGTTTNCCCTCTCAAAAATTAAAATTTAA
AATATTTTTTTGTTTAAAAAATTTCTAATGTTATTTAATTTCAGTTGTTT
TAATACATGTAAATAGTTTTATGTTAAAATTAAAAAAGTTTTTGTACAAA
ATTTATTTTTCTATTAAATATTGCTGGTTCAATATATTTCGTAAATTAAA
ACA

Coding sequence (CDS) from alignment at scaffold_131:187688..190440-

>TCONS_00047550 ID=TCONS_00047550|Name=TCONS_00047550|organism=Clytia hemisphaerica|type=CDS|length=2133bp|location=Sequence derived from alignment at scaffold_131:187688..190440- (Clytia hemisphaerica)
GTCCACGGCCAACTTTCACCACAGCAACATCAACCGTCACACCGAAAAAC
AAATGTGCTCATGCCTGCAGAGACTTATCGATACCGATTGGCATCATGCG
TTGCGCTAATTGTACAAGAGTCAATTTCACTTTAAAGGACCTTGGAAAAC
CAACTTTTACCCCCACGTTCACATGGGGTATTAAAATCACCAGACCTAAC
CAAAAAGTCATTACAAAACCAACAATAACAACAACCTTATCAAAGAGCTA
CGAAAGATTGTGCAAGGAGTGCTTACAATACTCTATGAAACCAAAATTAT
GTCATCAAGTCTGCCAAGCATGGTTAAACGCCCAAACCACACCAACCTTG
GCACCCCGTCCTCCAGCAGTATTCAGAAACGGAAAAACTCAACCTCGACA
ACCTACAGCCAAACCCTCAGAATCTGAAATCAAAGTAACCAGAATTACTG
AAAAAGACTTAATTTCTACTTTGTTGGAATACAGAGAACGTGAGTTTTGG
TTCGTTGCGTTCGCTTTTGGTTGCGTGATCGTCTTGCTTCTCTTGATCGT
CATCATGTTTTGCTCGCACAAACGACGCACGCACAAGATTGTCAAACCTC
GAATGGATTTCTGCAACATCTAAGCAACTCTGCTTTTCGTATTTATTGCC
ATGGTTCACAGTGGACAAGATCTCTTTACCGATGGCATCATCAACGAAAT
TTCTATTCCAGGTCCACGGCCAACTTTCACCACAGCAACATCAACCGTCA
CACCGAAAAACAAATGTGCTCATGCCTGCAGAGACTTATCGATACCGATT
GGCATCATGCGTTGCGCTAATTGTACAAGAGTCAATTTCACTTTAAAGGA
CCTTGGAAAACCAACTTTTACCCCCACGTTCACATGGGGTATTAAAATCA
CCAGACCTAACCAAAAAGTCATTACAAAACCAACAATAACAACAACCTTA
TCAAAGAGCTACGAAAGATTGTGCAAGGAGTGCTTACAATACTCTATGAA
ACCAAAATTATGTCATCAAGTCTGCCAAGCATGGTTAAACGCCCAAACCA
CACCAACCTTGGCACCCCGTCCTCCAGCAGTATTCAGAAACGGAAAAACT
CAACCTCGACAACCTACAGCCAAACCCTCAGAATCTGAAATCAAAGTAAC
CAGAATTACTGAAAAAGACTTAATTTCTACTTTGTTGGAATACAGAGAAC
GTGAGTTTTGGTTCGTTGCGTTCGCTTTTGGTTGCGTGATCGTCTTGCTT
CTCTTGATCGTCATCATGTTTTGCTCGCACAAACGACGCACGCACAAGAT
TGTCAAACCTCGAATGGATTTCTGCAACATCTAAGCAACTCTGCTTTTCG
TATTTATTGCCATGGTTCACAGTGGACAAGATCTCTTTACCGATGGCATC
ATCAACGAAATTTCTATTCCAGGTCCACGGCCAACTTTCACCACAGCAAC
ATCAACCGTCACACCGAAAAACAAATGTGCTCATGCCTGCAGAGACTTAT
CGATACCGATTGGCATCATGCGTTGCGCTAATTGTACAAGAGTCAATTTC
ACTTTAAAGGACCTTGGAAAACCAACTTTTACCCCCACGTTCACATGGGG
TATTAAAATCACCAGACCTAACCAAAAAGTCATTACAAAACCAACAATAA
CAACAACCTTATCAAAGAGCTACGAAAGATTGTGCAAGGAGTGCTTACAA
TACTCTATGAAACCAAAATTATGTCATCAAGTCTGCCAAGCATGGTTAAA
CGCCCAAACCACACCAACCTTGGCACCCCGTCCTCCAGCAGTATTCAGAA
ACGGAAAAACTCAACCTCGACAACCTACAGCCAAACCCTCAGAATCTGAA
ATCAAAGTAACCAGAATTACTGAAAAAGACTTAATTTCTACTTTGTTGGA
ATACAGAGAACGTGAGTTTTGGTTCGTTGCGTTCGCTTTTGGTTGCGTGA
TCGTCTTGCTTCTCTTGATCGTCATCATGTTTTGCTCGCACAAACGACGC
ACGCACAAGATTGTCAAACCTCGAATGGATTTCTGCAACATCTAAGCAAC
TCTGCTTTTCGTATTTATTGCCATGGTTCACAGTGGACAAGATCTCTTTA
CCGATGGCATCATCAACGAAATTTCTATTCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030284XLOC_030284Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047550-proteinTCONS_00047550-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047550-exon-scaffold_131-1575043694:190252..190440TCONS_00047550-exon-scaffold_131-1575043694:190252..190440Clytia hemisphaericaexon
TCONS_00047550-exon-scaffold_131-1575043694:189096..189153TCONS_00047550-exon-scaffold_131-1575043694:189096..189153Clytia hemisphaericaexon
TCONS_00047550-exon-scaffold_131-1575043694:187688..188835TCONS_00047550-exon-scaffold_131-1575043694:187688..188835Clytia hemisphaericaexon
TCONS_00047550-exon-scaffold_131-1510915933:190252..190440TCONS_00047550-exon-scaffold_131-1510915933:190252..190440Clytia hemisphaericaexon
TCONS_00047550-exon-scaffold_131-1510915933:189096..189153TCONS_00047550-exon-scaffold_131-1510915933:189096..189153Clytia hemisphaericaexon
TCONS_00047550-exon-scaffold_131-1510915933:187688..188835TCONS_00047550-exon-scaffold_131-1510915933:187688..188835Clytia hemisphaericaexon
TCONS_00047550-exon-scaffold_131-1491911889:190252..190440TCONS_00047550-exon-scaffold_131-1491911889:190252..190440Clytia hemisphaericaexon
TCONS_00047550-exon-scaffold_131-1491911889:189096..189153TCONS_00047550-exon-scaffold_131-1491911889:189096..189153Clytia hemisphaericaexon
TCONS_00047550-exon-scaffold_131-1491911889:187688..188835TCONS_00047550-exon-scaffold_131-1491911889:187688..188835Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_131supercontigscaffold_131:187688..190440 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0372364	0.0149332	0.0239798	0.0381377	0	0	1.43911	2.11074	0	6.69187e-06	0	0.00224058	0	0	0	0.974436	0	0	0.647884	0	0	0	0	0	1.31676	1.31663	0	0	0.874813	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047550 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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