TCONS_00047539 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047539
Unique NameTCONS_00047539
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1174

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047539 ID=TCONS_00047539|Name=TCONS_00047539|organism=Clytia hemisphaerica|type=transcript|length=1174bp
TGTTAATTTCTTGGTGGTTTATTTGATCAAGAAAACAGGTCAAACATCAA
ACCAATCCACTTTTTTGATTATGGTATTATCATTGAATGAGGGATGTGAA
GCGCTTTTCAATAATTCGGtttacattatttttttatgGTATTTCCGTCA
ATTAAATTGTATCGTTGGGCACGTCATGAAATTCACCTCACATCTCTTCT
CATACACGTCAAGCCTCATGATCTGTTTTATCGGTTTCGATCGATTCATG
AGAGTCGTGTTTTCCAATCGATATGATACCGTTTTCAATCGTACACGTTA
TCGAATCGTCATGGCAACAACAGCATGTTTGGTCATTGCGCaaaccattt
tgaattttgttggGCCAGTAATGATCGGCGAAGGGTGGGGCGCAATTTTA
ACAGCACCCATCAATGTCACCTTATTTACATTTACAATcatttgttattt
tgtttgtatttaTCATTTGAAGAAGTATTCTGCAACCAGCCGAAGATTGT
CTACCGAGAATAAACCACTTGTCAACATGGCATACGCATACTTGGCAGTA
TTCTTTAGCTTTCGTCTTCCCTTAATTGCTTACCTACTAACTTACTCAAT
GATTTTGAGATATGCATCAAGTCAAACTTTAGGTGTGATCACgtgtttta
ttttccttttcatgaATACAAACTCACTTTTGAACAGCGTTTTATTTCTT
TACAAAAATCGACAATCGCGACGGTTTTTGATCAACTTTTTCAACCCAGA
TGGCAATAAACGTGAAGAAGCAGCGAGAGGAAACGCGGTGAAAAAATGTC
CTGTTGTTGCTGGAGCCCCTGACGATTCACATACTAAAAGAACAGACTCC
ATCAAAATTCATCCTGCAGCTGCTGACATCGAACCATCACAAGAAACGGA
AAAGGAAAAGGAACTCACCGATGCAGATAATTCCGTCGAGGTTCTAGACG
TTAATAATAATGATTAGTTTGACACTttcctagactagtaaaccacgccg
ttgtatttcgctgcagcttACTCTTGCAATGGGCTCATTACGTTTGCTTA
ATAAAAAACACtctcaatttctattttttgtagGAAGTCTTTGAAAGCAC
TTTTCcacgcgttcctgtgtccaaggaaaggcAGTGCTAGTctaacacac
ccctgtctcagtattATTGTTTAC
Run BLAST on NCBI

protein sequence of TCONS_00047539-protein

>TCONS_00047539-protein ID=TCONS_00047539-protein|Name=TCONS_00047539-protein|organism=Clytia hemisphaerica|type=polypeptide|length=321bp
VNFLVVYLIKKTGQTSNQSTFLIMVLSLNEGCEALFNNSVYIIFLWYFRQ
LNCIVGHVMKFTSHLFSYTSSLMICFIGFDRFMRVVFSNRYDTVFNRTRY
RIVMATTACLVIAQTILNFVGPVMIGEGWGAILTAPINVTLFTFTIICYF
VCIYHLKKYSATSRRLSTENKPLVNMAYAYLAVFFSFRLPLIAYLLTYSM
ILRYASSQTLGVITCFIFLFMNTNSLLNSVLFLYKNRQSRRFLINFFNPD
GNKREEAARGNAVKKCPVVAGAPDDSHTKRTDSIKIHPAAADIEPSQETE
KEKELTDADNSVEVLDVNNND
Run BLAST on NCBI

transcript from alignment at scaffold_131:154847..157057-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047539 ID=TCONS_00047539|Name=TCONS_00047539|organism=Clytia hemisphaerica|type=transcript|length=2211bp|location=Sequence derived from alignment at scaffold_131:154847..157057- (Clytia hemisphaerica)
TGTTAATTTCTTGGTGGTTTATTTGATCAAGAAAACAGGTCAAACATCAA
ACCAATCCACTTTTTTGATTATGGTATTATCATTGAATGAGGGATGTGAA
GCGCTTTTCAATAATTCGGTTTACATTATTTTTTTATGGTAAGTTTTTCT
TTTTCACAAATTTTCTTTAATTTTTGCCTTATGTATACACAAAAAGCCGT
TGTGTAAAATCCCATGACAGCACCCTGATATGATATGCGACCAAGGGGGT
TCCGACAAAAAGGAAAACAGCCAAAATTAATNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTTTTCCTAAGAAAACGGGTGTTTTGAGTCCACAAAGCCTTGAAAT
GTTCTCAACATTTTGGCCATCGAAGCTTTATGTTCTTATAAAAAACGTGT
ATTATATTCAGTTTGCTTTAGCCAAGTAGCTGATGAAAAAGTTGCACTTT
GACTTTACACGATTTCCTTCGATAGGTATTTCCGTCAATTAAATTGTATC
GTTGGGCACGTCATGAAATTCACCTCACATCTCTTCTCATACACGTCAAG
CCTCATGATCTGTTTTATCGGTTTCGATCGATTCATGAGAGTCGTGTTTT
CCAATCGATATGATACCGTTTTCAATCGTACACGTTATCGAATCGTCATG
GCAACAACAGCATGTTTGGTCATTGCGCAAACCATTTTGAATTTTGTTGG
GCCAGTAATGATCGGCGAAGGGTGGGGCGCAATTTTAACAGCACCCATCA
ATGTCACCTTATTTACATTTACAATCATTTGTTATTTTGTTTGTATTTAT
CATTTGAAGAAGTATTCTGCAACCAGCCGAAGATTGTCTACCGAGAATAA
ACCACTTGTCAACATGGCATACGCATACTTGGCAGTATTCTTTAGCTTTC
GTCTTCCCTTAATTGCTTACCTACTAACTTACTCAATGATTTTGAGATAT
GCATCAAGTCAAACTTTAGGTGTGATCACGTGTTTTATTTTCCTTTTCAT
GAATACAAACTCACTTTTGAACAGCGTTTTATTTCTTTACAAAAATCGAC
AATCGCGACGGTTTTTGATCAACTTTTTCAACCCAGATGGCAATAAACGT
GAAGAAGCAGCGAGAGGAAACGCGGTGAAAAAATGTCCTGTTGTTGCTGG
AGCCCCTGACGATTCACATACTAAAAGAACAGACTCCATCAAAATTCATC
CTGCAGCTGCTGACATCGAACCATCACAAGAAACGGAAAAGGAAAAGGAA
CTCACCGATGCAGATAATTCCGTCGAGGTTCTAGACGTTAATAATAATGA
TTAGTTTGACACTTTCCTAGACTAGTAAACCACGCCGTTGTATTTCGCTG
CAGCTTACTCTTGCAATGGGCTCATTACGTTTGCTTAATAAAAAACACTC
TCAATTTCTATTTTTTGTAGGAAGTCTTTGAAAGCACTTTTCCACGCGTT
CCTGTGTCCAAGGAAAGGCAGTGCTAGTCTAACACACCCCTGTCTCAGTA
TTATTGTTTAC

Coding sequence (CDS) from alignment at scaffold_131:154847..157057-

>TCONS_00047539 ID=TCONS_00047539|Name=TCONS_00047539|organism=Clytia hemisphaerica|type=CDS|length=1932bp|location=Sequence derived from alignment at scaffold_131:154847..157057- (Clytia hemisphaerica)
GTATTTCCGTCAATTAAATTGTATCGTTGGGCACGTCATGAAATTCACCT
CACATCTCTTCTCATACACGTCAAGCCTCATGATCTGTTTTATCGGTTTC
GATCGATTCATGAGAGTCGTGTTTTCCAATCGATATGATACCGTTTTCAA
TCGTACACGTTATCGAATCGTCATGGCAACAACAGCATGTTTGGTCATTG
CGCAAACCATTTTGAATTTTGTTGGGCCAGTAATGATCGGCGAAGGGTGG
GGCGCAATTTTAACAGCACCCATCAATGTCACCTTATTTACATTTACAAT
CATTTGTTATTTTGTTTGTATTTATCATTTGAAGAAGTATTCTGCAACCA
GCCGAAGATTGTCTACCGAGAATAAACCACTTGTCAACATGGCATACGCA
TACTTGGCAGTATTCTTTAGCTTTCGTCTTCCCTTAATTGCTTACCTACT
AACTTACTCAATGATTTTGAGATATGCATCAAGTCAAACTTTAGGTGTGA
TCACGTGTTTTATTTTCCTTTTCATGAATACAAACTCACTTTTGAACAGC
GTTTTATTTCTTTACAAAAATCGACAATCGCGACGGTTTTTGATCAACTT
TTTCAACCCAGATGGCAATAAACGTGAAGAAGCAGCGAGAGGAAACGCGG
TGAAAAAATGTCCTGTTGTTGCTGGAGCCCCTGACGATTCACATACTAAA
AGAACAGACTCCATCAAAATTCATCCTGCAGCTGCTGACATCGAACCATC
ACAAGAAACGGAAAAGGAAAAGGAACTCACCGATGCAGATAATTCCGTCG
AGGTTCTAGACGTTAATAATAATGATTAGGTTAATTTCTTGGTGGTTTAT
TTGATCAAGAAAACAGGTCAAACATCAAACCAATCCACTTTTTTGATTAT
GGTATTATCATTGAATGAGGGATGTGAAGCGCTTTTCAATAATTCGGTTT
ACATTATTTTTTTATGGTATTTCCGTCAATTAAATTGTATCGTTGGGCAC
GTCATGAAATTCACCTCACATCTCTTCTCATACACGTCAAGCCTCATGAT
CTGTTTTATCGGTTTCGATCGATTCATGAGAGTCGTGTTTTCCAATCGAT
ATGATACCGTTTTCAATCGTACACGTTATCGAATCGTCATGGCAACAACA
GCATGTTTGGTCATTGCGCAAACCATTTTGAATTTTGTTGGGCCAGTAAT
GATCGGCGAAGGGTGGGGCGCAATTTTAACAGCACCCATCAATGTCACCT
TATTTACATTTACAATCATTTGTTATTTTGTTTGTATTTATCATTTGAAG
AAGTATTCTGCAACCAGCCGAAGATTGTCTACCGAGAATAAACCACTTGT
CAACATGGCATACGCATACTTGGCAGTATTCTTTAGCTTTCGTCTTCCCT
TAATTGCTTACCTACTAACTTACTCAATGATTTTGAGATATGCATCAAGT
CAAACTTTAGGTGTGATCACGTGTTTTATTTTCCTTTTCATGAATACAAA
CTCACTTTTGAACAGCGTTTTATTTCTTTACAAAAATCGACAATCGCGAC
GGTTTTTGATCAACTTTTTCAACCCAGATGGCAATAAACGTGAAGAAGCA
GCGAGAGGAAACGCGGTGAAAAAATGTCCTGTTGTTGCTGGAGCCCCTGA
CGATTCACATACTAAAAGAACAGACTCCATCAAAATTCATCCTGCAGCTG
CTGACATCGAACCATCACAAGAAACGGAAAAGGAAAAGGAACTCACCGAT
GCAGATAATTCCGTCGAGGTTCTAGACGTTAATAATAATGATTAGGTTAA
TTTCTTGGTGGTTTATTTGATCAAGAAAACAGGTCAAACATCAAACCAAT
CCACTTTTTTGATTATGGTATTATCATTGAATGAGGGATGTGAAGCGCTT
TTCAATAATTCGGTTTACATTATTTTTTTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030282XLOC_030282Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047539-proteinTCONS_00047539-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047539-exon-scaffold_131-1575043694:156920..157057TCONS_00047539-exon-scaffold_131-1575043694:156920..157057Clytia hemisphaericaexon
TCONS_00047539-exon-scaffold_131-1575043694:154847..155882TCONS_00047539-exon-scaffold_131-1575043694:154847..155882Clytia hemisphaericaexon
TCONS_00047539-exon-scaffold_131-1510915933:156920..157057TCONS_00047539-exon-scaffold_131-1510915933:156920..157057Clytia hemisphaericaexon
TCONS_00047539-exon-scaffold_131-1510915933:154847..155882TCONS_00047539-exon-scaffold_131-1510915933:154847..155882Clytia hemisphaericaexon
TCONS_00047539-exon-scaffold_131-1491911889:156920..157057TCONS_00047539-exon-scaffold_131-1491911889:156920..157057Clytia hemisphaericaexon
TCONS_00047539-exon-scaffold_131-1491911889:154847..155882TCONS_00047539-exon-scaffold_131-1491911889:154847..155882Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_131supercontigscaffold_131:154847..157057 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0358512	0	0.0407252	0.148737	0.078356	0.803532	0.663756	0.526673	0.383746	0.670453	0.416244	0.0244509	0	0.0208761	0	0.0551979	0.0565761	0	0	0.071092	0.208057	0	0.0766472	0	0.0352282	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047539 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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