TCONS_00047538 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047538
Unique NameTCONS_00047538
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1384

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047538 ID=TCONS_00047538|Name=TCONS_00047538|organism=Clytia hemisphaerica|type=transcript|length=1384bp
AAAATGTTCGTTTATGTCAGtgtaatttgaatttgaatattttactTTAT
TCCTAAATTTCATTTCAgcgaaaaagtctaaaaataaagaaatatttccA
AAGGTTGTGTTGTGGTTGTGGTTGTGCGTTTTCGAGATATCATGGACGTG
GCAGTAATTGGAGGAGGTATATGTGGTCTATCAAGCGCTTACCAAGCTCT
CAGTGAGAAATCATTGAACATCAAACAACTCCATATTTATGCTGATAAAT
ATCAATCCCAAACCACAAGCAGCGGAGCGGCTGGACTGTGGAGAGCGGCC
AATGTGCACAACACACCTCGAGAAAAATTGAACCGATGGGGAAAGGATTC
ACTAGATCACGCCATACAAGTATTGTCTTTCGATCCTGACTCAGCAGAAA
AAGGTTTCGCACCGGCACATGGTTTCTTATTGAGCCGTAAGCCTATCCCT
GATGTGCAATGGGCTCACTTCGGCATCTCTTTTGTTATCATGAATGAGCA
GGACATACGCCGGCGCTTCCCGAATATCGATCCCGATATCAAATATGGCG
TTTCTTTCTCCTCGTACACCTTAGAAAGTCGTCGCTTTCTCTCATACACG
ACCATAGAGATCGAAAAGTTAGGTGGAaagtttttcaaccaaaaaatcaa
atctttGTCCAAGTTATCAgataaatatgacgtcatcattaatTGTTGTG
GACTGGGCGCGAGTGAATTGGTCGGTGATGACAAGATGATTCCTACACGT
GGTCAAATCATGTATGTGAAAGCACCATGGATCAAAGAATTCGTATATGA
TATCGATGTTGTAGATGGGAATGTTCCTTACATTATACCGAACATCGACC
GTTGCATTCTGGGAGGTACAAAGCAACAATTCAACTCGTCCCTAGAGCCA
ACTGATTATGATCGCAACTGGATTTTGGAAAATACGAAGAAATTAGTCCC
AAGTGTCGAAAAAGCGGAAATCATCGAAGATTGGGTTGGAATCCGACCGG
GTAGAGATGAAATCCGTTTAGAATGCGAAATAATTAAGGCCCCTACCACA
AACGACCCTAAACGGACCATCCCGGTCATTCATAATTACGGACACGGAGC
AAACGGAATTAGTTTGAGTTGGGGATGTGCTGTGAATGTAATTGAAATAA
TGAAAGAACGATGTGGTGCTAAGTCGTCTTTGTGAGTATTCTTGAGTATA
TCGCAGAGTTTTATCAAGGTGATAAATACATTTAATGAATTTGGAAAAGT
AGATTTCACACAAGCATAAGTAGAGGTTTTAGATCTCGTTTAGTTTATGG
TAATGGTAAATCTCCCACAAATGTAGTATTTGGATGGAGAAAGCGTTatt
attcttgaaaaaattggtAAATATTAGATCATTT
Run BLAST on NCBI

protein sequence of TCONS_00047538-protein

>TCONS_00047538-protein ID=TCONS_00047538-protein|Name=TCONS_00047538-protein|organism=Clytia hemisphaerica|type=polypeptide|length=347bp
MDVAVIGGGICGLSSAYQALSEKSLNIKQLHIYADKYQSQTTSSGAAGLW
RAANVHNTPREKLNRWGKDSLDHAIQVLSFDPDSAEKGFAPAHGFLLSRK
PIPDVQWAHFGISFVIMNEQDIRRRFPNIDPDIKYGVSFSSYTLESRRFL
SYTTIEIEKLGGKFFNQKIKSLSKLSDKYDVIINCCGLGASELVGDDKMI
PTRGQIMYVKAPWIKEFVYDIDVVDGNVPYIIPNIDRCILGGTKQQFNSS
LEPTDYDRNWILENTKKLVPSVEKAEIIEDWVGIRPGRDEIRLECEIIKA
PTTNDPKRTIPVIHNYGHGANGISLSWGCAVNVIEIMKERCGAKSSL
Run BLAST on NCBI

transcript from alignment at scaffold_131:127770..129688-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047538 ID=TCONS_00047538|Name=TCONS_00047538|organism=Clytia hemisphaerica|type=transcript|length=1919bp|location=Sequence derived from alignment at scaffold_131:127770..129688- (Clytia hemisphaerica)
AAAATGTTCGTTTATGTCAGTGTAATTTGAATTTGAATATTTTACTTTAT
TCCTAAATTTCATTTCAGCGAAAAAGTCTAAAAATAAAGAAATATTTCCA
AAGGTTGTGTTGTGGTTGTGGTTGTGCGTTTTCGAGATATCATGGTGATT
GGTTTAGTTTCTACGATTATTTTATTCCTTATTTTCTCTTGCAAGCCAGT
AAGGTCAATTTTAAGTGAATGTACCTTCATGTCGGTCAACCATGCCATGG
GAGGAGAATCTAGACCCATTACACTGATTTACGCGTTTGTAAAGATACAC
TTTTTTTTATATAAGGAACACGTTTATAAGGAACTCGAGGCTGAAAATGG
TCCAAAAAATAAGGAATTGTTTAGGAACTGCTCAGGCTGAGAATAAGAAA
ACAAGTTTTAAGGAACGGTAAGAGATGGTTATCCAAACTTAGCAGCTATG
TAAATAAGGAAGTCGATAAGGAACTTTGAGGCTGAAATTCTCTGTAAAAA
TAAAGAACTCCAGACTCAGAGCAAAGTTAAGGTTCCTTATTAAAAAAAAC
GTGTATGAGGCTTTGTCAGTCTCCCTTGAGCATTTACTCTCATACCGTCG
TTCGAGTAAGTAATAAAAGCGGCCGGCTTATTTACTACCTTTAAGCTCTG
TTTAAACATTATCATCTCAACTTTTTCAGGACGTGGCAGTAATTGGAGGA
GGTATATGTGGTCTATCAAGCGCTTACCAAGCTCTCAGTGAGAAATCATT
GAACATCAAACAACTCCATATTTATGCTGATAAATATCAATCCCAAACCA
CAAGCAGCGGAGCGGCTGGACTGTGGAGAGCGGCCAATGTGCACAACACA
CCTCGAGAAAAATTGAACCGATGGGGAAAGGATTCACTAGATCACGCCAT
ACAAGTATTGTCTTTCGATCCTGACTCAGCAGAAAAAGGTTTCGCACCGG
CACATGGTTTCTTATTGAGCCGTAAGCCTATCCCTGATGTGCAATGGGCT
CACTTCGGCATCTCTTTTGTTATCATGAATGAGCAGGACATACGCCGGCG
CTTCCCGAATATCGATCCCGATATCAAATATGGCGTTTCTTTCTCCTCGT
ACACCTTAGAAAGTCGTCGCTTTCTCTCATACACGACCATAGAGATCGAA
AAGTTAGGTGGAAAGTTTTTCAACCAAAAAATCAAATCTTTGTCCAAGTT
ATCAGATAAATATGACGTCATCATTAATTGTTGTGGACTGGGCGCGAGTG
AATTGGTCGGTGATGACAAGATGATTCCTACACGTGGTCAAATCATGTAT
GTGAAAGCACCATGGATCAAAGAATTCGTATATGATATCGATGTTGTAGA
TGGGAATGTTCCTTACATTATACCGAACATCGACCGTTGCATTCTGGGAG
GTACAAAGCAACAATTCAACTCGTCCCTAGAGCCAACTGATTATGATCGC
AACTGGATTTTGGAAAATACGAAGAAATTAGTCCCAAGTGTCGAAAAAGC
GGAAATCATCGAAGATTGGGTTGGAATCCGACCGGGTAGAGATGAAATCC
GTTTAGAATGCGAAATAATTAAGGCCCCTACCACAAACGACCCTAAACGG
ACCATCCCGGTCATTCATAATTACGGACACGGAGCAAACGGAATTAGTTT
GAGTTGGGGATGTGCTGTGAATGTAATTGAAATAATGAAAGAACGATGTG
GTGCTAAGTCGTCTTTGTGAGTATTCTTGAGTATATCGCAGAGTTTTATC
AAGGTGATAAATACATTTAATGAATTTGGAAAAGTAGATTTCACACAAGC
ATAAGTAGAGGTTTTAGATCTCGTTTAGTTTATGGTAATGGTAAATCTCC
CACAAATGTAGTATTTGGATGGAGAAAGCGTTATTATTCTTGAAAAAATT
GGTAAATATTAGATCATTT

Coding sequence (CDS) from alignment at scaffold_131:127770..129688-

>TCONS_00047538 ID=TCONS_00047538|Name=TCONS_00047538|organism=Clytia hemisphaerica|type=CDS|length=2088bp|location=Sequence derived from alignment at scaffold_131:127770..129688- (Clytia hemisphaerica)
GACGTGGCAGTAATTGGAGGAGGTATATGTGGTCTATCAAGCGCTTACCA
AGCTCTCAGTGAGAAATCATTGAACATCAAACAACTCCATATTTATGCTG
ATAAATATCAATCCCAAACCACAAGCAGCGGAGCGGCTGGACTGTGGAGA
GCGGCCAATGTGCACAACACACCTCGAGAAAAATTGAACCGATGGGGAAA
GGATTCACTAGATCACGCCATACAAGTATTGTCTTTCGATCCTGACTCAG
CAGAAAAAGGTTTCGCACCGGCACATGGTTTCTTATTGAGCCGTAAGCCT
ATCCCTGATGTGCAATGGGCTCACTTCGGCATCTCTTTTGTTATCATGAA
TGAGCAGGACATACGCCGGCGCTTCCCGAATATCGATCCCGATATCAAAT
ATGGCGTTTCTTTCTCCTCGTACACCTTAGAAAGTCGTCGCTTTCTCTCA
TACACGACCATAGAGATCGAAAAGTTAGGTGGAAAGTTTTTCAACCAAAA
AATCAAATCTTTGTCCAAGTTATCAGATAAATATGACGTCATCATTAATT
GTTGTGGACTGGGCGCGAGTGAATTGGTCGGTGATGACAAGATGATTCCT
ACACGTGGTCAAATCATGTATGTGAAAGCACCATGGATCAAAGAATTCGT
ATATGATATCGATGTTGTAGATGGGAATGTTCCTTACATTATACCGAACA
TCGACCGTTGCATTCTGGGAGGTACAAAGCAACAATTCAACTCGTCCCTA
GAGCCAACTGATTATGATCGCAACTGGATTTTGGAAAATACGAAGAAATT
AGTCCCAAGTGTCGAAAAAGCGGAAATCATCGAAGATTGGGTTGGAATCC
GACCGGGTAGAGATGAAATCCGTTTAGAATGCGAAATAATTAAGGCCCCT
ACCACAAACGACCCTAAACGGACCATCCCGGTCATTCATAATTACGGACA
CGGAGCAAACGGAATTAGTTTGAGTTGGGGATGTGCTGTGAATGTAATTG
AAATAATGAAAGAACGATGTGGTGCTAAGTCGTCTTTGTGAATGGACGTG
GCAGTAATTGGAGGAGGTATATGTGGTCTATCAAGCGCTTACCAAGCTCT
CAGTGAGAAATCATTGAACATCAAACAACTCCATATTTATGCTGATAAAT
ATCAATCCCAAACCACAAGCAGCGGAGCGGCTGGACTGTGGAGAGCGGCC
AATGTGCACAACACACCTCGAGAAAAATTGAACCGATGGGGAAAGGATTC
ACTAGATCACGCCATACAAGTATTGTCTTTCGATCCTGACTCAGCAGAAA
AAGGTTTCGCACCGGCACATGGTTTCTTATTGAGCCGTAAGCCTATCCCT
GATGTGCAATGGGCTCACTTCGGCATCTCTTTTGTTATCATGAATGAGCA
GGACATACGCCGGCGCTTCCCGAATATCGATCCCGATATCAAATATGGCG
TTTCTTTCTCCTCGTACACCTTAGAAAGTCGTCGCTTTCTCTCATACACG
ACCATAGAGATCGAAAAGTTAGGTGGAAAGTTTTTCAACCAAAAAATCAA
ATCTTTGTCCAAGTTATCAGATAAATATGACGTCATCATTAATTGTTGTG
GACTGGGCGCGAGTGAATTGGTCGGTGATGACAAGATGATTCCTACACGT
GGTCAAATCATGTATGTGAAAGCACCATGGATCAAAGAATTCGTATATGA
TATCGATGTTGTAGATGGGAATGTTCCTTACATTATACCGAACATCGACC
GTTGCATTCTGGGAGGTACAAAGCAACAATTCAACTCGTCCCTAGAGCCA
ACTGATTATGATCGCAACTGGATTTTGGAAAATACGAAGAAATTAGTCCC
AAGTGTCGAAAAAGCGGAAATCATCGAAGATTGGGTTGGAATCCGACCGG
GTAGAGATGAAATCCGTTTAGAATGCGAAATAATTAAGGCCCCTACCACA
AACGACCCTAAACGGACCATCCCGGTCATTCATAATTACGGACACGGAGC
AAACGGAATTAGTTTGAGTTGGGGATGTGCTGTGAATGTAATTGAAATAA
TGAAAGAACGATGTGGTGCTAAGTCGTCTTTGTGAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030281XLOC_030281Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047538-proteinTCONS_00047538-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047538-exon-scaffold_131-1575043694:129545..129688TCONS_00047538-exon-scaffold_131-1575043694:129545..129688Clytia hemisphaericaexon
TCONS_00047538-exon-scaffold_131-1575043694:127770..129009TCONS_00047538-exon-scaffold_131-1575043694:127770..129009Clytia hemisphaericaexon
TCONS_00047538-exon-scaffold_131-1510915933:129545..129688TCONS_00047538-exon-scaffold_131-1510915933:129545..129688Clytia hemisphaericaexon
TCONS_00047538-exon-scaffold_131-1510915933:127770..129009TCONS_00047538-exon-scaffold_131-1510915933:127770..129009Clytia hemisphaericaexon
TCONS_00047538-exon-scaffold_131-1491911889:129545..129688TCONS_00047538-exon-scaffold_131-1491911889:129545..129688Clytia hemisphaericaexon
TCONS_00047538-exon-scaffold_131-1491911889:127770..129009TCONS_00047538-exon-scaffold_131-1491911889:127770..129009Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_131supercontigscaffold_131:127770..129688 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.150969	0.0883312	0.068374	0.20068	1.79159	1.7392	8.89158	10.0303	8.74235	5.82523	13.0432	8.06603	16.1382	16.245	18.1071	25.0474	3.31515	3.06667	5.08395	3.70731	3.19111	3.38899	4.42103	3.88377	5.96487	4.71593	0.621026	0.795331	3.37437	2.47992
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR023753FAD/NAD-binding_dom
IPR006076FAD-dep_OxRdtase
IPR023209DAO
IPR006181D-amino_acid_oxidase_CS
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0046416D-amino acid metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO:0003884D-amino-acid oxidase activity
GO:0071949FAD binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0046416 D-amino acid metabolic process
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0003884 D-amino-acid oxidase activity
molecular_function GO:0071949 FAD binding
molecular_function GO:0016491 oxidoreductase activity
Blast
[Close]
BLAST of TCONS_00047538 vs. Swiss-Prot (Human)
Match: OXDA (D-amino-acid oxidase OS=Homo sapiens GN=DAO PE=1 SV=3)

HSP 1 Score: 184.882 bits (468), Expect = 2.943e-53
Identity = 118/344 (34.30%), Postives = 181/344 (52.62%), Query Frame = 1 
Query:  142 MDVAVIGGGICGLSSAYQALSEKSLNIKQ---LHIYADKYQSQTTSSGAAGLWRA-ANVHNTPREKLNRWGKDSLDHAIQVLSFDPDSAEKGFAPAHGFLLSRKPIPDVQWAHFGISFVIMNEQDIRRRFPNIDPDIKYGVSFSSYTLESRRFLSYTTIEIEKLGGKFFNQKIKSLSKLS-DKYDVIINCCGLGASELVGDDKMIPTRGQIMYVKAPWIKEFVYDIDVVDG--NVPYIIPNIDRCILGGTKQQFNSSLEPTDYDRNWILENTKKLVPSVEKAEIIEDWVGIRPGRDEIRLECEIIKAPTTNDPKRTIPVIHNYGHGANGISLSWGCAVNVIEIM 1152
            M V VIG G+ GLS+A   + E+  ++ Q   + +YAD++   TT+  AAGLW+   +  N P+E    W + + D+ +  +   P++   G     G+ L  + IPD  W    + F  +  +++     ++ PD  YG   +S  LE + +L + T  + + G KFF +K++S  +++ +  DVI+NC G+ A  L  D  + P RGQIM V APW+K F+   D   G  N PYIIP      LGG  Q  N S      D N I E   +L P+++ A II +  G RP R +IRLE E ++   +N       VIHNYGHG  G+++ WGCA+   ++ 
Sbjct:    1 MRVVVIGAGVIGLSTAL-CIHERYHSVLQPLDIKVYADRFTPLTTTDVAAGLWQPYLSDPNNPQEA--DWSQQTFDYLLSHVH-SPNAENLGLFLISGYNLFHEAIPDPSWKDTVLGFRKLTPREL-----DMFPDYGYGWFHTSLILEGKNYLQWLTERLTERGVKFFQRKVESFEEVAREGADVIVNCTGVWAGALQRDPLLQPGRGQIMKVDAPWMKHFILTHDPERGIYNSPYIIPGTQTVTLGGIFQLGNWSELNNIQDHNTIWEGCCRLEPTLKNARIIGERTGFRPVRPQIRLEREQLRTGPSN-----TEVIHNYGHGGYGLTIHWGCALEAAKLF 330
The following BLAST results are available for this feature:
BLAST of TCONS_00047538 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
OXDA2.943e-5334.30D-amino-acid oxidase OS=Homo sapiens GN=DAO PE=1 S... [more]
back to top