TCONS_00047533 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047533
Unique NameTCONS_00047533
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length108

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047533 ID=TCONS_00047533|Name=TCONS_00047533|organism=Clytia hemisphaerica|type=transcript|length=108bp
GGAAAAACGGATCAAATGAAGCGAGACGTTTTGTCAATATCACAATCATT
GCGGACTGCTTTCACTAAACTCAAGAAGTGTCCGAGACAACTTACCGATT
GTTACCAT
Run BLAST on NCBI

transcript from alignment at scaffold_131:72133..72489-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047533 ID=TCONS_00047533|Name=TCONS_00047533|organism=Clytia hemisphaerica|type=transcript|length=357bp|location=Sequence derived from alignment at scaffold_131:72133..72489- (Clytia hemisphaerica)
GGAAAAACGGATCAAATGAAGCGAGACGTTTTGTCAATATCACAATCATT
GCGGACTGCTTTCACTAAACTCAAGAAGTGTCCGAGACAACGTAAGTTAC
ATTATTATATGAAACAATTATCTCGTCTATGTTGGAATCTAGATTGTTTT
TTGTGCTTCTCATCAATTAGTGTGCGTTGTATCTTGTCACCGTAACTTCG
GCAGTTTTATCTACCGACCTTCTTGAGTTTGAGCGACTGTCAATTTGTCT
AAAGTTTGAAGCTTAAAAAAATATACAGTACCATGGATCTTCTAACGGCC
ATATGAATGATAGTATTTTTAATTGTTCTTCTTTATTTAGTTACCGATTG
TTACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030277XLOC_030277Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047533-exon-scaffold_131-1575043694:72399..72489TCONS_00047533-exon-scaffold_131-1575043694:72399..72489Clytia hemisphaericaexon
TCONS_00047533-exon-scaffold_131-1575043694:72133..72149TCONS_00047533-exon-scaffold_131-1575043694:72133..72149Clytia hemisphaericaexon
TCONS_00047533-exon-scaffold_131-1510915933:72399..72489TCONS_00047533-exon-scaffold_131-1510915933:72399..72489Clytia hemisphaericaexon
TCONS_00047533-exon-scaffold_131-1510915933:72133..72149TCONS_00047533-exon-scaffold_131-1510915933:72133..72149Clytia hemisphaericaexon
TCONS_00047533-exon-scaffold_131-1491911889:72399..72489TCONS_00047533-exon-scaffold_131-1491911889:72399..72489Clytia hemisphaericaexon
TCONS_00047533-exon-scaffold_131-1491911889:72133..72149TCONS_00047533-exon-scaffold_131-1491911889:72133..72149Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_131supercontigscaffold_131:72133..72489 -
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047533 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top