TCONS_00047530 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047530
Unique NameTCONS_00047530
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1840

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047530 ID=TCONS_00047530|Name=TCONS_00047530|organism=Clytia hemisphaerica|type=transcript|length=1840bp
CAGTACATTTATCGTTTACCGTACAATTAGGAATTAAAAAGGTGACGTAA
TCCTCACAATCAACGCGCTGTGATTGGCTGATCTACCAATACATACAGAC
GAAGAAAATGGCGAACTGAAAGTTTCTGTTCTGTCAAGgaacaacaaaaa
aagaaatcacacgGTATATACTTGTAGAGACGAATCCTTACACCACTCGA
ATCTACCAAAGATACGAGTAAAGCGAGTTGGCAGCATCCTTGCGACCCTC
AGACGATGTAATGATGTGGTATCCCCAGCAATGGCCGTGACTCGGACAGA
ACCAAAGGAAAAGgtATTGTGTTGGTGATGCTGGCATCTGTGGTCAATAC
GTGAAGAACTTTCGCCAATGAACCGCGTTCAAGTGGATGCACTGATTGGA
CAAACAATTTGTTGACTACATCAACGATCACTTTGTCTTTGCAATCATGT
TTGACCATTTCAAGATGTTCATCGATCTTTTCTTGATCAAGCTTGTTCTT
CCCCATCACATGGTTTGCCAACTCTGAGACTGCCTTGTTGACATCAGCTC
GTTTACCGGTCGTGTTGTTGTTATTGATGAAGGTGCGTCCGTACCTTCGT
GTgagcgttttgattggttcaCCTTCTGCCGTCTCGATCGGAACCACGTC
AGACTGTTTCAATGTGATTCCTATTTTGGTACCGTCTGCAGCCAAGCATT
TTAGTTTGTCGCCGCAACCGAAACATTTTTTCCTGAAGTTGATTTTCATA
GATGATGCCCAGGAAAACCACCACTTGATGAACGTGTTTCTCGACATGaa
agtcttttttgattttgcacGTTTGTATTTTCGTTTGTAGAACTTTACAA
AACCGGAAAATGTTTGGCGACTGGTCATAACCAAATCCACGAATTCCCAC
CCCATTTCCCAACTGCAGGCTACACTCGGGGATGAGCGATAAATACAATC
TTCGAAACCATATTTTCGAATGCACGATCCTTTGATGCACCTTCGCTTGA
ATATTTTGGCATCAACAGCACCAGCTGAGGTATAAAGCGTGGTTTCGCCA
TCAGGAATCAAATGACCATCGGGAATATCTTCAGTGAACCATACACCCTG
AACGAAAGGAAAACAAACTTTATGGTAGTactaaattacagtataatTGC
AAATGACTTTGGAGTTGCATGAATTTATTCCGGTTCTTCTGCTCAAACAA
GATGTCATTGTGTCATTATGTCATTAAACTTCGATATACCGAATTACGAA
CAAACTATGGTCAGAAGTTGAACTTTCTGTTCTTCtatttttgtcattat
ttttaaaatttcaaatcattaaattttttgaatttgaattttctcaaata
ataAAACATTATTATCCAGTTTTAAAAGTGGTGGTCATACCTCACATTCA
CACGAGCCTGTCTTGTCAGGTATTAATTGTATATCTTCccgtttgaaaat
tttcagtgaaaattcctcAACCTTTGACATCAACGTTTCGTAAAAGGGAT
CTTGATCGACTGATTGTTTGCTTGTAGCGCAATTGTGAAACTGCCACTGC
TTGAGCTCCTCGTCAAACACCTTTTCATTTGGTTTCTATGAGACAATTGT
TATTTAAGAGCATTAAATTATTcactatttttttatatatcgATACCAGG
GGGGGTCCACTTTCAAAAATGGTAGTGTGTATTTGTATATGATTCCTAGG
ATATAAACTTGTTTGTAAATCtcatttttgctaaaataggcgttagaaat
taaatttgttgttctatggCCAGATCgtaatatgggtcggtcggtataat
aaaaataaatatttcgaAATTTAGGGTCgacaaagtgcaa
Run BLAST on NCBI

transcript from alignment at scaffold_131:33709..45608-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047530 ID=TCONS_00047530|Name=TCONS_00047530|organism=Clytia hemisphaerica|type=transcript|length=11900bp|location=Sequence derived from alignment at scaffold_131:33709..45608- (Clytia hemisphaerica)
CAGTACATTTATCGTTTACCGTACAATTAGGAATTAAAAAGGTGACGTAA
TCCTCACAATCAACGCGCTGTGATTGGCTGATCTACCAATACATACAGAC
GAAGAAAATGGCGAACTGAAAGTTTCTGTTCTGTCAAGGAACAACAAAAA
AAGAAATCACACGGTATATACTTGTAGAGACGAATCCTTACACCACTCGA
ATCTACCAAAGGTAAAAGATGTACTTCATACATGTGCTTTGAATATATTT
ACCCCCTCTTATTTTTTCCAAAAACTAGCGTTAATCACCTTGAACCACCA
CCAAAAAAGTCAAAAAAGTACTAAACAAATAGACCTTTTTTTAAAGAGGC
AGCCATGTTGAATCATTATATACTCCAGCATAAAAACAATGATACAGCCA
TGCATAATTACTGTATCATGCATATTTTAAAAATTATGCATGGCTGTATC
ATTTTTTTATGCTGGAGTACATTTCTATTTCTATTTGGTTGAGTTGCATG
AGACTTTAGAGGCCTATTATTGCAACTTTAGAGGCTTACTAATTAATGAG
CGCCCCGTCAGCACCTTGAACTGACTACCCAATTCCCTTCACATGGCATG
GGTTGACCCGGGCGAAGGAACGTTCACTTGCCAAGTGAACTGCCATGACT
CATGAGTGGGAATCGAACCCCGCTGGCCTCCTGCACTGAAGCCAAGGTTG
ACTACCACGATGACACCACAACATAATTATTCAACATGGCTGCCTCTTTA
AAAAAGGAGATTTTTCTGATTCCTCAGAGCGCGACGAGCAATTTTTTTCC
CTGATAATTTTTCCTATCCGTCATTCCGTGATTCAGGGGCTATTGGGGAG
GTAGGGTCAGGGTTGCTTGCTAGTAACAGCTTGTCACTGTGCCGGGTGCA
TACTCGGCCCCTTGGGCCCCGCAGGGTTGCTAGTAACGGCTCGAATTTCA
GTCAGGTTTAAAAAGGGTTAATTTTACCCATATTATAATAACATTACCCC
CCTCTTTTGCCAGTTCGGTATAATGTGTTATGAATTGCGTGATTTTGCTG
TGCGGCGATGGCTCAACGGATAGAACGCTGGCTTCCAAATCTGAAGGTCT
TTCTTTGGTGGTGGTTCGAATCCCACTCGGTTCGAAAATTAGACTGGTCG
AAATTGATGGACAAATGATTGACAGGTATGAAAACTCAGTCAGAAATGAG
AAAGTAAGTCTCAGAAAGTAGAATAAACAGGTAAGGTGAAAGATAGGAAA
GGGAAAATGGGCCGTCACGCTCTGTGCATTTAGCGAAATGTAAAAAAAGG
TCTATTCATTCAAAAATTTGTTGTCAGTTATAGATTAGAACGATTAGAAG
AACACAGGGCTTTCGTGGTTTGGGTGTTTGATCCTTTCAGGGAAAGTTTG
AGCTCAGGGATAAAAGGTGCTTCTCATCACCATTGATGCCACACAGCCTT
TCTTTATCCAGGCGGTGTCGGGCTCGATAGGATTGATAATTGGAACGGAT
CAATGAAGGATCAATAAAGGATCGATAAATTACTTATTGATTCCGATAAA
GGATCAAGTAGGGATGGATACCAGATCAATACTCAAGAATTTTTTGGTCA
GGATCATTTATCGATTACTTATCGATCTTACATTGATCCAATCAAATTAT
CGATTGTAAAATTATATCTATTACTTATTGATCTTATCGATCCAATCAAA
CAATCGATTCTAAAATATATCGATCCAATTGATATCGATCTCTTATCGAT
CTGAAAAATATATTGGTAGCGACAAAAGAGCATGAGTCTGCTAATGTCAC
CCATTTTCGGTTTTGTTAACTTTTCAACTTTAAGGCTCCAGTGAAAAATC
TAGGTGCATGCAATAATGATACCAGNNNNNNNNNNNNNNNNNNNNNNNNN
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CAGTTTGATTAAGCCCTGATACTTATGTTTTCTGAAAATTGAAGTCATTA
ATAAAAGAATTATCTAGGAATAAAAGTGAAATTCAAAACTTTTATTTTTT
CCAAATTTTTTCACCTATTTGGGTGACATTACCAGACTCATGCTCAAAAG
CAGAATTTTCCGGGTACTTTAGCGGATAATAAGGACTTTCCAAATTTCCA
TTGGGTGAGAATACACCTTTCCCGTAATTCAAAGTTCTCAGAAATGGTCC
GGGAAAATGTGCGCTCCACTGTTGTGTATAAAATTGTTTGGGAGGTAAAA
AACGTGTTTTTGCCTGCGAGGGGTTAGGGAAAGTGGGATTTCAGCCTCTA
ACATACCTCTTTTGTACCTCTTTTTGGCTTTTGCTTGAACAGCTCATCCA
ACTCGTTGAGTCCGATGCTTCGACATTTCCTTGAGACTGTTGGAGTCAGC
TTGCCTAAGGTTAAAATAGTGGGCGAGCAGAGGTTCGTCCGGAACAGTTG
TGTGGAAGGTGTCTAAGTGTTTTTTGAATACTTCTTTGGGGCAGTTTGTC
AAATCTCTTATTGGTCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNACGTTGCTGTGTCGGTAAAATAGCGAGAACTTTGCTTCAGA
GCGTCGTTTTTCCCATAGGCAAGGTGCTCAAATTTAAGACCATTCAGCTG
CATGTTGACATTTGACATTTGACAGCGATCTTCTTTTGACAAAATATTTT
CAGGGTGGTATAATATCATGAATAGATTGAACATACTTAAATTTGATGGA
ATTTTGTTCGACAGAACTTAAGAAAAGCTAAAAAAAACAACTTTCCCTAA
GGGAACGCAGGCAAAAAGGGGTTTGTTTACCTCCAGAGACCAAAGGGTGG
AGAGCATCAAAATAATGCGCGCGCATTAGTTTTACGAATTACTGGAAAGG
TGTATTTCGTTATCTGATATTTCGATGGTGGATTGGTGGCGGCCCACGCT
ACAGCTCTAAAAGAAAGGAGCGGGCCAATTTCCCATTGGAGAGGAATGAT
AATCTGCCTTTGATGTGCCGCATCCCCAGTCAGGTTTAACTAGACTATTT
AACTAGTCGACTAATTCACGCTCAACCCCATAGTTTCTCGTTGGGATACG
ATATTTCTTAATATTCTTTAGCCGTCCCGCCTGAGAAAGTAACTTTTTTG
ACTTCAAACTTAATAAGAATACACCAATCGATAAAAATAATCCAAGCGAT
GCCCCTAATCTGGACAGATTCTCTTACGGGGTCCCATATGGTCTTTACTT
TAGAGAGAATACGTGTCATGTGCGGAAAATTAGAATCTGATCAGAGATTA
CTCTCGATCGGGCTATCGTTAACTGCAATAGACGGACAAATAGTCATTGT
TCTAATTGGATANTTAACTGCAATAGACGGACAAATGGTCATTGTAACGA
GTATTCGATAAATTCTAATTGGATGTATACAGATTTATTTTGCGTCAGCA
AAAATTTCCCAGTTTGCAGAGTACAGTATGGCAAGGCTGCACTCAAGGAA
AAATTTCGGAAAACCAAGTTCTGTGCACCGGAATAACACACCTGATAAAT
TTTGGTCCAGACAAGGTGCACCTATATTTCGAAAATTCGCCCAAAAAGGC
AAAAAAAGAATTGTTAAAATTATATACGCCTGCACTTGAGCTTGAGGAAA
AAATAGCTGAAACTCTGCTGCAAGTCTGAACTTGCACCTGAAAACCTGAA
AACCTCAAAATTTTGCACCTACACAACAACTTTCATAATCAACCATCCTT
TTTCAGAGATTTATGGAACATTTTACACGGATGATTAATCATCTTAATCA
TCCGTGTAAAATGTTCCATAAATCTCTGAAAAAGGATGGTTGATTATGAA
AGTTGCTGTTTTAAATAAATCATATCATGTTTTTAATCAAGGAAATCTTT
CAAGGAAGCTCTTAGATATTTGGGGAAATTTATTCTGCTTTTTTCCCAGC
TTTTTCAAAAAAAGGGAACGTTCTTATCTATTTTAGGTTTTTGGGCCAGT
TCTTGACGTCTTACCCTTCCGAACAGCCAAGGAAGCTATCAACTTAGCCA
ACAACACAACACTCGGTGGTAGTGTTTGGTCGGAACACATCGGTCTAGCA
ATGGAGGTAGCATCCAACATCCAGGCTGGATCCGTATGGATCAATAACCA
TAATGTGTTTGATGCGGCTGCCGGTTTCGGTGGTTACAAAGAAAGTGGTT
ATGCCGTGATGGTGGAAAAGAGGTACATGTTAAGCTCGTTTGTTGTTTTG
CTCACTTGTTTATCTTGTTTATCAAATCTCGAAATCGTTCCTCAACAACA
CAAATTTTTTACGGTGCTTCAGTGACACTTGTTAATATGGTGAACCCAGT
CGGACATACCAGGAAAACATTAATCAAGCTTCGTCTCTATAGGTGCTCTA
CTTGTACTAAGCAGCATGACGTAAAACATTCTCTTAACTTTTATATGGAA
TTTGGTCCGCTTATTTTATTTTATCTTTGACAGGGTTTATATGAATAAGT
GAAACCAAAATGGTCGGTTTTTGGAAAATTTTCTGAAAAATTCCTCCTGA
GCAGAAAAATATCAAAATGAATATCAAAACAATCAAATTTATTTGGAATG
ATCAAAATTAATCATTTTGACAAACTGAAAACATTCAACCACCAAATTAA
TGATTTATTTAATGAAATACTTCAAAGTGTAAATAACCTTACTCAAAATA
AACAATAACTTGTAATTGAAATAATGATGTGACAATGAATGAATATTAAT
GTTAGATTTAACAAGAGTAGTCTTATTGCGAGGCTAGAAAATAGTGTTTA
CAGACTCATGCACTCAGAGTCAGTTCTAAAAGGTTAAAAATATTTATCAA
CCAAAATGCTTTAGTATAAACACCAATTTTTACGATCCCTTCGAGATGAA
ACCACATTTCAAGCCTTTGCATTTTTGTCGTCTTACTTCAATCACGTAAA
CTTATTTGAAAAATAAAATAGTACACATTTTTAATTATATCCAGCTACAG
CAATAGATGCCCTCTTTTCAAAAGATATTTTTCTAGCAACATTCCATTGG
TGTATGAAGAATTCAACATAAAACGTAAAATGTTCCTGGGTCATTAGTTT
GCCAGACGTCTTGACACATTGTAGAAAGCTATTAAACTGCTCACAGATTG
AAGTGTTCACTCCTTTGAATCCCAACAAACGGCGTGATTTGTATGTGAGT
GAACATTTATGCGTGTAGCCATGAAAAATGTCATGGAAAAATCTTGTGTC
AGCAAAAAATCCATTCTCTCTGTTTCTACAGTACTCCTCCAAGGAGCAAG
AGAAGTCATAAAAAATATTTTCTGGTGCTTTTTCTAGATACGAGTAAAGC
GAGTTGGCAGCATCCTTGCGACCCTCAGACGATGTAATGATGTGGTATCC
CCAGCAATGGCCGTGACTCGGACAGAACCAAAGGAAAAGGTAAGTCGTAC
CTTTGTGGGATACATTAGGGAAAATCTTTGAGCATGGTACATCAGGTGTA
TCATCAAAGTTACCTTTCTTTTTCTCATTATCACGGTCAATGGAGAACAC
ACGTGGCTTCCTGATCTGATTACCGTGATCAGTGAAATAGTAGGCTCTCC
CTGTTTTTGCTGGGTTGTAAACGTCGAACATGGATGATGCCTGAGGTGGA
ATGTTATTTTCCTCTAGTTTTTCTCTCATCGATACGAGCTTGGTGATAAA
ATCTTTCACGTAGGGATCAATGATACCATTTGAGAGATTGGTTGTAATAA
CATACCAATCTCCCAGCTCGGGAAAAAAGTGCTTCGTAATGCAGTGAAAG
GTATCTTTGAATGTAGCATCTTTCGTTACTTCAGAGTCGACTGTCTTTTT
GAGCATTTCAATATATTTTTTAGGTATTGTGTTGGTGATGCTGGCATCTG
TGGTCAATACGTGAAGAACTTTCGCCAATGAACCGCGTTCAAGTGGATGC
ACTGATTGGACAAACAATTTGTTGACTACATCAACGATCACTTTGTCTTT
GCAATCATGTTTGACCATTTCAAGATGTTCATCGATCTTTTCTTGATCAA
GCTTGTTCTTCCCCATCACATGGTTTGCCAACTCTGAGACTGCCTTGTTG
ACATCAGCTCGTTTACCGGTCGTGTTGTTGTTATTGATGAAGGTGCGTCC
GTACCTTCGTGTGAGCGTTTTGATTGGTTCACCTTCTGCCGTCTCGATCG
GAACCACGTCAGACTGTTTCAATGTGATTCCTATTTTGGTACCGTCTGCA
GCCAAGCATTTTAGTTTGTCGCCGCAACCGAAACATTTTTTCCTGAAGTT
GATTTTCATAGATGATGCCCAGGAAAACCACCACTTGATGAACGTGTTTC
TCGACATGAAAGTCTTTTTTGATTTTGCACGTTTGTATTTTCGTTTGTAG
AACTTTACAAAACCGGAAAATGTTTGGCGACTGGTCATAACCAAATCCAC
GAATTCCCACCCCATTTCCCAACTGCAGGCTACACTCGGGGATGAGCGAT
AAATACAATCTTCGAAACCATATTTTCGAATGCACGATCCTTTGATGCAC
CTTCGCTTGAATATTTTGGCATCAACAGCACCAGCTGAGGTATAAAGCGT
GGTTTCGCCATCAGGAATCAAATGACCATCGGGAATATCTTCAGTGAACC
ATACACCCTGAACGAAAGGAAAACAAACTTTATGGTAGTACTAAATTACA
GTATAATTGCAAATGACTTTGGAGTTGCATGAATTTATTCCGGTTCTTCT
GCTCAAACAAGATGTCATTGTGTCATTATGTCATTAAACTTCGATATACC
GAATTACGAACAAACTATGGTCAGAAGTTGAACTTTCTGTTCTTCTATTT
TTGTCATTATTTTTAAAATTTCAAATCATTAAATTTTTTGAATTTGAATT
TTCTCAAATAATAAAACATTATTATCCAGTTTTAAAAGTGGTGGTCATAC
CTCACATTCACACGAGCCTGTCTTGTCAGGTATTAATTGTATATCTTCCC
GTTTGAAAATTTTCAGTGAAAATTCCTCAACCTTTGACATCAACGTTTCG
TAAAAGGGATCTTGATCGACTGATTGTTTGCTTGTAGCGCAATTGTGAAA
CTGCCACTGCTTGAGCTCCTCGTCAAACACCTTTTCATTTGGTTTCTATG
AGACAATTGTTATTTAAGAGCATTAAATTATTCACTATTTTTTTATATAT
CGATACCAGGGGGGGTCCACTTTCAAAAATGGTAGTGTGTATTTGTATAT
GATTCCTAGGATATAAACTTGTTTGTAAATCTCATTTTTGCTAAAATAGG
CGTTAGAAATTAAATTTGTTGTTCTATGGCCAGATCGTAATATGGGTCGG
TCGGTATAATAAAAATAAATATTTCGAAATTTAGGGTCGACAAAGTGCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030275XLOC_030275Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047530-exon-scaffold_131-1575043694:45398..45608TCONS_00047530-exon-scaffold_131-1575043694:45398..45608Clytia hemisphaericaexon
TCONS_00047530-exon-scaffold_131-1575043694:35670..35771TCONS_00047530-exon-scaffold_131-1575043694:35670..35771Clytia hemisphaericaexon
TCONS_00047530-exon-scaffold_131-1575043694:33709..35235TCONS_00047530-exon-scaffold_131-1575043694:33709..35235Clytia hemisphaericaexon
TCONS_00047530-exon-scaffold_131-1510915933:45398..45608TCONS_00047530-exon-scaffold_131-1510915933:45398..45608Clytia hemisphaericaexon
TCONS_00047530-exon-scaffold_131-1510915933:35670..35771TCONS_00047530-exon-scaffold_131-1510915933:35670..35771Clytia hemisphaericaexon
TCONS_00047530-exon-scaffold_131-1510915933:33709..35235TCONS_00047530-exon-scaffold_131-1510915933:33709..35235Clytia hemisphaericaexon
TCONS_00047530-exon-scaffold_131-1491911889:45398..45608TCONS_00047530-exon-scaffold_131-1491911889:45398..45608Clytia hemisphaericaexon
TCONS_00047530-exon-scaffold_131-1491911889:35670..35771TCONS_00047530-exon-scaffold_131-1491911889:35670..35771Clytia hemisphaericaexon
TCONS_00047530-exon-scaffold_131-1491911889:33709..35235TCONS_00047530-exon-scaffold_131-1491911889:33709..35235Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_131supercontigscaffold_131:33709..45608 -
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
17.5921	18.0393	6.70929	4.94999	35.8272	31.1327	25.0964	34.4612	22.7607	27.5225	30.7857	21.1754	27.6741	23.5504	8.18402	11.4878	9.40563	13.3404	13.0551	15.8255	11.9609	10.984	20.4084	17.3583	18.3835	36.9334	23.469	19.8804	18.3725	20.2092
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047530 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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