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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047528 ID=TCONS_00047528|Name=TCONS_00047528|organism=Clytia hemisphaerica|type=transcript|length=358bp
CCCACAGGACACAACCGAAACAACACCACAAGAGGCACAACAAGTGAACG
TTGAAGAAGTCGTCGTTGTGAAGAAAGAATCATCAAAAAGTACGacaaaa
gatgaaccagctaaAGGAACCAAGAAAACTGATTCTACTGTTGGTGCAGA
GAAAACTACTTCGGAGGCCTCTGGAATCGATTTCAATTTGGTATCAAGAA
GTCATAATGGTGTTATTGAAATCTTAGAGGACTCACAGGATATAATCAAA
ACAACGCCACAAGAGGCACAACAAGTGAACGTTGAAGAAGTCGAAGTAAA
GGAAGAATCGTCAAAAAGCAAGACAAAAGATGAACCTGCTAAACGTGTCG
AAACAAAN Run BLAST on NCBI protein sequence of TCONS_00047528-protein >TCONS_00047528-protein ID=TCONS_00047528-protein|Name=TCONS_00047528-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
PQDTTETTPQEAQQVNVEEVVVVKKESSKSTTKDEPAKGTKKTDSTVGAE
KTTSEASGIDFNLVSRSHNGVIEILEDSQDIIKTTPQEAQQVNVEEVEVK
EESSKSKTKDEPAKRVETX Run BLAST on NCBI transcript from alignment at scaffold_131:2314..3782- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047528 ID=TCONS_00047528|Name=TCONS_00047528|organism=Clytia hemisphaerica|type=transcript|length=1469bp|location=Sequence derived from alignment at scaffold_131:2314..3782- (Clytia hemisphaerica)
CCCACAGGACACAACCGAAACAACACCACAAGAGGCACAACAAGTGAACG
TTGAAGAAGTCGTCGTTGTGAAGAAAGAATCATCAAAAAGTACGACAAAA
GATGAACCAGCTAAAGGAACCAAGAAAACTGATTCTACTGTTGGTGCAGA
GAAAACTACTTCGGAGGTAGGTGGACTTGTTTGTTCTTTTGTTTTTCTTT
GTTGAATTTTAGCTTCTGATTAATTTTTCGGATATTGCATGAAAGTTCTA
AATTGGAGAGCACAACTATCACAAGTTCTTGTGAAAATTAAAAAATTTGA
CTATTCGCCAAAATGCTTGCCAAAATTAAGTTTTCGCCAGAAAAGGTTCC
CTTAATCTAGGTCATAATAAATGCAACTTCCTTTAAATAGGGGGATGCCA
ACTTTTTTTGTGGGGCTTTTGTGGAAGGGGTACCAAGATTTACAAAAAAA
ACTGGGGGGCTGGAAATGTTTGTTTCAGTCAGTCTGTTTCTCAGTCTCAA
GTCCACTACTATCGTTTAACTTGATAGTAAACTAAATAAGCACTTTCAAC
ATAGCAACATTTAGATTTTAAAATGTGATAATGGATGGCAAAAAGGTATT
ATGTTAATAATAACGCTAGTGTGAAATTGTTGACTTGTGACTGTATAATA
TACACTGTACTCTTTCTTTATCATTTTGGTAGGTGGTGCATAGAGCGAGT
TTCCTTCGATCGAAATGGACTTTCTGTAAAAAAAGGGGAGATGAAATTAG
TTTTAATTACAGAAGGGGGATGGGTACCAGGGGAGTTCATACCTCTCTGC
AAACAATTCAGGTTCCGAGTTCGAATAGTGTAGTTTTTAAGCCAAACAAT
CGAAACATTTTTAGGGATAGCCTAAACTTTAAGCTGTCATACTGATGTTC
CTAATATTTGATTTTACAGGCCTCTGGAATCGATTTCAATTTGGTATCAA
GAAGTCATAATGGTGTTATTGAAATCTTAGAGGTTTGTAAACTGATTAAA
ATGAAGCCATGCGGTTTAAAAAATTTATGAGCACGAAAGTTGAGTTTAGC
GAGATATCTTGAAGCACTTGGCAAGTCGAAATATTATAAAAAGGTACCCC
AGAAGCACAAACGTAAAAAAATCTTGACACTCTTAGACTTCCTTTGGTCT
TTCGTTTTTCTTTGTTGAATTTCAGCTCCTGATAAGTTTTCAAAACAGAA
TGGGAGGTTGGAATTTAGTCACTACAAGGCATGATCAGTAATAAGCCAAA
ATTAACTCCACATATCACAGACCGGACAGTTTCTGGTTATGAAAGTGATG
ATGAGAGTTACTCCTTTTGACTGTATGAATTTTCTCCCAGGACTCACAGG
ATATAATCAAAACAACGCCACAAGAGGCACAACAAGTGAACGTTGAAGAA
GTCGAAGTAAAGGAAGAATCGTCAAAAAGCAAGACAAAAGATGAACCTGC
TAAACGTGTCGAAACAAAN Coding sequence (CDS) from alignment at scaffold_131:2314..3782- >TCONS_00047528 ID=TCONS_00047528|Name=TCONS_00047528|organism=Clytia hemisphaerica|type=CDS|length=1071bp|location=Sequence derived from alignment at scaffold_131:2314..3782- (Clytia hemisphaerica)
GACTCACAGGATATAATCAAAACAACGCCACAAGAGGCACAACAAGTGAA
CGTTGAAGAAGTCGAAGTAAAGGAAGAATCGTCAAAAAGCAAGACAAAAG
ATGAACCTGCTAAACGTGTCGAAACAAANGCCTCTGGAATCGATTTCAAT
TTGGTATCAAGAAGTCATAATGGTGTTATTGAAATCTTAGAGCCACAGGA
CACAACCGAAACAACACCACAAGAGGCACAACAAGTGAACGTTGAAGAAG
TCGTCGTTGTGAAGAAAGAATCATCAAAAAGTACGACAAAAGATGAACCA
GCTAAAGGAACCAAGAAAACTGATTCTACTGTTGGTGCAGAGAAAACTAC
TTCGGAGGACTCACAGGATATAATCAAAACAACGCCACAAGAGGCACAAC
AAGTGAACGTTGAAGAAGTCGAAGTAAAGGAAGAATCGTCAAAAAGCAAG
ACAAAAGATGAACCTGCTAAACGTGTCGAAACAAANGCCTCTGGAATCGA
TTTCAATTTGGTATCAAGAAGTCATAATGGTGTTATTGAAATCTTAGAGC
CACAGGACACAACCGAAACAACACCACAAGAGGCACAACAAGTGAACGTT
GAAGAAGTCGTCGTTGTGAAGAAAGAATCATCAAAAAGTACGACAAAAGA
TGAACCAGCTAAAGGAACCAAGAAAACTGATTCTACTGTTGGTGCAGAGA
AAACTACTTCGGAGGACTCACAGGATATAATCAAAACAACGCCACAAGAG
GCACAACAAGTGAACGTTGAAGAAGTCGAAGTAAAGGAAGAATCGTCAAA
AAGCAAGACAAAAGATGAACCTGCTAAACGTGTCGAAACAAANGCCTCTG
GAATCGATTTCAATTTGGTATCAAGAAGTCATAATGGTGTTATTGAAATC
TTAGAGCCACAGGACACAACCGAAACAACACCACAAGAGGCACAACAAGT
GAACGTTGAAGAAGTCGTCGTTGTGAAGAAAGAATCATCAAAAAGTACGA
CAAAAGATGAACCAGCTAAAGGAACCAAGAAAACTGATTCTACTGTTGGT
GCAGAGAAAACTACTTCGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047528-exon-scaffold_131-1575043694:3617..3782 | TCONS_00047528-exon-scaffold_131-1575043694:3617..3782 | Clytia hemisphaerica | exon |
| TCONS_00047528-exon-scaffold_131-1575043694:2801..2863 | TCONS_00047528-exon-scaffold_131-1575043694:2801..2863 | Clytia hemisphaerica | exon |
| TCONS_00047528-exon-scaffold_131-1575043694:2314..2442 | TCONS_00047528-exon-scaffold_131-1575043694:2314..2442 | Clytia hemisphaerica | exon |
| TCONS_00047528-exon-scaffold_131-1510915933:3617..3782 | TCONS_00047528-exon-scaffold_131-1510915933:3617..3782 | Clytia hemisphaerica | exon |
| TCONS_00047528-exon-scaffold_131-1510915933:2801..2863 | TCONS_00047528-exon-scaffold_131-1510915933:2801..2863 | Clytia hemisphaerica | exon |
| TCONS_00047528-exon-scaffold_131-1510915933:2314..2442 | TCONS_00047528-exon-scaffold_131-1510915933:2314..2442 | Clytia hemisphaerica | exon |
| TCONS_00047528-exon-scaffold_131-1491911889:3617..3782 | TCONS_00047528-exon-scaffold_131-1491911889:3617..3782 | Clytia hemisphaerica | exon |
| TCONS_00047528-exon-scaffold_131-1491911889:2801..2863 | TCONS_00047528-exon-scaffold_131-1491911889:2801..2863 | Clytia hemisphaerica | exon |
| TCONS_00047528-exon-scaffold_131-1491911889:2314..2442 | TCONS_00047528-exon-scaffold_131-1491911889:2314..2442 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_131 | supercontig | scaffold_131:2314..3782 - |
Blast
The following BLAST results are available for this feature:
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