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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047513 ID=TCONS_00047513|Name=TCONS_00047513|organism=Clytia hemisphaerica|type=transcript|length=1988bp
ACACGAAACCAGTCACAAACTTCCGACAGTTGATAAATGGAGACAAACAT
GGATTTTGGGGTAATTTCATCTTCGATTCTAACAATACCATACAACTTTC
TTGGGATCATGTCCATTTTTACCACGGTTATGAGCTTTATTGGTGGACGA
ACATTAATGGACTGAAGGGTCAGATCTATATCGATCCCACAGTGTTGGAA
CCATCGCGTCTGTACGAAGTTGAATATTACTCGTTTACTGAATACTCAAA
CAATTATGTTTACTACTTCAAACTCCAAGGATGGCTGTATGGTCGGGGCT
ATGGTGAAATGTCTAAAGTattgaaagccttaaaaccgtATGTTGGCCAA
CTGTTTCCTGTCGAGAATATCCGTCAACTTTATAATGGCGATAAAACTGC
CATCCATATCGATTGGAAGCAACAACTATCACGCCTCACTTATGCTATCG
ATTTTTGTCCTAAATACCGCTGTAACTCTGATGAAAATACGAAGTCAAAA
ATTGTTCATGCAGTTAATGAAACCTTTATTGGTGGTTTGGAACATATTTT
ATATAAGATTACTGTGTATCAAGTAATCCAATATAACCAGTCACTTGGAT
TATCTAGTGATCAAATTGCaaagataaatcttttttcaaagattcagGCA
AGCTCTGTCATCTTGAAAGCTGGATTCATCGGTCAGCCGTCTGCCGTGCA
AGGTCTTGAGCAGTTGAAGAGTCAAAGTAATCAATCCATAACGTTGAGAT
TCAACATGCTCACTCGTGGGCAAAATGGAGATGCAAAAGTGTTAGGTTAT
AAAGTGAAGGTTTATTTGAATTCTACTTTATTGAGATCGGGTGATTGCCA
ACGTGATCATGAAACACACTTTTGGGTGTATTGTTTTGTGGGTGATGTAC
CGCCATCAACTACTCTTGATGTTTCTGTTTATGGATACAACCGCTTCGGG
GATGGTAATCGAAGACTTCTTATAGCTCAAGTTAACCAATCTATTTTTAC
CGATCTTCCCAAACAAGTCAAAGATTTGATAGTGTCCAGCAACACTAAAG
ACGAGACTTCAATTAAATTGCAATGGGAGAAGATCACTATCCACGACGCT
GGCTTGAATGTCGGTTTCTTCCACATCAAGAGTTACAAAGTAGTTTTATC
GTCTAACGAAAACAACTGGGAAAAGGAGATTGGTATTAGGAACTGGTATA
TTTTAAACAGTACTCCTAAAGGTAAGCATCACATGTCGAATGCAAAATCT
TCAACACACATAAGGTCTACCGTccccccccccagaaatttGGGGGTACC
TCAAAAAGAAAGtgttaaaaaagttttcttaaatttaggggctacctgat
atgtttgggggtacctgcaTTTTCACAAGTGTTTTTTATGAAGTCATGGT
GGCCAGCGACCCTTGAATTCCCTGAAATACCCTTCCTTGAGGTGCAAGAT
TTATActcttgaaacccttgaaatgccaaattttgtggccattttccgcc
attttcactttcagaaatacaaaatttttcgTATTGCGTGGGATACAAAC
ATAAGTGAATTAAATGAGAAGGCATACTTTTAGAACCCCTGAGATTCAAG
GGGGTATTCTGACAGGTATAGAACGATTGGTACGGGTCCCGGTGGGGGGG
GGACACTCGTTCTGAAATGGACTATACGTTCGAcccaaaattgactttca
aaatcggactcttacagtgcagaaatAAGCTATGAAATTAAACCGACCTT
ACAGTGCATCATTCTCTTCACCAGACCTTTTCATTGGAGCAcctttcttt
aaaaaaggtaacttttcatttgaaaattaagTAATTAAAGGTAATTTGCT
ACCCTCACAGTCCAGGTAAAGGTAAAAGATACTGTTACAGTGCAGCACTG
GTAAAAACCCCTACGGTGCACTAGCTGAACCTTGAAAAACCGAACCTTAA
TGCCGCACGTCTGGTaagtcatttaccttgagtacccc Run BLAST on NCBI transcript from alignment at scaffold_130:21244..24257- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047513 ID=TCONS_00047513|Name=TCONS_00047513|organism=Clytia hemisphaerica|type=transcript|length=3014bp|location=Sequence derived from alignment at scaffold_130:21244..24257- (Clytia hemisphaerica)
ACATTTCTATTTAACTTTTTAATTTTCCTTTATTCATTCTATGATTTCCT
TCCCTTAAAATTCAAAAAATAATTAGGTAAAAGGGTAAAATAATTGTTCT
GTTTTAACTAGGCAGAGATTTTTATAATTGGAATTCTCAAAGCCCCTGCC
TTCATGACCAAAGTATAGTTTTCCGATAGGGTGAAATCTTTCTCTCTTTA
AAAATAAAGGACAATCATTTGCCGATTTTTCCAGTAAGTAGAGCGTGACC
TGGGAAGAAAAAGAAGGTTTAAAAAGCCTTTATGCTAAAATTATGATTAC
TGAAAATGAGAAATGTATAAAGGTCAACTTGGAAGAGTGGAACTTTGAGA
AAAAATCAGGCAATGGATTTGAATTTAGAAGGATAAAGCACTCTTCTTGC
TATATCTGATGTCTTATTCCCTTTCTTTGTTAGAAAAACACCTCTGAATG
ACCTGAATGAAATTATACAGTTTCGAATGCAAAAAGATATCACGAGAGGC
ATTGTGCCCATTTCGTTTCGTTTCGTTTCAGATTACACGAAACCAGTCAC
AAACTTCCGACAGTTGATAAATGGAGACAAACATGGATTTTGGGGTAATT
TCATCTTCGATTCTAACAATACCATACAACTTTCTTGGGATCATGTCCAT
TTTTACCACGGTTATGAGCTTTATTGGTGGACGAACATTAATGGACTGAA
GGGTCAGATCTATATCGATCCCACAGTGTTGGAACCATCGCGTCTGTACG
AAGTTGAATATTACTCGTTTACTGAATACTCAAACAATTATGTTTACTAC
TTCAAACTCCAAGGATGGCTGTATGGTCGGGGCTATGGTGAAATGTCTAA
AGTATTGAAAGCCTTAAAACCGTATGTTGGTAAGACTACCATGATTTTAG
ATGATTCGATTCACTAATTCTAATGTTACTAGTAGGCATTTTTCCTTGGG
CATTAATATGTATGTATCCTCCTTTTTTGTTACAGCTGGTCAAGTGTTTT
TTTATATGAACTTCCATTTTCGGTATTCTTTCAAAAAAAAACATGTATTG
AATATCTGCCATGATTGAAAGGAGAACATTTTTTAGCGAGCACAAGTTCA
TACTTACCACCTTTCAATAATAAAGGTGCGTCAAGAAGCCAGTATTATAT
TGTATAATTCGGTCAACATTTAGGCCAACTGTTTCCTGTCGAGAATATCC
GTCAACTTTATAATGGCGATAAAACTGCCATCCATATCGATTGGAAGCAA
CAACTATCACGCCTCACTTATGCTATCGATTTTTGTCCTAAATACCGCTG
TAACTCTGATGAAAATACGAAGTCAAAAATTGTTCATGCAGTTAATGAAA
CCTTTATTGGTGGTTTGGAACATATTTTATATAAGATTACTGTGTATCAA
GTAATCCAATATAACCAGTCACTTGGATTATCTAGTGATCAAATTGCAAA
GATAAATCTTTTTTCAAAGATTCAGGCAAGCTCTGTCATCTTGAAAGCTG
GATTCATCGGTCAGCCGTCTGCCGTGCAAGGTCTTGAGCAGTTGAAGAGT
CAAAGTAATCAATCCATAACGTTGAGATTCAACATGCTCACTCGTGGGCA
AAATGGAGATGCAAAAGTGTTAGGTTATAAAGTGAAGGTTTATTTGAATT
CTACTTTATTGAGATCGGGTGATTGCCAACGTGATCATGAAACACACTTT
TGGGTGTATTGTTTTGTGGGTGATGTACCGCCATCAACTACTCTTGATGT
TTCTGTTTATGGATACAACCGCTTCGGGGATGGTAATCGAAGACTTCTTA
TAGCTCAAGTTAACCAATCTATTTTTACCGGTAAATTTCTTACACATACG
TATTATACCACTAATATTTATAACACCTTTTCGAAAACCCTCATTTATTG
TTTGGTTTCATGATGTTTTTTCGAAAATGTTCTGCTCAATAACCTTCTGT
CAAACACCAAGAAATTAACTTTTTCTTCTAATAAAATGGAGAATACTCCG
ACTATCGATATGTAACTTCTATTCACAGATCTTCCCAAACAAGTCAAAGA
TTTGATAGTGTCCAGCAACACTAAAGACGAGACTTCAATTAAATTGCAAT
GGGAGAAGATCACTATCCACGACGCTGGCTTGAATGTCGGTTTCTTCCAC
ATCAAGAGTTACAAAGTAGTTTTATCGTCTAACGAAAACAACTGGGAAAA
GGAGATTGGTATTAGGAACTGGTATATTTTAAACAGTACTCCTAAAGGTA
AGCATCACATGTCGAATGCAAAATCTTCAACACACATAAGGTCTACCGTC
CCCCCCCCCAGAAATTTGGGGGTACCTCAAAAAGAAAGTGTTAAAAAAGT
TTTCTTAAATTTAGGGGCTACCTGATATGTTTGGGGGTACCTGCATTTTC
ACAAGTGTTTTTTATGAAGTCATGGTGGCCAGCGACCCTTGAATTCCCTG
AAATACCCTTCCTTGAGGTGCAAGATTTATACTCTTGAAACCCTTGAAAT
GCCAAATTTTGTGGCCATTTTCCGCCATTTTCACTTTCAGAAATACAAAA
TTTTTCGTATTGCGTGGGATACAAACATAAGTGAATTAAATGAGAAGGCA
TACTTTTAGAACCCCTGAGATTCAAGGGGGTATTCTGACAGGTATAGAAC
GATTGGTACGGGTCCCGGTGGGGGGGGGACACTCGTTCTGAAATGGACTA
TACGTTCGACCCAAAATTGACTTTCAAAATCGGACTCTTACAGTGCAGAA
ATAAGCTATGAAATTAAACCGACCTTACAGTGCATCATTCTCTTCACCAG
ACCTTTTCATTGGAGCACCTTTCTTTAAAAAAGGTAACTTTTCATTTGAA
AATTAAGTAATTAAAGGTAATTTGCTACCCTCACAGTCCAGGTAAAGGTA
AAAGATACTGTTACAGTGCAGCACTGGTAAAAACCCCTACGGTGCACTAG
CTGAACCTTGAAAAACCGAACCTTAATGCCGCACGTCTGGTAAGTCATTT
ACCTTGAGTACCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047513-exon-scaffold_130-1575043694:24256..24257 | TCONS_00047513-exon-scaffold_130-1575043694:24256..24257 | Clytia hemisphaerica | exon |
| TCONS_00047513-exon-scaffold_130-1575043694:23379..23721 | TCONS_00047513-exon-scaffold_130-1575043694:23379..23721 | Clytia hemisphaerica | exon |
| TCONS_00047513-exon-scaffold_130-1575043694:22428..23084 | TCONS_00047513-exon-scaffold_130-1575043694:22428..23084 | Clytia hemisphaerica | exon |
| TCONS_00047513-exon-scaffold_130-1575043694:21244..22229 | TCONS_00047513-exon-scaffold_130-1575043694:21244..22229 | Clytia hemisphaerica | exon |
| TCONS_00047513-exon-scaffold_130-1510915933:24256..24257 | TCONS_00047513-exon-scaffold_130-1510915933:24256..24257 | Clytia hemisphaerica | exon |
| TCONS_00047513-exon-scaffold_130-1510915933:23379..23721 | TCONS_00047513-exon-scaffold_130-1510915933:23379..23721 | Clytia hemisphaerica | exon |
| TCONS_00047513-exon-scaffold_130-1510915933:22428..23084 | TCONS_00047513-exon-scaffold_130-1510915933:22428..23084 | Clytia hemisphaerica | exon |
| TCONS_00047513-exon-scaffold_130-1510915933:21244..22229 | TCONS_00047513-exon-scaffold_130-1510915933:21244..22229 | Clytia hemisphaerica | exon |
| TCONS_00047513-exon-scaffold_130-1491911889:24256..24257 | TCONS_00047513-exon-scaffold_130-1491911889:24256..24257 | Clytia hemisphaerica | exon |
| TCONS_00047513-exon-scaffold_130-1491911889:23379..23721 | TCONS_00047513-exon-scaffold_130-1491911889:23379..23721 | Clytia hemisphaerica | exon |
| TCONS_00047513-exon-scaffold_130-1491911889:22428..23084 | TCONS_00047513-exon-scaffold_130-1491911889:22428..23084 | Clytia hemisphaerica | exon |
| TCONS_00047513-exon-scaffold_130-1491911889:21244..22229 | TCONS_00047513-exon-scaffold_130-1491911889:21244..22229 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_130 | supercontig | scaffold_130:21244..24257 - |
Blast
The following BLAST results are available for this feature:
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