TCONS_00047500 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047500
Unique NameTCONS_00047500
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length402

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047500 ID=TCONS_00047500|Name=TCONS_00047500|organism=Clytia hemisphaerica|type=transcript|length=402bp
ACTAATACCATGGGCGGAACTAGCCCTAAATCATGTCTCTTTTGCTCTCT
TAAAACGATTTCAGCAGCTTGAATTGGATTCCAAATTTCTTTTACACACC
CGACAGCTGCAAATTTATTTTCGTTagattccataatggcggcctCGCAC
TCGACGCTACCATCTTGAGTTAAATTGGAACCAAATCCCGCATTTGTCAA
TGGACTATTTTCAAGGTGCGAGGTGACAGCTGTAGCAACTTCAATACATG
ATTTACTCTGGTTCAACAATTCGACGCCGATTTTGATAGCTTGGTCACAG
AGCTCTTTATAACCACTCCTTTTTGAGTCGCTATGGTAACCAGCacccaa
atgtaaacaaaggaaACCACGCTTCAGTTTCATaatcttattttcttatt
tt
Run BLAST on NCBI

protein sequence of TCONS_00047500-protein

>TCONS_00047500-protein ID=TCONS_00047500-protein|Name=TCONS_00047500-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
MKLKRGFLCLHLGAGYHSDSKRSGYKELCDQAIKIGVELLNQSKSCIEVA
TAVTSHLENSPLTNAGFGSNLTQDGSVECEAAIMESNENKFAAVGCVKEI
WNPIQAAEIVLREQKRHDLGLVPPMVL
Run BLAST on NCBI

transcript from alignment at scaffold_13:43901..44302

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047500 ID=TCONS_00047500|Name=TCONS_00047500|organism=Clytia hemisphaerica|type=transcript|length=402bp|location=Sequence derived from alignment at scaffold_13:43901..44302 (Clytia hemisphaerica)
aaaataagaaaataagattATGAAACTGAAGCGTGGTttcctttgtttac
atttgggtGCTGGTTACCATAGCGACTCAAAAAGGAGTGGTTATAAAGAG
CTCTGTGACCAAGCTATCAAAATCGGCGTCGAATTGTTGAACCAGAGTAA
ATCATGTATTGAAGTTGCTACAGCTGTCACCTCGCACCTTGAAAATAGTC
CATTGACAAATGCGGGATTTGGTTCCAATTTAACTCAAGATGGTAGCGTC
GAGTGCGaggccgccattatggaatctAACGAAAATAAATTTGCAGCTGT
CGGGTGTGTAAAAGAAATTTGGAATCCAATTCAAGCTGCTGAAATCGTTT
TAAGAGAGCAAAAGAGACATGATTTAGGGCTAGTTCCGCCCATGGTATTA
GT

Coding sequence (CDS) from alignment at scaffold_13:43901..44302

>TCONS_00047500 ID=TCONS_00047500|Name=TCONS_00047500|organism=Clytia hemisphaerica|type=CDS|length=381bp|location=Sequence derived from alignment at scaffold_13:43901..44302 (Clytia hemisphaerica)
ATGAAACTGAAGCGTGGTttcctttgtttacatttgggtGCTGGTTACCA
TAGCGACTCAAAAAGGAGTGGTTATAAAGAGCTCTGTGACCAAGCTATCA
AAATCGGCGTCGAATTGTTGAACCAGAGTAAATCATGTATTGAAGTTGCT
ACAGCTGTCACCTCGCACCTTGAAAATAGTCCATTGACAAATGCGGGATT
TGGTTCCAATTTAACTCAAGATGGTAGCGTCGAGTGCGaggccgccatta
tggaatctAACGAAAATAAATTTGCAGCTGTCGGGTGTGTAAAAGAAATT
TGGAATCCAATTCAAGCTGCTGAAATCGTTTTAAGAGAGCAAAAGAGACA
TGATTTAGGGCTAGTTCCGCCCATGGTATTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030255XLOC_030255Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047500-proteinTCONS_00047500-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047500-exon-scaffold_13-1491911889:43901..44302TCONS_00047500-exon-scaffold_13-1491911889:43901..44302Clytia hemisphaericaexon
TCONS_00047500-exon-scaffold_13-1510915933:43901..44302TCONS_00047500-exon-scaffold_13-1510915933:43901..44302Clytia hemisphaericaexon
TCONS_00047500-exon-scaffold_13-1575043694:43901..44302TCONS_00047500-exon-scaffold_13-1575043694:43901..44302Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:43901..44302 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.94116	2.15107	3.33013	3.66527	2.23105	1.37123	2.59966	4.86754	1.08433	2.49435	0.186237	0.489699	1.58931	0.888738	1.0438	2.80041	2.20792	2.68737	0.586222	0.40896	0.53319	0	5.90148	4.59883	0.98681	1.23299	1.26029	0.538004	2.65237	3.53384
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000246Peptidase_T2
IPR029055Ntn_hydrolases_N
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016787 hydrolase activity
Blast
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BLAST of TCONS_00047500 vs. Swiss-Prot (Human)
Match: TASP1 (Threonine aspartase 1 OS=Homo sapiens GN=TASP1 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.596e-25
Identity = 55/129 (42.64%), Postives = 74/129 (57.36%), Query Frame = -2 
Query:    3 KLKRG-FLCLHLGAGYHSDSKRSGYKELCDQAIKIGVELLNQSKSCIEVATAVTSHLENSPLTNAGFGSNLTQDGSVECEAAIMESNENKFAAVGCVKEIWNPIQAAEIVLREQKRHDL--GLVPPMVL 380
            K KRG F+ +H GAGYHS+SK   YK +C +A +  +E L       +  TA    LE+SP TNAG GSNL   G +EC+A+IM+     F AVG +  I NP+  A  +L E ++  L  G +PP  L
Sbjct:   37 KEKRGGFVLVHAGAGYHSESKAKEYKHVCKRACQKAIEKLQAGALATDAVTAALVELEDSPFTNAGMGSNLNLLGEIECDASIMDGKSLNFGAVGALSGIKNPVSVANRLLCEGQKGKLSAGRIPPCFL 165
The following BLAST results are available for this feature:
BLAST of TCONS_00047500 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TASP14.596e-2542.64Threonine aspartase 1 OS=Homo sapiens GN=TASP1 PE=... [more]
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