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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047483 ID=TCONS_00047483|Name=TCONS_00047483|organism=Clytia hemisphaerica|type=transcript|length=1848bp
cctAGCTGCAACTGAAAGAGCTCTAAATCCGAAGACAAGTAAACTAATCG
TACTTTGATGGCAGCACGGAGAAAAAATTCTACTTATTAAATGAGGAATT
ATACTCTCATTTGTTGACATTGTTTAAGGTTTTTATAGTAATCGACTTAT
CCTCTAGTATTCTATGACTAAATAAGTAATAATTTTGTAATTCATTTCTA
AAAAATGGAACAACCTGATTGAGTTTGATGTTTTCAGCACcatttattga
ataaaaattcatcttCTACTTCTTCTACGTCAGCTTTTGGACATGGTGTC
TTTGTCGCTTAAAGTTTCATGAAACATTCAAAACCAACGTCGTCTTTTTT
CGACTTTCATTAAATGACTCCGCACCCATTGAGTCATCCACAACACCCAC
TGTGCCacccacaacaacaacaaaaaaagaaaagaaaatgaattaaCCAC
CTTTCCTTTCTGCCACTATACTGATGAGACGTTCAGCTACcaaactgaaa
aaatactattttaaaAACTATAGAGATCCTCTTAGTCTCATGGAACCTGA
ACCAAATGGAGAACAATAATCACCGAATGTTGTTTCAAacaattccaaaa
atgaattcCTGAAAAACCTTGCGAAACATCCAATACACCCATATCGATTG
CGCAATACTCATCCACGGTAAATTCAACATGAAAGCGaggcaaaaaaaac
aacaaataaaaaGATCCCTCACCAACGGCTTTGAAGATGACCAAATTGAT
TATTTTTCATCACAAAAAAAACGCCAGAAATCGAACCAATCTTCAAACTA
AAACAACAACGTTAACCCACACTACAAAATACCAACCAAGAAAACGAACA
AACAGACTCTCCACGGTCAATTTATAAGGCCTCCtcactgaaaaatgctc
ttaatcatgtaaaggctattgtgattgccaattttaaaataaagatttga
taggtcgatttttaacgatttcgagcactttctgaaagtaactttttcat
tttttaattgagcataacttttgatctaatgaatcaaatttaatatgtga
cccatcaaaatttaagtttatctttcctcTTTTCAGTAAAAtgggaatgg
ttcttttaaaatttttagatttcgaaaaaattagtttcaaagagagaaac
ttttttgtggcgcaccagGTACTTCTTCTACGTCAGCTTTTGGACGTCAG
TCTTTGTCGCTTAAAGTTTCCAGAAACATTCAAAACCAACGTCGTCTTTt
gtctccagtggtgcatatcatgaatacaccgATATCGATTGCGCAATACT
CATCCATGGTAAATTCAACATGAAAGCGaggcaaaaaaaacaacaaataa
aagATCTCTCACCAACGGCTTTGAAAatgaccaatttgattagttttCAT
CACAAAAAAACGCCAGAAATCGAACCAATCTTCAAACTAAAACAACAACG
TTAATCCACACTACAAAATACCAATCAAGAAAACGAACAAACAGACTCTC
CACGGTCAATTTATAAGATGTAGGTACAAAAGACGATTTTTTAATCAATG
ACCATTTTGTAAGAATTGAAAATTAGTATTTTCCACAACACTAACGTATA
TATGCAATTGAATTCAGAAGGCTTCAGGTATCCCATCCCTTTTCTACAGT
TTTCTAGTGTCATGTCTTCCGTGGACAATATCTTGAAAGCAGAAATCAAC
TCTCCATCCTTCTATGAAGAGGAAGTCAGAACTGACTTATATTCTTCAGA
TTTTGAAATCAATTCCATTCTTACATTACTATCCTATTCTAGCAATCTTA
TGCCTATTTCAGTGATTTGAGTTTTGCGTTCTCTTTTGCTATTTTAAG Run BLAST on NCBI transcript from alignment at scaffold_13:183256..186005+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047483 ID=TCONS_00047483|Name=TCONS_00047483|organism=Clytia hemisphaerica|type=transcript|length=2750bp|location=Sequence derived from alignment at scaffold_13:183256..186005+ (Clytia hemisphaerica)
cctAGCTGCAACTGAAAGAGCTCTAAATCCGAAGACAAGTAAACTAATCG
TACTTTGATGGCAGCACGGAGAAAAAATTCTACTTATTAAATGAGGAATT
ATACTCTCATTTGTTGACATTGTTTAAGGTTTTTATAGTAATCGACTTAT
CCTCTAGTATTCTATGACTAAATAAGTAATAATTTTGTAATTCATTTCTA
AAAAATGGAACAACCTGATTGAGTTTGATGTTTTCAGCACcatttattga
ataaaaattcatcttCTACTTCTTCTACGTCAGCTTTTGGACATGGTGTC
TTTGTCGCTTAAAGTTTCATGAAACATTCAGAACCAACGTCGTCTTTTGT
CGACTTTCATTAAATGACTCCGCACCCATTGAGTCGTCCACAACACCCAC
TGTGCCacccacaacaacaacaaaaaaagaaaagaaaatgaattaaCCAC
CTTTCCTTTCTGCCACTTTACTGATGAGACCTTCAGCTACcaaactgaaa
aaatactattttaaaAACTATAGAGATCCTCTTAGTCTCATGGAACCTGA
ACCAAATGGAGAACAATAATCACCGAATGTTGTTTCAAacaattccaaaa
atgaattcCTGAAAAACCTTGCGAAACATCCAATACACCCATATCGATTG
CGCAATACTCATCCACGGTAAATTCAACATGAAAGCGaggcaaaaaaaac
aacaaataaaaaGATCCCTCACCAACGGCTTTGAAGATGACCAAATTGAT
TATTTTTCATCACAAAAAAAACGCCAGAAATCGAACCAATCTTCAAACTA
AAACAACAACGTTAACCCACACTACAAAATACCAACCAAGAAAACGAACA
AACAGACTCTCCACGGTCAATTTATAAGGCCTCCtcactgaaaaatgctc
ttaatcatgtaaaggctattgtgattgccaattttaaaataaagatttga
taggtcgatttttaacgatttcgagcactttctgaaagtaactttttcat
tttttaattgagcataacttttgatctaatgaatcaaatttaatatgtga
cccatcaaaatttaagtttatctttcctcTTTTCAGTAAAAtgggaatgg
ttcttttaaaatttttagatttcgaaaaaattagtttcaaagagagaaac
ttttttgtggcgcaccagGTACTTCTTCTACGTCAGCTTTTGGACGTCAG
TCTTTGTCGCTTAAAGTTTCCAGAAACATTCAAAACCAACGTCGTCTTTT
TTCGACTTTCATTAAATGACTCCGCACCCATTGAGTCATCCACAACACCC
ACTGTGCCacccacaacaacaacaaaaaaagaaaagaaaatgaattaaCC
ACCTTTCCTTTCTGCCACTATACTGATGAGACGTTCAGCTACcaaactga
aaaaatactattttaaaAACTATAGAGATCCTCTTAGTCTCATGGAACCT
GAACCAAATGGAGAACAATAATCACCGAATGTTGTTTCAAacaattccaa
aaatgaattcCTGAAAAACCTTGCGAAACATCCAATACACCCATATCGAT
TGCGCAATACTCATCCACGGTAAATTCAACATGAAAGCGaggcaaaaaaa
acaacaaataaaaaGATCCCTCACCAACGGCTTTGAAGATGACCAAATTG
ATTATTTTTCATCACAAAAAAAACGCCAGAAATCGAACCAATCTTCAAAC
TAAAACAACAACGTTAACCCACACTACAAAATACCAACCAAGAAAACGAA
CAAACAGACTCTCCACGGTCAATTTATAAGGCCTCCtcactgaaaaatgc
tcttaatcatgtaaaggctattgtgattgccaattttaaaataaagattt
gataggtcgatttttaacgatttcgagcactttctgaaagtaactttttc
attttttaattgagcataacttttgatctaatgaatcaaatttaatatgt
gacccatcaaaatttaagtttatctttcctcTTTTCAGTAAAAtgggaat
ggttcttttaaaatttttagatttcgaaaaaattagtttcaaagagagaa
acttttttgtggcgcaccagGTACTTCTTCTACGTCAGCTTTTGGACGTC
AGTCTTTGTCGCTTAAAGTTTCCAGAAACATTCAAAACCAACGTCGTCTT
TtgtctccagtggtgcatatcatgaatacaccgATATCGATTGCGCAATA
CTCATCCATGGTAAATTCAACATGAAAGCGaggcaaaaaaaacaacaaat
aaaagATCTCTCACCAACGGCTTTGAAAatgaccaatttgattagttttC
ATCACAAAAAAACGCCAGAAATCGAACCAATCTTCAAACTAAAACAACAA
CGTTAATCCACACTACAAAATACCAATCAAGAAAACGAACAAACAGACTC
TCCACGGTCAATTTATAAGATGTAGGTACAAAAGACGATTTTTTAATCAA
TGACCATTTTGTAAGAATTGAAAATTAGTATTTTCCACAACACTAACGTA
TATATGCAATTGAATTCAGAAGGCTTCAGGTATCCCATCCCTTTTCTACA
GTTTTCTAGTGTCATGTCTTCCGTGGACAATATCTTGAAAGCAGAAATCA
ACTCTCCATCCTTCTATGAAGAGGAAGTCAGAACTGACTTATATTCTTCA
GATTTTGAAATCAATTCCATTCTTACATTACTATCCTATTCTAGCAATCT
TATGCCTATTTCAGTGATTTGAGTTTTGCGTTCTCTTTTGCTATTTTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047483-exon-scaffold_13-1491911889:183256..183580 | TCONS_00047483-exon-scaffold_13-1491911889:183256..183580 | Clytia hemisphaerica | exon |
| TCONS_00047483-exon-scaffold_13-1510915933:183256..183580 | TCONS_00047483-exon-scaffold_13-1510915933:183256..183580 | Clytia hemisphaerica | exon |
| TCONS_00047483-exon-scaffold_13-1575043694:183256..183580 | TCONS_00047483-exon-scaffold_13-1575043694:183256..183580 | Clytia hemisphaerica | exon |
| TCONS_00047483-exon-scaffold_13-1491911889:184483..186005 | TCONS_00047483-exon-scaffold_13-1491911889:184483..186005 | Clytia hemisphaerica | exon |
| TCONS_00047483-exon-scaffold_13-1510915933:184483..186005 | TCONS_00047483-exon-scaffold_13-1510915933:184483..186005 | Clytia hemisphaerica | exon |
| TCONS_00047483-exon-scaffold_13-1575043694:184483..186005 | TCONS_00047483-exon-scaffold_13-1575043694:184483..186005 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_13 | supercontig | scaffold_13:183256..186005 + |
Blast
The following BLAST results are available for this feature:
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