|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047472 ID=TCONS_00047472|Name=TCONS_00047472|organism=Clytia hemisphaerica|type=transcript|length=1826bpRun BLAST on NCBI protein sequence of TCONS_00047472-protein >TCONS_00047472-protein ID=TCONS_00047472-protein|Name=TCONS_00047472-protein|organism=Clytia hemisphaerica|type=polypeptide|length=493bp AFSMAFSANFFIVFSLLLFMVDHVKARQCKPNLLCPWTKQVVCGTDGKDYRun BLAST on NCBI transcript from alignment at scaffold_13:11392..39476+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047472 ID=TCONS_00047472|Name=TCONS_00047472|organism=Clytia hemisphaerica|type=transcript|length=28085bp|location=Sequence derived from alignment at scaffold_13:11392..39476+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_13:11392..39476+ >TCONS_00047472 ID=TCONS_00047472|Name=TCONS_00047472|organism=Clytia hemisphaerica|type=CDS|length=14820bp|location=Sequence derived from alignment at scaffold_13:11392..39476+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00047472 vs. Swiss-Prot (Human)
Match: AGRIN (Agrin OS=Homo sapiens GN=AGRN PE=1 SV=5) HSP 1 Score: 109.383 bits (272), Expect = 1.776e-24 Identity = 83/261 (31.80%), Postives = 119/261 (45.59%), Query Frame = 2
Query: 125 VCGTDGKDYRNMCYLLQERCRSGDTVTLAYHGPCD--------------TGRS-CRQYCPLTYQPVCGSDGQTYSNKCMLDVNNCLYKTNNVLVHYGKCK-------------NKGGSLCDRCDYNDKKTICGTDGITYYGTCSFQKAQC-HNRKLKQRHAGNCRKCDKACNYEYKHVCGSDGRTYSNECLLSIVTCKNPG---IKLKHIGACGTCPDTC-SKKKSLVCGSDGKTYQNECELKKEKCFVNKDLRIKFRGSC 808
VCG+DG Y + C L C G + +A GPCD TGR C C QPVCGSDG TY ++CML V+ C ++ + + G C+ + G +C RC++ +CG+DG+TY C ++A C ++++ AG C + + CGS G + C+ G + G C C +C S S VCGSDG TY ECELKK +C + L + +G+C
Sbjct: 501 VCGSDGVTYGSACELEATACTLGREIQVARKGPCDRCGQCRFGALCEAETGRCVCPSECVALAQPVCGSDGHTYPSECMLHVHACTHQISLHVASAGPCETCGDAVCAFGAVCSAGQCVCPRCEHPPPGPVCGSDGVTYGSACELREAACLQQTQIEEARAGPCEQAE----------CGSGGSGSGEDGDCEQELCRQRGGIWDEDSEDGPC-VCDFSCQSVPGSPVCGSDGVTYSTECELKKARCESQRGLYVAAQGAC 750 HSP 2 Score: 96.6709 bits (239), Expect = 1.589e-20 Identity = 82/291 (28.18%), Postives = 114/291 (39.18%), Query Frame = 2
Query: 101 LCPWT-----KQVVCGTDGKDYRNMCYLLQERCRSGDTVTLAYHGPCDT--------GRSCR--------------QYCPLTYQPVCGSDGQTYSNKCMLDVNNCLYKTNNVLVHYGKCKNKGGSLCDRCDYNDKKTICGTDGITYYGTCSFQKAQCHNRKLKQRHAGNCRKCDK-ACNYEYKHVCGSDGRTYSNECLLSIVTCKNP-GIKLKHIGACGTCPD--------------------------TCSKKKSLVCGSDGKTYQNECELKKEKCFVNKDLRIKFRGSC 808
LCP T + VCG+DG DY C LL+ C + V + GPCD RSCR + CP PVCG DG TY N C++ + V G+C+ + D+C C F A C +R+ + R + CD+ C+ Y+ VC DGRTY ++C C+ I KH G C P CS VCGSDG TY + CEL+ C + +++++ +G C
Sbjct: 271 LCPATCRGAPEGTVCGSDGADYPGECQLLRRACARQENVFKKFDGPCDPCQGALPDPSRSCRVNPRTRRPEMLLRPESCPARQAPVCGDDGVTYENDCVMGRSGAARGLLLQKVRSGQCQGR-----DQCPE----------------PCRFN-AVCLSRRGRPRCS-----CDRVTCDGAYRPVCAQDGRTYDSDCWRQQAECRQQRAIPSKHQGPCDQAPSPCLGVQCAFGATCAVKNGQAACECLQACSSLYDPVCGSDGVTYGSACELEATACTLGREIQVARKGPC 534 HSP 3 Score: 94.3597 bits (233), Expect = 7.461e-20 Identity = 77/279 (27.60%), Postives = 100/279 (35.84%), Query Frame = 2
Query: 104 CPWTKQVVCGTDGKDYRNMCYLLQERCRSGDTVTLAYHGPCDTGRS-----------------------CRQYCPLTYQPVCGSDGQTYSNKCMLDVNNCLYKTNNVLVHYGKCKNKGGSLCDRCDYNDKKTICGTDGITYYGTCSFQKAQCHNRKLKQRHAGNCRKCDKACNYEYKHVCGSDGRTYSNECLLSIVTCKNP-GIKLKHIGACGTCPDT-------CSKKKSL-----------VCGSDGKTYQNECELKKEKCFVNKDLRIKFRGSCIQ 814
C + VC DG+ Y + C+ Q CR + + GPCD S C Q C Y PVCGSDG TY + C L+ C + G C DRC QC L + G C C C + VCGSDG TY +EC+L + C + + + G C TC D CS + + VCGSDG TY + CEL++ C + G C Q
Sbjct: 421 CDGAYRPVCAQDGRTYDSDCWRQQAECRQQRAIPSKHQGPCDQAPSPCLGVQCAFGATCAVKNGQAACECLQACSSLYDPVCGSDGVTYGSACELEATACTLGREIQVARKGPC--------DRC------------------------GQCRFGALCEAETGRC-VCPSECVALAQPVCGSDGHTYPSECMLHVHACTHQISLHVASAGPCETCGDAVCAFGAVCSAGQCVCPRCEHPPPGPVCGSDGVTYGSACELREAACLQQTQIEEARAGPCEQ 666 The following BLAST results are available for this feature:
BLAST of TCONS_00047472 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.