TCONS_00047470 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047470
Unique NameTCONS_00047470
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length617

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047470 ID=TCONS_00047470|Name=TCONS_00047470|organism=Clytia hemisphaerica|type=transcript|length=617bp
CTTTGACTATGTCTTCTTCTTTATTGAAATCTCTTAAAATTATATGGAAC
TGCGATACAGTAATAATGCTCGGTTTTTTTTGTTAGACTGGATGACATGA
TTAAAGTggccaattttttaaataaaaatatcgaacTTGACATATCTCCT
AGTCTCTGATAAACTGTACTCAACCTCATCAAAGATCAAGGTTCTGTTGC
TTCCTCTACGTACTGTACAATCGGGTATGTAcaaaccaatgaagtaaaag
tcTGAAGAGCTAGAAGCGAATTTTCCTCGggcaagaaaaaaatgaatcct
TAAGGTCCTTAAGATAATGCGCCTTTATTTTAGAAGACTGATTGAATTta
gcggtttctttgttttcaagtgGTTTATTTTACTTTCCATCTGGTATCTG
CATAAAAACCAGGcgggccgctcaaggccgcgcaacttaggtaggattta
gcGGCTTCCAGTCCTACGTAGGAGATTCGATTCTCGAGACTTTgggcttt
tacttcattggAAAAAACTTATTACCTGTGAGTATACTTCTTCATCATAC
CAAATtcgaatttatttatttaccagttttaaagaatcaAGAGGTTTAAA
AGTTCGTCCAAAACCAA
Run BLAST on NCBI

transcript from alignment at scaffold_129:53791..54407

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047470 ID=TCONS_00047470|Name=TCONS_00047470|organism=Clytia hemisphaerica|type=transcript|length=617bp|location=Sequence derived from alignment at scaffold_129:53791..54407 (Clytia hemisphaerica)
TTGGTTTTGGACGAACTTTTAAACCTCTtgattctttaaaactggtaaat
aaataaattcgaATTTGGTATGATGAAGAAGTATACTCACAGGTAATAAG
TTTTTTccaatgaagtaaaagcccAAAGTCTCGAGAATCGAATCTCCTAC
GTAGGACTGGAAGCCgctaaatcctacctaagttgcgcggccttgagcgg
cccgCCTGGTTTTTATGCAGATACCAGATGGAAAGTAAAATAAACcactt
gaaaacaaagaaaccgctaAATTCAATCAGTCTTCTAAAATAAAGGCGCA
TTATCTTAAGGACCTTAaggattcatttttttcttgccCGAGGAAAATTC
GCTTCTAGCTCTTCAgacttttacttcattggtttgTACATACCCGATTG
TACAGTACGTAGAGGAAGCAACAGAACCTTGATCTTTGATGAGGTTGAGT
ACAGTTTATCAGAGACTAGGAGATATGTCAAgttcgatatttttatttaa
aaaattggccACTTTAATCATGTCATCCAGTCTAACAAAAAAAACCGAGC
ATTATTACTGTATCGCAGTTCCATATAATTTTAAGAGATTTCAATAAAGA
AGAAGACATAGTCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030237XLOC_030237Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047470-exon-scaffold_129-1491911889:53791..54407TCONS_00047470-exon-scaffold_129-1491911889:53791..54407Clytia hemisphaericaexon
TCONS_00047470-exon-scaffold_129-1510915933:53791..54407TCONS_00047470-exon-scaffold_129-1510915933:53791..54407Clytia hemisphaericaexon
TCONS_00047470-exon-scaffold_129-1575043694:53791..54407TCONS_00047470-exon-scaffold_129-1575043694:53791..54407Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_129supercontigscaffold_129:53791..54407 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.260866	0	0.0984552	0.096323	0.117264	0	0	0.104661	0.0732755	0.272291	0	0.463294	0.693974	0.180175	0.0987521	0.317928	0.195831	0.133814	0.277306	0.290181	0.420366	0.738144	0.0997012	0.362571	0.74688	0.166643	0.715397	0.254497	2.89541	3.93328
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047470 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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