|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047467 ID=TCONS_00047467|Name=TCONS_00047467|organism=Clytia hemisphaerica|type=transcript|length=4307bpRun BLAST on NCBI protein sequence of TCONS_00047467-protein >TCONS_00047467-protein ID=TCONS_00047467-protein|Name=TCONS_00047467-protein|organism=Clytia hemisphaerica|type=polypeptide|length=658bp MVSKNHHHRRIHFAPDHHTHSRSLLTRNEVMKPAHIFRDQVNTVAQWFDQRun BLAST on NCBI transcript from alignment at scaffold_129:15906..52337- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047467 ID=TCONS_00047467|Name=TCONS_00047467|organism=Clytia hemisphaerica|type=transcript|length=36432bp|location=Sequence derived from alignment at scaffold_129:15906..52337- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_129:15906..52337- >TCONS_00047467 ID=TCONS_00047467|Name=TCONS_00047467|organism=Clytia hemisphaerica|type=CDS|length=15816bp|location=Sequence derived from alignment at scaffold_129:15906..52337- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00047467 vs. Swiss-Prot (Human)
Match: SMAG2 (Protein Smaug homolog 2 OS=Homo sapiens GN=SAMD4B PE=1 SV=1) HSP 1 Score: 273.092 bits (697), Expect = 2.240e-77 Identity = 209/564 (37.06%), Postives = 292/564 (51.77%), Query Frame = 2
Query: 299 IFRDQVNTVAQWFDQWNDIEQTIACYSLLKRLGPTQARFLSLVLDHTFRDSASEVQILEEEANGKEFLDSLCHESKEIAVXXXXXXXXXXXXGNDEVRHEYLNILPKILSHSLEYSIHEEECRQLLSLALVHPAFVPEERNSLTWWLGLLEDRGEKMREKRQRPPPGFNQHSPLSGTKSACELWGNTTQY-----------------SHAPVTNTLSYKTTLAPNGFKGQPPLAHTDSGISTSFDNGPVGLTY---PVTKGYRGDNDNEESRTRSKSFPVDPANMHMPLSPQSSVDSDDENSLRKMNSY--VGENFHPGMKDVQMWLKSLRLHKYSHIFTDITYDQMLNLTEDFLESKDVTKGARNKIILCXXXXXXXXXXXXXXXXXXXXXGKLPYVLNELKSILMSPIKT-------------PEHRKTGLEGEITGKPSFSEEDEDKIANTEDDGENKENEAETALTAVSSNTETNTENSVHKTTDENTPSE---AEEDLPSEIVRVMGKACTQILVTQPDEECCLTYLGLLERVLTHEAFSQNDKRRMQSWKVQCQKLAR 1876
+FRDQV +A WF WN+ EQT+A SLLKR+ TQARFL L L+H+ D +++ +LE EAN + ESKE V LL HLPLL PGN E + EY+ +L K+L++S+E + EE RQLLS AL+HPA E+RN+L WL LE+R R RP P ++ ++ + WG + H P + S + G ++ ++G+ P+ + P + G+ + E +F H PLSPQSSV S + S + GMKDV WLKSLRLHKY+ +F+ ++Y++M+ LTE LES++VTKGAR+KI L IQK++ER+ +L LEK+VL+ G L L EL+ I+++PIK K G GE P E T+ E K+ A E TD + P+ A+ D+PS+ RVMGK CTQ+LV++PDEE +YL L+E+ LTHEAF++ K+R+ SWK Q KL R
Sbjct: 2 MFRDQVGILAGWFKGWNECEQTVALLSLLKRVTRTQARFLQLCLEHSLAD-CNDIHLLESEANSAAIVSQWQQESKEKVVSLLLSHLPLLQPGNTEAKSEYMRLLQKVLAYSIESNAFIEESRQLLSYALIHPATTLEDRNALALWLSHLEER--LASGFRSRPEPSYH-------SRQGSDEWGGPAELGPGEAGPGWQDKPPRENGHVPFHPSSSVPPAINSIG-------SNANTGLPCQIHPSPLKRSMSLIPTSPQVPGEWPSPEELGARAAFTTP---DHAPLSPQSSVASSGSEQTEEQGSSRNTFQEDGSGMKDVPSWLKSLRLHKYAALFSQMSYEEMMTLTEQHLESQNVTKGARHKIALSIQKLRERQSVLKSLEKDVLEGGNLRNALQELQQIIITPIKAYSVLQATVAAATTTPTAKDGAPGE---PPLPGAEPPLAHPGTDKGTEAKDPPA----------VENYPPPPAPAPTDGSEPAPAPVADGDIPSQFTRVMGKVCTQLLVSRPDEENITSYLQLIEKCLTHEAFTETQKKRLLSWKQQVLKLLR 532 The following BLAST results are available for this feature:
BLAST of TCONS_00047467 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.