TCONS_00047466 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047466
Unique NameTCONS_00047466
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length406

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047466 ID=TCONS_00047466|Name=TCONS_00047466|organism=Clytia hemisphaerica|type=transcript|length=406bp
AAATTAACATATAACGTTAAAGTGCACTAAACCCATTTAACGCTATATGT
TAAATCACTGACTGAACATTCACGTAAGAGAATATGGCGTTAAGGGGGTG
GCAAGGcgggaattttttttgtggCGAATTTATAAATGGTAGGCACAGCT
GTGCTGCCTTGCTCCCGGATTCCTTGGCTTCTGCATCACCTGATACACTT
GATAGATTGCCCTCCCTGCATCACCTGATCAATACCCTGTAGCAATGGCA
GAAAATAACAGAGAGAAAGTAGAGAAAGGTAAccactatatatttttttg
gaCAAGGCTGTTCTAAATCCATGTTTATACCGTCATCTTCATCCCCCCTC
TCCCGGACGACAATTTTCAGCCCACCAACAGAAGCCCATACACCAGCAGT
AGCCAG
Run BLAST on NCBI

transcript from alignment at scaffold_128:201778..202183

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047466 ID=TCONS_00047466|Name=TCONS_00047466|organism=Clytia hemisphaerica|type=transcript|length=406bp|location=Sequence derived from alignment at scaffold_128:201778..202183 (Clytia hemisphaerica)
CTGGCTACTGCTGGTGTATGGGCTTCTGTTGGTGGGCTGAAAATTGTCGT
CCGGGAGAGGGGGGATGAAGATGACGGTATAAACATGGATTTAGAACAGC
CTTGtccaaaaaaatatatagtggTTACCTTTCTCTACTTTCTCTCTGTT
ATTTTCTGCCATTGCTACAGGGTATTGATCAGGTGATGCAGGGAGGGCAA
TCTATCAAGTGTATCAGGTGATGCAGAAGCCAAGGAATCCGGGAGCAAGG
CAGCACAGCTGTGCCTACCATTTATAAATTCGccacaaaaaaaattcccg
CCTTGCCACCCCCTTAACGCCATATTCTCTTACGTGAATGTTCAGTCAGT
GATTTAACATATAGCGTTAAATGGGTTTAGTGCACTTTAACGTTATATGT
TAATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030234XLOC_030234Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047466-exon-scaffold_128-1491911889:201778..202183TCONS_00047466-exon-scaffold_128-1491911889:201778..202183Clytia hemisphaericaexon
TCONS_00047466-exon-scaffold_128-1510915933:201778..202183TCONS_00047466-exon-scaffold_128-1510915933:201778..202183Clytia hemisphaericaexon
TCONS_00047466-exon-scaffold_128-1575043694:201778..202183TCONS_00047466-exon-scaffold_128-1575043694:201778..202183Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_128supercontigscaffold_128:201778..202183 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.191912	0.463068	0.433519	0.910551	0.563932	0.182455	0.839573	1.07795	1.24385	0	0	0	0	0	0	0	0	0	0	0.580064	0.517693	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047466 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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