TCONS_00047463 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047463
Unique NameTCONS_00047463
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length651

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047463 ID=TCONS_00047463|Name=TCONS_00047463|organism=Clytia hemisphaerica|type=transcript|length=651bp
GCTTCTAAGACTGGCTCCGAAGATTTATCAAATCTTTTCCCTGTACGTTT
GATTGGTAAGGTACTTGTAATGTCTCTAAAGTATTTATTGAATATGTTTA
CGATCTTTTTATCATCAGAGATAATGTCATCTTTCTCAGCAAGGACAATT
TTGCCTTGATATGTGCCTTTGTTTGTAAAATAAGGCTTGCATATATTCCA
GAGGGATTTTTCTTTGGTAGTATCAAtactcgaaaaatatttttttttta
ttttttgtttaattttactaCCAGATTTCTCTGTTTTTTATAGGCTTGTT
TATCCTCAGGAAGCTCTGTTTTTCTGGAAATGTTTTTTAAGCGAGAGCGC
TTCATAATTTGCTTTCTGAGTTCTTTTGTCCTGTGAGATTTGTCATTACC
CCTGATGGTCTTTTTCTTGATTGGTacatatgtttgtaaaatagaGGTAA
AAATTAACTCGAATTGTTTATAGTCTGTTGGCTGAAAAAACGCCAAGGTT
TGTGATAAATCTAAATTAAATTCTAATcctttaaatttagaaaaatctcT
GTATTGTATAGTTTGAGTAGGAAGTCTTTGATATCCCTCTTTAAACATTG
TTATTGGCATTAGATGAAAATCACTGAGGTCAGTTTCAATAGCATGGGTG
T
Run BLAST on NCBI

transcript from alignment at scaffold_128:172906..173556

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047463 ID=TCONS_00047463|Name=TCONS_00047463|organism=Clytia hemisphaerica|type=transcript|length=651bp|location=Sequence derived from alignment at scaffold_128:172906..173556 (Clytia hemisphaerica)
ACACCCATGCTATTGAAACTGACCTCAGTGATTTTCATCTAATGCCAATA
ACAATGTTTAAAGAGGGATATCAAAGACTTCCTACTCAAACTATACAATA
CAgagatttttctaaatttaaaggATTAGAATTTAATTTAGATTTATCAC
AAACCTTGGCGTTTTTTCAGCCAACAGACTATAAACAATTCGAGTTAATT
TTTACCtctattttacaaacatatgtACCAATCAAGAAAAAGACCATCAG
GGGTAATGACAAATCTCACAGGACAAAAGAACTCAGAAAGCAAATTATGA
AGCGCTCTCGCTTAAAAAACATTTCCAGAAAAACAGAGCTTCCTGAGGAT
AAACAAGCCTATAAAAAACAGAGAAATCTGGtagtaaaattaaacaaaaa
ataaaaaaaaaatatttttcgagtaTTGATACTACCAAAGAAAAATCCCT
CTGGAATATATGCAAGCCTTATTTTACAAACAAAGGCACATATCAAGGCA
AAATTGTCCTTGCTGAGAAAGATGACATTATCTCTGATGATAAAAAGATC
GTAAACATATTCAATAAATACTTTAGAGACATTACAAGTACCTTACCAAT
CAAACGTACAGGGAAAAGATTTGATAAATCTTCGGAGCCAGTCTTAGAAG
C
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030231XLOC_030231Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047463-exon-scaffold_128-1491911889:172906..173556TCONS_00047463-exon-scaffold_128-1491911889:172906..173556Clytia hemisphaericaexon
TCONS_00047463-exon-scaffold_128-1510915933:172906..173556TCONS_00047463-exon-scaffold_128-1510915933:172906..173556Clytia hemisphaericaexon
TCONS_00047463-exon-scaffold_128-1575043694:172906..173556TCONS_00047463-exon-scaffold_128-1575043694:172906..173556Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_128supercontigscaffold_128:172906..173556 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0802664	0.0782724	0	0.177827	0.216487	0.171071	0.20639	0.09661	0.135278	0.167563	0.162641	0.106914	0.320296	0.388069	0.774824	0.293472	0.241023	0.0617601	0.17065	0	1.16409	1.13561	0	0.0836703	0.344714	1.07677	0.110061	0	3.11813	2.45074
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047463 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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