TCONS_00047462 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047462
Unique NameTCONS_00047462
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length327

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047462 ID=TCONS_00047462|Name=TCONS_00047462|organism=Clytia hemisphaerica|type=transcript|length=327bp
gtcattttttacttttctagtTTGAACCTTCTGATATCAATAAAGATAGT
TGACATGCTACCGATATTTTGATTGTTCCAAACCATTCCCCGCTCGTGTG
CAGTCTGACACGGCACATTCAAACAAAGTGCACTGTATGTATGTCTGGTA
GACGAAATCCTCGTATCAACTACCGTATCTTCAACAATACTGGAGAGAAG
GTTCCTCAGCCGATCACGTCAACCTTCGATCCTCAGtcgatcaactcact
tcaagatcctcagccgatcaactcacttcaagatcctcagccgatcaact
cacttcaagatcctcagccgatcaact
Run BLAST on NCBI

transcript from alignment at scaffold_128:157073..157399

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047462 ID=TCONS_00047462|Name=TCONS_00047462|organism=Clytia hemisphaerica|type=transcript|length=327bp|location=Sequence derived from alignment at scaffold_128:157073..157399 (Clytia hemisphaerica)
agttgatcggctgaggatcttgaagtgagttgatcggctgaggatcttga
agtgagttgatcggctgaggatcttgaagtgagttgatcgaCTGAGGATC
GAAGGTTGACGTGATCGGCTGAGGAACCTTCTCTCCAGTATTGTTGAAGA
TACGGTAGTTGATACGAGGATTTCGTCTACCAGACATACATACAGTGCAC
TTTGTTTGAATGTGCCGTGTCAGACTGCACACGAGCGGGGAATGGTTTGG
AACAATCAAAATATCGGTAGCATGTCAACTATCTTTATTGATATCAGAAG
GTTCAAactagaaaagtaaaaaatgac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030230XLOC_030230Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047462-exon-scaffold_128-1491911889:157073..157399TCONS_00047462-exon-scaffold_128-1491911889:157073..157399Clytia hemisphaericaexon
TCONS_00047462-exon-scaffold_128-1510915933:157073..157399TCONS_00047462-exon-scaffold_128-1510915933:157073..157399Clytia hemisphaericaexon
TCONS_00047462-exon-scaffold_128-1575043694:157073..157399TCONS_00047462-exon-scaffold_128-1575043694:157073..157399Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_128supercontigscaffold_128:157073..157399 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.2348	17.0042	12.2546	5.66157	2.83805	2.88343	2.31916	5.06605	1.52008	2.19668	2.43675	2.40273	3.39914	3.11474	4.95076	3.84729	1.12846	1.38797	0.319592	1.33772	1.16272	0	2.75771	3.13394	5.8102	6.91395	0.412243	0.439957	0.667384	1.01994
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047462 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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