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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047461 ID=TCONS_00047461|Name=TCONS_00047461|organism=Clytia hemisphaerica|type=transcript|length=862bp
NGACATTCGAGATCTGAAATCTCAGCTGATGACGAACAGGAAGATCGATT
TCAAGGTATGTCCTGTCCAAGGACACAACTTCCATGGCAAGGTCGAGAGG
AAGATAAAGGAAATCAACCTTTCGATAGAGAAAAATGCTCACAACCATCG
ACTCTCGCTGATGCAGTGGGAAACCCTTGGAGCAACCATTGCTAATACGA
TAAATAATCTTCCATTGGCAATTGGGAACATAACAGGTGATTTTGAAGTT
ATGGACCTTATCACACCTAATCGTCTTCTACTTGGAAGAAACAACGAAAG
ATGTCCTGATGGTATTATGTTAACAAGTGAAAATCCGACGAAAATTTTAA
AGGAGAACCAGAAAATCTATGAAACCTGGTTTGAAGTTTGGTTACTCGTA
CACGTACCCAAGCTTATGAAGCAACAAAAGTGGTTTATCAATGACTCAAT
CAATGTTGGTGACGTTATCATATTTCGAAAAATCGACTCTATTATATGTC
AGTCATATACGTATGGTCAGGTTGTCAGTTTGGAGCTTTCGAATGATGGT
TTACCTCGAAAGCGATCATCCAATACAGAAATGCTAACCAAAATGTCTTT
CGTGAAACATCGAGAGCTGTACGTGGTTTGGTTGTAATACATAGAGCTGA
TGACTCTGATATAATGACTGGTCTTGGTAAGATTGCTACAAACATTGATC
TTTCCACAAAGTAAATAATTCCCCTTTTGAGGGGAGTGTAAAATGAACTA
ATGTCTAATTAGAAAAGGGGAAATAATTTCCTTCTTGCTAAAATATTTCA
CATACtttgtttcctataaaaagtatcattttctattttctttataagca
catttaTTTTGC Run BLAST on NCBI protein sequence of TCONS_00047461-protein >TCONS_00047461-protein ID=TCONS_00047461-protein|Name=TCONS_00047461-protein|organism=Clytia hemisphaerica|type=polypeptide|length=211bp
DIRDLKSQLMTNRKIDFKVCPVQGHNFHGKVERKIKEINLSIEKNAHNHR
LSLMQWETLGATIANTINNLPLAIGNITGDFEVMDLITPNRLLLGRNNER
CPDGIMLTSENPTKILKENQKIYETWFEVWLLVHVPKLMKQQKWFINDSI
NVGDVIIFRKIDSIICQSYTYGQVVSLELSNDGLPRKRSSNTEMLTKMSF
VKHRELYVVWL Run BLAST on NCBI transcript from alignment at scaffold_128:144983..145844 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047461 ID=TCONS_00047461|Name=TCONS_00047461|organism=Clytia hemisphaerica|type=transcript|length=862bp|location=Sequence derived from alignment at scaffold_128:144983..145844 (Clytia hemisphaerica)
GCAAAAtaaatgtgcttataaagaaaatagaaaatgatactttttatagg
aaacaaaGTATGTGAAATATTTTAGCAAGAAGGAAATTATTTCCCCTTTT
CTAATTAGACATTAGTTCATTTTACACTCCCCTCAAAAGGGGAATTATTT
ACTTTGTGGAAAGATCAATGTTTGTAGCAATCTTACCAAGACCAGTCATT
ATATCAGAGTCATCAGCTCTATGTATTACAACCAAACCACGTACAGCTCT
CGATGTTTCACGAAAGACATTTTGGTTAGCATTTCTGTATTGGATGATCG
CTTTCGAGGTAAACCATCATTCGAAAGCTCCAAACTGACAACCTGACCAT
ACGTATATGACTGACATATAATAGAGTCGATTTTTCGAAATATGATAACG
TCACCAACATTGATTGAGTCATTGATAAACCACTTTTGTTGCTTCATAAG
CTTGGGTACGTGTACGAGTAACCAAACTTCAAACCAGGTTTCATAGATTT
TCTGGTTCTCCTTTAAAATTTTCGTCGGATTTTCACTTGTTAACATAATA
CCATCAGGACATCTTTCGTTGTTTCTTCCAAGTAGAAGACGATTAGGTGT
GATAAGGTCCATAACTTCAAAATCACCTGTTATGTTCCCAATTGCCAATG
GAAGATTATTTATCGTATTAGCAATGGTTGCTCCAAGGGTTTCCCACTGC
ATCAGCGAGAGTCGATGGTTGTGAGCATTTTTCTCTATCGAAAGGTTGAT
TTCCTTTATCTTCCTCTCGACCTTGCCATGGAAGTTGTGTCCTTGGACAG
GACATACCTTGAAATCGATCTTCCTGTTCGTCATCAGCTGAGATTTCAGA
TCTCGAATGTCN Coding sequence (CDS) from alignment at scaffold_128:144983..145844 >TCONS_00047461 ID=TCONS_00047461|Name=TCONS_00047461|organism=Clytia hemisphaerica|type=CDS|length=636bp|location=Sequence derived from alignment at scaffold_128:144983..145844 (Clytia hemisphaerica)
TTACAACCAAACCACGTACAGCTCTCGATGTTTCACGAAAGACATTTTGG
TTAGCATTTCTGTATTGGATGATCGCTTTCGAGGTAAACCATCATTCGAA
AGCTCCAAACTGACAACCTGACCATACGTATATGACTGACATATAATAGA
GTCGATTTTTCGAAATATGATAACGTCACCAACATTGATTGAGTCATTGA
TAAACCACTTTTGTTGCTTCATAAGCTTGGGTACGTGTACGAGTAACCAA
ACTTCAAACCAGGTTTCATAGATTTTCTGGTTCTCCTTTAAAATTTTCGT
CGGATTTTCACTTGTTAACATAATACCATCAGGACATCTTTCGTTGTTTC
TTCCAAGTAGAAGACGATTAGGTGTGATAAGGTCCATAACTTCAAAATCA
CCTGTTATGTTCCCAATTGCCAATGGAAGATTATTTATCGTATTAGCAAT
GGTTGCTCCAAGGGTTTCCCACTGCATCAGCGAGAGTCGATGGTTGTGAG
CATTTTTCTCTATCGAAAGGTTGATTTCCTTTATCTTCCTCTCGACCTTG
CCATGGAAGTTGTGTCCTTGGACAGGACATACCTTGAAATCGATCTTCCT
GTTCGTCATCAGCTGAGATTTCAGATCTCGAATGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047461-exon-scaffold_128-1491911889:144983..145844 | TCONS_00047461-exon-scaffold_128-1491911889:144983..145844 | Clytia hemisphaerica | exon |
| TCONS_00047461-exon-scaffold_128-1510915933:144983..145844 | TCONS_00047461-exon-scaffold_128-1510915933:144983..145844 | Clytia hemisphaerica | exon |
| TCONS_00047461-exon-scaffold_128-1575043694:144983..145844 | TCONS_00047461-exon-scaffold_128-1575043694:144983..145844 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_128 | supercontig | scaffold_128:144983..145844 . |
Blast
The following BLAST results are available for this feature:
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