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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047459 ID=TCONS_00047459|Name=TCONS_00047459|organism=Clytia hemisphaerica|type=transcript|length=1041bp
CTGATCCTCTTGCTATTATGATAAACAACTCCCTATCCACAGGTGTTTTC
CCTGAACTTTTAAAACATGCTAAAGTAACTCCTCTCTTCAAAAGTGGACT
TAGAAATGATATAAAAAACTACAGGCCAATATCTGTTCTCCCAATTTTTG
ACaagatctttgaaaaaattgttcATGAAAGAATAACTAAATTTCTCAAC
AAAAATCACATTATATTCAAAGGACAGTTTGGTTTCCAAAAAGGTAAGTC
TACATCTTCTGCAGTTATTCATCTCACTGACATTATAGCTAGGTGCAAAG
CTAAAAAAGAAGTTGGATGTGCAATTTTTTTGGATCTGGCAAAAGCTTTT
GATACTGTAAATCACAAAATTCTCATTGACAAGCTTGATAGAATAGGTAT
CAGAGGCCCTGTACTATCCTGGTTTCAAAGCTACTTGACTAAGAGAAAAC
AAAGTGTCTCCTGTAATCATGTAAAGTCTGAACCCAGGTTCATCTCTCAT
GGTGTACCTCAAGGCTCAGTTTTAGGCCCCCTCCTGTTCTTGATATATGT
CAACGATTTAGCACTAAGTTCGTCTTTCTCACAAACATTGTTTGCTGATG
ACACATGTCTGTTCACGATTCATTCAGATCCTGAAATACTTCAAAATCTC
GTAAATACAGAACTCAAAAAAGTATCTGACTGGCTTGTTGCAAATCAACT
AACTTTAAATATCTCCAAGTCCAACTAtaacatctttggtgaaaacaAAA
CAGCTAACTTTCATGTCTCTATTTCAGGTCAATCTCTAAACAAAGTTAAC
GAAACAAAATATCTGGGTGTTGTTATTGATCACAAGTTGAACTGGAAAGA
ACATCTGAAAAGGCTACATACTAGAACCAAGCAAAATACAGGTATATTAC
GAAAGGTAGGCTGGTTCCTTCCACGAGAGAACCTTATATCTCTATACTTC
AGCCTTGTTAATTCACACCTAATCTATTGTATTTCTTCCTGGGGCTCTCC
TAATACAAATGGTTTAAATATCATTAATGAAACCCTTTCTA Run BLAST on NCBI protein sequence of TCONS_00047459-protein >TCONS_00047459-protein ID=TCONS_00047459-protein|Name=TCONS_00047459-protein|organism=Clytia hemisphaerica|type=polypeptide|length=346bp
DPLAIMINNSLSTGVFPELLKHAKVTPLFKSGLRNDIKNYRPISVLPIFD
KIFEKIVHERITKFLNKNHIIFKGQFGFQKGKSTSSAVIHLTDIIARCKA
KKEVGCAIFLDLAKAFDTVNHKILIDKLDRIGIRGPVLSWFQSYLTKRKQ
SVSCNHVKSEPRFISHGVPQGSVLGPLLFLIYVNDLALSSSFSQTLFADD
TCLFTIHSDPEILQNLVNTELKKVSDWLVANQLTLNISKSNYNIFGENKT
ANFHVSISGQSLNKVNETKYLGVVIDHKLNWKEHLKRLHTRTKQNTGILR
KVGWFLPRENLISLYFSLVNSHLIYCISSWGSPNTNGLNIINETLS Run BLAST on NCBI transcript from alignment at scaffold_128:130042..131082 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047459 ID=TCONS_00047459|Name=TCONS_00047459|organism=Clytia hemisphaerica|type=transcript|length=1041bp|location=Sequence derived from alignment at scaffold_128:130042..131082 (Clytia hemisphaerica)
TAGAAAGGGTTTCATTAATGATATTTAAACCATTTGTATTAGGAGAGCCC
CAGGAAGAAATACAATAGATTAGGTGTGAATTAACAAGGCTGAAGTATAG
AGATATAAGGTTCTCTCGTGGAAGGAACCAGCCTACCTTTCGTAATATAC
CTGTATTTTGCTTGGTTCTAGTATGTAGCCTTTTCAGATGTTCTTTCCAG
TTCAACTTGTGATCAATAACAACACCCAGATATTTTGTTTCGTTAACTTT
GTTTAGAGATTGACCTGAAATAGAGACATGAAAGTTAGCTGTTTtgtttt
caccaaagatgttaTAGTTGGACTTGGAGATATTTAAAGTTAGTTGATTT
GCAACAAGCCAGTCAGATACTTTTTTGAGTTCTGTATTTACGAGATTTTG
AAGTATTTCAGGATCTGAATGAATCGTGAACAGACATGTGTCATCAGCAA
ACAATGTTTGTGAGAAAGACGAACTTAGTGCTAAATCGTTGACATATATC
AAGAACAGGAGGGGGCCTAAAACTGAGCCTTGAGGTACACCATGAGAGAT
GAACCTGGGTTCAGACTTTACATGATTACAGGAGACACTTTGTTTTCTCT
TAGTCAAGTAGCTTTGAAACCAGGATAGTACAGGGCCTCTGATACCTATT
CTATCAAGCTTGTCAATGAGAATTTTGTGATTTACAGTATCAAAAGCTTT
TGCCAGATCCAAAAAAATTGCACATCCAACTTCTTTTTTAGCTTTGCACC
TAGCTATAATGTCAGTGAGATGAATAACTGCAGAAGATGTAGACTTACCT
TTTTGGAAACCAAACTGTCCTTTGAATATAATGTGATTTTTGTTGAGAAA
TTTAGTTATTCTTTCATgaacaattttttcaaagatcttGTCAAAAATTG
GGAGAACAGATATTGGCCTGTAGTTTTTTATATCATTTCTAAGTCCACTT
TTGAAGAGAGGAGTTACTTTAGCATGTTTTAAAAGTTCAGGGAAAACACC
TGTGGATAGGGAGTTGTTTATCATAATAGCAAGAGGATCAG Coding sequence (CDS) from alignment at scaffold_128:130042..131082 >TCONS_00047459 ID=TCONS_00047459|Name=TCONS_00047459|organism=Clytia hemisphaerica|type=CDS|length=1038bp|location=Sequence derived from alignment at scaffold_128:130042..131082 (Clytia hemisphaerica)
AGAAAGGGTTTCATTAATGATATTTAAACCATTTGTATTAGGAGAGCCCC
AGGAAGAAATACAATAGATTAGGTGTGAATTAACAAGGCTGAAGTATAGA
GATATAAGGTTCTCTCGTGGAAGGAACCAGCCTACCTTTCGTAATATACC
TGTATTTTGCTTGGTTCTAGTATGTAGCCTTTTCAGATGTTCTTTCCAGT
TCAACTTGTGATCAATAACAACACCCAGATATTTTGTTTCGTTAACTTTG
TTTAGAGATTGACCTGAAATAGAGACATGAAAGTTAGCTGTTTtgttttc
accaaagatgttaTAGTTGGACTTGGAGATATTTAAAGTTAGTTGATTTG
CAACAAGCCAGTCAGATACTTTTTTGAGTTCTGTATTTACGAGATTTTGA
AGTATTTCAGGATCTGAATGAATCGTGAACAGACATGTGTCATCAGCAAA
CAATGTTTGTGAGAAAGACGAACTTAGTGCTAAATCGTTGACATATATCA
AGAACAGGAGGGGGCCTAAAACTGAGCCTTGAGGTACACCATGAGAGATG
AACCTGGGTTCAGACTTTACATGATTACAGGAGACACTTTGTTTTCTCTT
AGTCAAGTAGCTTTGAAACCAGGATAGTACAGGGCCTCTGATACCTATTC
TATCAAGCTTGTCAATGAGAATTTTGTGATTTACAGTATCAAAAGCTTTT
GCCAGATCCAAAAAAATTGCACATCCAACTTCTTTTTTAGCTTTGCACCT
AGCTATAATGTCAGTGAGATGAATAACTGCAGAAGATGTAGACTTACCTT
TTTGGAAACCAAACTGTCCTTTGAATATAATGTGATTTTTGTTGAGAAAT
TTAGTTATTCTTTCATgaacaattttttcaaagatcttGTCAAAAATTGG
GAGAACAGATATTGGCCTGTAGTTTTTTATATCATTTCTAAGTCCACTTT
TGAAGAGAGGAGTTACTTTAGCATGTTTTAAAAGTTCAGGGAAAACACCT
GTGGATAGGGAGTTGTTTATCATAATAGCAAGAGGATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047459-exon-scaffold_128-1491911889:130042..131082 | TCONS_00047459-exon-scaffold_128-1491911889:130042..131082 | Clytia hemisphaerica | exon |
| TCONS_00047459-exon-scaffold_128-1510915933:130042..131082 | TCONS_00047459-exon-scaffold_128-1510915933:130042..131082 | Clytia hemisphaerica | exon |
| TCONS_00047459-exon-scaffold_128-1575043694:130042..131082 | TCONS_00047459-exon-scaffold_128-1575043694:130042..131082 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_128 | supercontig | scaffold_128:130042..131082 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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