TCONS_00047457 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047457
Unique NameTCONS_00047457
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length466

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047457 ID=TCONS_00047457|Name=TCONS_00047457|organism=Clytia hemisphaerica|type=transcript|length=466bp
CCCACACCCTACAATTTTCCTCAATAATAATGTCGACGTTGATGTTGCAA
ttggaaataaaaacaaaactactAGGAGACGTCTAagctataataataat
aatgataatgatgatgatgcTGTTGTTCCCAACCCTACTGATGTCCCAAA
TCCTGTTGTTGATGATTCATCCCTAGCTATCGATTTTGATGTTTCACCTG
GACCCATTCCATCTACACGTGATGAATCTCCTAATAATGAACCCATAATT
AATAATGCAAACCGTCAATGTCTTTTTCTCCCTTCTTTCTTTGTTTTCCG
TCATGGTACGTACCGTAATATGTTTTTTTCTTGCATGGTTACTGTAGCTA
GCTTACTTTGTTTTGGTTGGATGCTTAAATCTAAATATTTTGCTGCTTTG
AAAGAAATTAATAAACTCAAAGATGGTCTTCACAAGAAAGAGCTGCTGCT
GACAAGATATCGATCG
Run BLAST on NCBI

protein sequence of TCONS_00047457-protein

>TCONS_00047457-protein ID=TCONS_00047457-protein|Name=TCONS_00047457-protein|organism=Clytia hemisphaerica|type=polypeptide|length=155bp
PHPTIFLNNNVDVDVAIGNKNKTTRRRLSYNNNNDNDDDAVVPNPTDVPN
PVVDDSSLAIDFDVSPGPIPSTRDESPNNEPIINNANRQCLFLPSFFVFR
HGTYRNMFFSCMVTVASLLCFGWMLKSKYFAALKEINKLKDGLHKKELLL
TRYRS
Run BLAST on NCBI

transcript from alignment at scaffold_128:111089..111554

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047457 ID=TCONS_00047457|Name=TCONS_00047457|organism=Clytia hemisphaerica|type=transcript|length=466bp|location=Sequence derived from alignment at scaffold_128:111089..111554 (Clytia hemisphaerica)
CGATCGATATCTTGTCAGCAGCAGCTCTTTCTTGTGAAGACCATCTTTGA
GTTTATTAATTTCTTTCAAAGCAGCAAAATATTTAGATTTAAGCATCCAA
CCAAAACAAAGTAAGCTAGCTACAGTAACCATGCAAGAAAAAAACATATT
ACGGTACGTACCATGACGGAAAACAAAGAAAGAAGGGAGAAAAAGACATT
GACGGTTTGCATTATTAATTATGGGTTCATTATTAGGAGATTCATCACGT
GTAGATGGAATGGGTCCAGGTGAAACATCAAAATCGATAGCTAGGGATGA
ATCATCAACAACAGGATTTGGGACATCAGTAGGGTTGGGAACAACAgcat
catcatcattatcattattattattatagctTAGACGTCTCCTagtagtt
ttgtttttatttccaaTTGCAACATCAACGTCGACATTATTATTGAGGAA
AATTGTAGGGTGTGGG

Coding sequence (CDS) from alignment at scaffold_128:111089..111554

>TCONS_00047457 ID=TCONS_00047457|Name=TCONS_00047457|organism=Clytia hemisphaerica|type=CDS|length=465bp|location=Sequence derived from alignment at scaffold_128:111089..111554 (Clytia hemisphaerica)
CGATCGATATCTTGTCAGCAGCAGCTCTTTCTTGTGAAGACCATCTTTGA
GTTTATTAATTTCTTTCAAAGCAGCAAAATATTTAGATTTAAGCATCCAA
CCAAAACAAAGTAAGCTAGCTACAGTAACCATGCAAGAAAAAAACATATT
ACGGTACGTACCATGACGGAAAACAAAGAAAGAAGGGAGAAAAAGACATT
GACGGTTTGCATTATTAATTATGGGTTCATTATTAGGAGATTCATCACGT
GTAGATGGAATGGGTCCAGGTGAAACATCAAAATCGATAGCTAGGGATGA
ATCATCAACAACAGGATTTGGGACATCAGTAGGGTTGGGAACAACAgcat
catcatcattatcattattattattatagctTAGACGTCTCCTagtagtt
ttgtttttatttccaaTTGCAACATCAACGTCGACATTATTATTGAGGAA
AATTGTAGGGTGTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030225XLOC_030225Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047457-exon-scaffold_128-1491911889:111089..111554TCONS_00047457-exon-scaffold_128-1491911889:111089..111554Clytia hemisphaericaexon
TCONS_00047457-exon-scaffold_128-1510915933:111089..111554TCONS_00047457-exon-scaffold_128-1510915933:111089..111554Clytia hemisphaericaexon
TCONS_00047457-exon-scaffold_128-1575043694:111089..111554TCONS_00047457-exon-scaffold_128-1575043694:111089..111554Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047457-proteinTCONS_00047457-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_128supercontigscaffold_128:111089..111554 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.56114	1.97276	2.25028	2.16521	33.2317	21.1635	20.5482	23.2442	9.64797	12.6246	8.85425	7.69193	5.1866	3.08909	1.84643	1.95828	2.11608	3.86255	1.84619	1.87108	4.24644	3.12027	1.2933	4.94876	4.1213	9.44781	3.62483	3.70231	3.1765	3.27525
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047457 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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