TCONS_00047455 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047455
Unique NameTCONS_00047455
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length795

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047455 ID=TCONS_00047455|Name=TCONS_00047455|organism=Clytia hemisphaerica|type=transcript|length=795bp
CTCGTTGAGAGAAAGTTTCTTAGGTGTTTCTAAGGGAACCCGTATAGTAT
ATGTACAGTGAAGAGGGGAGAAAGGGGAGAAAGGAGAGTGTATTGTTTGA
ATGACACCATTGCTCTTGTTCTTTGAGTACAAGGTGGGAGGTCTAATaaa
tatttggaaatttttgtgTATATGGATAATCAATATTATAAGCAATCTTA
TTCTTGAAGGAATGtaattgactttttttcttggacagttctttgagaaa
aaagataatTGCACCCTCATTAGAAAATAAAGAATTAttaaaaaagagag
agaaaaagcAGTCTGCATCACTTCAAATGTGAGACACAATAAGTGTGTAT
GAACACTTTTATAAGTCatttaatgtttattttaaAAGTATCTTAAAAAG
TATAATCTCTTTCTAATTTAACTTTGTTTACCCAAGGGActttaataaaa
ctttttttattttaagtttcttGGCTTACCCAAAGCTGCTTCTTATTTTG
TTGATCACTCTCTCagaaaacatataaaaattAAACTCCTATTCTTTTCC
AAAATAATgtttataaacataaaaactaCAACGAATTTGAACATCCTGAA
GCTGGGAATTCCCCAGcgtattttttaacttttaaaacataagtagtacc
gtcaactgctctaacttgggacaattggttgaaacatgggactggtcttg
atatctggcctgtattttcacttactgttaaatttcattgacaacaaatt
tgttttgataactccgccaagtttatcaatcatacttcttcgttc
Run BLAST on NCBI

protein sequence of TCONS_00047455-protein

>TCONS_00047455-protein ID=TCONS_00047455-protein|Name=TCONS_00047455-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
MTYKSVHTHLLCLTFEVMQTAFSLSFLIILYFLMRVQLSFFSKNCPRKKV
NYIPSRIRLLIILIIHIHKNFQIFIRPPTLYSKNKSNGVIQTIHSPFSPF
SPLHCTYTIRVPLETPKKLSLNE
Run BLAST on NCBI

transcript from alignment at scaffold_128:65818..66612

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047455 ID=TCONS_00047455|Name=TCONS_00047455|organism=Clytia hemisphaerica|type=transcript|length=795bp|location=Sequence derived from alignment at scaffold_128:65818..66612 (Clytia hemisphaerica)
gaacgaagaagtatgattgataaacttggcggagttatcaaaacaaattt
gttgtcaatgaaatttaacagtaagtgaaaatacaggccagatatcaaga
ccagtcccatgtttcaaccaattgtcccaagttagagcagttgacggtac
tacttatgttttaaaagttaaaaaatacgCTGGGGAATTCCCAGCTTCAG
GATGTTCAAATTCGTTGtagtttttatgtttataaacATTATTTTGGAAA
AGAATAGGAGTTTaatttttatatgttttctGAGAGAGTGATCAACAAAA
TAAGAAGCAGCTTTGGGTAAGCCaagaaacttaaaataaaaaaagtttta
ttaaagTCCCTTGGGTAAACAAAGTTAAATTAGAAAGAGATTATACTTTT
TAAGATACTTttaaaataaacattaaatGACTTATAAAAGTGTTCATACA
CACTTATTGTGTCTCACATTTGAAGTGATGCAGACTgctttttctctctc
ttttttaaTAATTCTTTATTTTCTAATGAGGGTGCAattatcttttttct
caaagaactgtccaagaaaaaaagtcaattaCATTCCTTCAAGAATAAGA
TTGCTTATAATATTGATTATCCATATAcacaaaaatttccaaatatttAT
TAGACCTCCCACCTTGTACTCAAAGAACAAGAGCAATGGTGTCATTCAAA
CAATACACTCTCCTTTCTCCCCTTTCTCCCCTCTTCACTGTACATATACT
ATACGGGTTCCCTTAGAAACACCTAAGAAACTTTCTCTCAACGAG

Coding sequence (CDS) from alignment at scaffold_128:65818..66612

>TCONS_00047455 ID=TCONS_00047455|Name=TCONS_00047455|organism=Clytia hemisphaerica|type=CDS|length=369bp|location=Sequence derived from alignment at scaffold_128:65818..66612 (Clytia hemisphaerica)
atGACTTATAAAAGTGTTCATACACACTTATTGTGTCTCACATTTGAAGT
GATGCAGACTgctttttctctctcttttttaaTAATTCTTTATTTTCTAA
TGAGGGTGCAattatcttttttctcaaagaactgtccaagaaaaaaagtc
aattaCATTCCTTCAAGAATAAGATTGCTTATAATATTGATTATCCATAT
AcacaaaaatttccaaatatttATTAGACCTCCCACCTTGTACTCAAAGA
ACAAGAGCAATGGTGTCATTCAAACAATACACTCTCCTTTCTCCCCTTTC
TCCCCTCTTCACTGTACATATACTATACGGGTTCCCTTAGAAACACCTAA
GAAACTTTCTCTCAACGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030223XLOC_030223Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047455-exon-scaffold_128-1491911889:65818..66612TCONS_00047455-exon-scaffold_128-1491911889:65818..66612Clytia hemisphaericaexon
TCONS_00047455-exon-scaffold_128-1510915933:65818..66612TCONS_00047455-exon-scaffold_128-1510915933:65818..66612Clytia hemisphaericaexon
TCONS_00047455-exon-scaffold_128-1575043694:65818..66612TCONS_00047455-exon-scaffold_128-1575043694:65818..66612Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047455-proteinTCONS_00047455-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_128supercontigscaffold_128:65818..66612 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.304063	0.295403	0.480167	0.40301	0.653157	0.19355	1.08971	0.874905	0.752752	0.44451	0.24535	0.443872	0.966612	0.711623	0.515668	0.737855	0.454488	0.791921	1.22613	1.61918	0.87892	0.600466	0.208326	0.568185	0.585476	0.348322	1.99445	2.40348	1.54641	1.51148
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047455 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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