TCONS_00047445 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047445
Unique NameTCONS_00047445
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1043

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047445 ID=TCONS_00047445|Name=TCONS_00047445|organism=Clytia hemisphaerica|type=transcript|length=1043bp
cttatttttctcaagaatatcagtaaaatcaacaattcattttttttcat
atcgAATTTCATTAGGAAAATGGTATTGTGtcaaatttgaggaaaagtgg
GAGTAATAAAAGTAGATTACGAACCATTATAAGGAACATTGAAAGAACGA
TCACGTCTCGGTAAAAAGATAAGAAAGAAGAAATGCCTACAGctaatttt
gcaattttcattttagcaACAATCTTATCACACAAGCACAACGGATGCAA
CGCTCAAACTTGCGGTCATGTGACTATTAGCCAATCACGTGTCATCAATG
GTGTGACGTCACAAGAAGGACAATGGCCTTGGCAAGCACAAATCAAACGG
ACAGTTTTTGGTGAGCAACACCATTGCGGGGGTACGTTGATTCATCCGAT
GTATGTTTTGACTGCCGCTCATTGTTTGATGGACTATAGAGTACCGTTTC
ATTATCAAATCACACTTGGGAAACATGACCTACAAACGAAGGGACCAAAC
GAACAAATTTTGATGGGAAGTGAATTGAAGATCCATCCAATGTTCAATAG
ACGTACATATGATAACGATATCGCACTCATCAAATTGAATAAACCAGCTG
TTTTAACTGATAAAGTAAATATTGCGTGTATTCCACCGAACGCTGTTTCT
CCGAAACCAGTTCTCGCAGGTCGAAACTGTTTTGTATCAGGCTGGGGATT
GAAGTCATCGACATTGGCAACAAGATATTTACTTCATGGAGATGTTCCTA
TCATCACAAATGCTGAATGTGCAAAAAAAATGAATCAAGTCAATTTAAAT
GGTGGAGTGACTGACAATATGTTATGTGCAGGTGGAGATGGAAAAGCTAG
TTGCCATGGCGACAGCGGCGGGCCGTTGGTTTGCAGTGAAAGTGACGGTC
GTTTTGTTGTACAAGGGGTGGTCAGCTGGGGCCATCCACAATGTGCGGAT
GGTTACTATGGTGTTTTTGCACGTGTTGaccaatatggcggatggataAG
CTCAATTTTATATCCTGATAAATATTAAGAGATCGGTAAATTA
Run BLAST on NCBI

protein sequence of TCONS_00047445-protein

>TCONS_00047445-protein ID=TCONS_00047445-protein|Name=TCONS_00047445-protein|organism=Clytia hemisphaerica|type=polypeptide|length=281bp
MPTANFAIFILATILSHKHNGCNAQTCGHVTISQSRVINGVTSQEGQWPW
QAQIKRTVFGEQHHCGGTLIHPMYVLTAAHCLMDYRVPFHYQITLGKHDL
QTKGPNEQILMGSELKIHPMFNRRTYDNDIALIKLNKPAVLTDKVNIACI
PPNAVSPKPVLAGRNCFVSGWGLKSSTLATRYLLHGDVPIITNAECAKKM
NQVNLNGGVTDNMLCAGGDGKASCHGDSGGPLVCSESDGRFVVQGVVSWG
HPQCADGYYGVFARVDQYGGWISSILYPDKY
Run BLAST on NCBI

transcript from alignment at scaffold_128:44158..50323-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047445 ID=TCONS_00047445|Name=TCONS_00047445|organism=Clytia hemisphaerica|type=transcript|length=6166bp|location=Sequence derived from alignment at scaffold_128:44158..50323- (Clytia hemisphaerica)
CTTATTTTTCTCAAGAATATCAGTAAAATCAACAATTCATTTTTTTTCAT
ATCGAATTTCATTAGGAAAATGGTATTGTGTCAAATTTGAGGAAAAGTGG
GAGTAATAAAAGTAGATTACGAACCATTATAAGGAACATTGAAAGAACGA
TCACGTCTCGGTAAAAAGATAAGAAAGAAGAAATGCCTACAGCTAATTTT
GCAATTTTCATTTTAGCAAGTAAGTGTTCGTTGTTAAATCTTAAATTACT
GCACTGAATACACTCTTCTAGAGATGCATAAATTTATTGANGTATTTTAT
CAGTTTTCTTAACTGCATATCAAATCACTCTACAGCAATCTTATCACACA
AGCACAACGGATGCAACGCTCAAACTTGCGGTCATGTGACTATTAGCCAA
TCACGTGTCATCAATGGTGTGACGTCACAAGAAGGACAATGGCCTTGGCA
AGCACAAATCAAACGGACAGTTTTTGGTGAGCAACACCATTGCGGGGGTA
CGTTGATTCATCCGATGTATGTTTTGACTGCCGCTCATTGTTTGATGGAC
TATAGAGTACCGTTTCATTATCAAATCACACTTGGGAAACATGACCTACA
AACGTAAGTATACACCTTTTTTTTATTAAAACATCAACAATTTTTGAAGC
CTTTGGATGTTCTTAACTTTTTGAGTTTTAAGCCTAAAATGTTCTTAAGC
TTAACATGTTTTTATTTTCGCCATTTTTATAGTATTTTTGTCCATTTTCT
TAAGAAATCGAGTGTTTTAGAGTCTTAAAATGTTCTAAACATGCTTTTAA
CACTTTGGCCATCGAAGCCTTATGTTCTTATATAGTTTGTTCTTATAAAA
AAACGTGTACTGTATTGTATAATTTATACGACAAGCGTGCACAACTTATT
TTCATCCCATTACTCCAAATTTCGTAATATATTCAAGAGAAATTGTATTT
AGACTGATAAGTTATGGCGAGCGGAATTAGTTTTCTAAGAAGGCTTGTGT
GTGTCTCGTAATCTGATCTAGACTACTGCTATCTCCTAACGGGTTCGTGT
TTTTTAAAATACCTGCACGAAGAGCGAGGTCAGCAATTTACAACTTAAGT
ATTAACCTTAACCCCTCAAAAACAACAGTACAATCATGGTCAAAATATAT
TGACATTTTAGTGTATTTTAACGTTTTTCTGAATAAAAAGTAAAAAGAAT
AAAAAGTTCGGGCGAGAATTGCTATTTTAGCACTTCCATTTTCTTCCATT
GAATATTTCGATTTAAGAGGGGTTCGGTGGCTTCTACGCTATATTCCAAG
AAGTCTTATTCGAGCAAATTTGAGCTTTTAAATCCTGAGATCCTAAGATC
CTAAGTTTTAAGTCTCATGTTAAAACTCAGAGTTAAAACTCTACTTTCCA
GATGTAGTTTAACGCGCTTAAAATCATTTGTGGTGTTATTTAAAATTTCG
CCGGGAAATCCCTTTTGTCTCAAATATTTTGTCCATGATTGTAGTATATA
GTAACAGTTTGAAAAGAGTACGAATCCGCGTTTGAGAATACCNAAACAAC
ACAATTATCATTGTGAATATGTAATTTTATAGCAATGAAATCTGTTTGAA
AACGAGGACAACAATAAATTTATGCATCTCGAGAAGAGTGTATTCTCATT
TAAAAAAGTGCATTACAGCACCCGTTCCCTTCGTGTTACCGGCTTTTTGT
TGCTTATTGAGCGCCAGGGATGATTCTCTGACGTCCATCAGTTACGAAAA
TAATGCCTAAGATATACAGGGCAGGACGAGGTTCGGAGAAAGAAATGATT
AGGTCGGGGTTTGAGTCATTCTCTGGTGTTTAGAAAGCGATTGAAAATTA
GATCTTTAAGAGATTATAAAGAATGAAAGAACTAATTTCACTTAATCGAA
TCAAGTAGAGGAGTAGTCAAAAAATGCTCGCCTGAAAATTAATAGGTCGC
GGTAGGTTTAACATTAAAATTAAATTGTATTTTATCAGTTTTCTTAACTG
CATATCAAATCACTCTACAGCAATCTTATCACACAAGCACAACGGATGCA
ACGCTCAAACTTGCGGTCATGTGACTATTAGCCAATCACGTGTCATCAAT
GGTGTGACGTCACAAGAAGGACAATGGCCTTGGCAAGCACAAATCAAACG
GACAGTTTTTGGTGAGCAACACCATTGCGGGGGTACGTTGATTCATCCGA
TGTATGTTTTGACTGCCGCTCATTGTTTGATGGACTATAGAGTACCGTTT
CATTATCAAATCACACTTGGGAAACATGACCTACAAACGTAAGTATACAC
CTTTTTTTTATTAAAACATCAACAATTTTTGAAGCCTTTGGATGTTCTTA
ACTTTTTGAGTTTTAAGCCTAAAATGTTCTTAAGCTTAACATGTTTTTAT
TTTCGCCATTTTTATAGTATTTTTGTCCATTTTCTTAAGAAATCGAGTGT
TTTAGAGTCTTAAAATGTTCTAAACATGCTTTTAACACTTTGGCCATCGA
AGCCTTATGTTCTTATATAGTTTGTTCTTATAAAAAAACGTGTACTGTAT
TGTATAATTTATACGACAAGCGTGCACAACTTATTTTCATCCCATTACTC
CAAATTTCGTAATATATTCAAGAGAAATTGTATTTAGACTGATAAGTTAT
GGCGAGCGGAATTAGTTTTCTAAGAAGGCTTGTGTGTGTCTCGTAATCTG
ATCTAGACTACTGCTATCTCCTAACGGGTTCGTGTTTTTTAAAATACCTG
CACGAAGAGCGAGGTCAGCAATTTACAACTTAAGTATTAACCTTAACCCC
TCAAAAACAACAGTACAATCATGGTCAAAATATATTGACATTTTAGTGTA
TTTTAACGTTTTTCTGAATAAAAAGTAAAAAGAATAAAAAGTTCGGGCGA
GAATTGCTATTTTAGCACTTCCATTTTCTTCCATTGAATATTTCGATTTA
AGAGGGGTTCGGTGGCTTCTACGCTATATTCCAAGAAGTCTTATTCGAGC
AAATTTGAGCTTTTAAATCCTGAGATCCTAAGATCCTAAGTTTTAAGTCT
CATGTTAAAACTCAGAGTTAAAACTCTACTTTCCAGATGTAGTTTAACGC
GCTTAAAATCATTTGTGGTGTTATTTAAAATTTCGCCGGGAAATCCCTTT
TGTCTCAAATATTTTGTCCATGATTGTAGTATATAGTAACAGTTTGAAAA
GAGTACGAATCCGCGTTTGAGAATACCAGCAACAAGTCTCAATCACCTAG
ACCTATCGAACTGGAGTGTACACGTTGTTTGACTTTCGACCTTTGAATGA
TCCCCTGCTAAGGGGACTAAAAGAATGGAAAATGAGAAAATATTGTGAAA
TTTAAGACCCTTGATAGGACTAATTTTGACTAGTAATTTGATCAAATTCC
AATCAGTTGAAATTTCCCTGTTTTTTCGACTTTTTGGAACTGAGATTTAA
TTTCAGACTTTTCAAACCCTTTTCAATTAGGGACCAGGTTATAAAAAGGT
ACCCAAGGGTCAGCACATACCCGTGGCTTTCACTTGCCAGGCAAACATAA
CCTCTACTATTGTATTTTTAGGAAGGGACCAAACGAACAAATTTTGATGG
GAAGTGAATTGAAGATCCATCCAATGTTCAATAGACGTACATATGATAAC
GATATCGCACTCATCAAATTGAATAAACCAGCTGTTTTAACTGATAAAGT
AAATATTGCGTGTATTCCACCGAACGCTGTTTCTCCGAAACCAGTTCTCG
CAGGTATACATTGTGCTCTCGTTTATTCGAACGTTTCAACATCTATTAAC
CGAACTTTCTATAATTCAAAGTAACTGTCGGACTCCGTCAATAGTAGACT
AGTGAAACCACGTCGTTGTATTTCGCCGCAGCTTACTTCCACGCAGTAAC
ACGCAATCCCGGTACAAGCGTTCTTCCCAAGCCTTAGAAAGCAAGAGATA
ATCCACATTTTCACAAGCATAAAATAGTATAACTAGATCAATTATTACAT
TACAATAGTAAAATTATTTGCTTTCTCTCACCGTAGGTCGAAACTGTTTT
GTATCAGGCTGGGGATTGAAGTCATCGACATTGGCAACAAGATATTTACT
TCATGGAGATGTTCCTATCATCACAAATGCTGAATGTGCAAAAAGTGAGA
TTTTCGTTTAGATTCTTTAAAACCAATCTTCCTCACCTACAAGGCGAATA
TTTAACGAAATCTTCTAGATATCTTTCAAGATTCGTCTACAAAAATAGTT
TTTGATAAAGATTGATTGAATGAAGCTTTGTTCACTTAGAACGGAGAGAC
TTTTCAACTACAGCATACCTATGAATAAATATACTGAGCCTGCCATCTTC
ATACAGACATCCCATCACAGATCAGGTGGAATTTTATCAGCCCACGTATC
ACCCACTGGGGATAAAAATAATGGACCAAAACACGATGGGGATTGATATT
CCCATGTTTTTTTATAGCTGGGGATTTGAACTCTATTTTGTTTTCTAGCC
AGAAAATTCAGTGAAGATGGAAAAAATAGCACAATATTTTGCAGTGGGTA
TTTGCTTATCTGGTTATTTTCAGTGGGAAAAAAAATTAGAGTATATTTTG
CACCGGGACGATATTTTGGCCAATTTTTCCAGTGGGAAGGGTTCCCAGAT
ACAGATAACACGTGCCCTAAAACATCAAATACGTTTTATCCCTAAAACAT
CAAATACGTTTTATCTATAGGAAATTATGTGACGTGTCTCACGGTTTTCT
TCATAAGTATCTATAAGCGACACTCACGCGAAGTCTTGTGTATAGCCCCA
TTCTTGCCTTAAGGGCTCTGACCATAGTGAATTTTTCATAATTGCCGTGT
TTAAAATGTGTTTTCTGATTGATGTAACCAACAAAACTATGGCATGTTAT
ACATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTTCGT
CTCGAAATCTTCAAAATAGTGGTTTTTCATCAATTTTTCATCTGGATTTT
GCTTAAAAAAACAGTCATAACTTTTGACACATCATTTTAGAAAAATTTAA
AATAGTTCAATTCTTTGCGGACAGTGTAAAGAAATTTTAAAACAAAAAGG
TTAATTACCCATTAAAACTTAGCACTTTTTATAAAATAAGGTGATGCAAC
ATATTATTAACGTCTTTTTAAAGTTCATAACGTNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNATTTATAAAGGCAATTCTTTGTTAAAAG
TGTTAAAGAACCTAAAACATAACTTTTATGTTCAAATACTAAAATCAATT
TTCCGACTATGGTCAGAGCCCTTAAACATCACAAATATATTCCTTTTTAG
AAATGAATCAAGTCAATTTAAATGGTGGAGTGACTGACAATATGTTATGT
GCAGGTGGAGATGGAAAAGCTAGTTGCCATGGCGACAGCGGCGGGCCGTT
GGTTTGCAGTGAAAGTGACGGTCGTTTTGTTGTACAAGGGGTGGTCAGCT
GGGGCCATCCACAATGTGCGGATGGTTACTATGGTGTTTTTGCACGTGTT
GACCAATATGGCGGATGGATAAGCTCAATTTTATATCCTGATAAATATTA
AGAGATCGGTAAATTA

Coding sequence (CDS) from alignment at scaffold_128:44158..50323-

>TCONS_00047445 ID=TCONS_00047445|Name=TCONS_00047445|organism=Clytia hemisphaerica|type=CDS|length=4230bp|location=Sequence derived from alignment at scaffold_128:44158..50323- (Clytia hemisphaerica)
AAATGAATCAAGTCAATTTAAATGGTGGAGTGACTGACAATATGTTATGT
GCAGGTGGAGATGGAAAAGCTAGTTGCCATGGCGACAGCGGCGGGCCGTT
GGTTTGCAGTGAAAGTGACGGTCGTTTTGTTGTACAAGGGGTGGTCAGCT
GGGGCCATCCACAATGTGCGGATGGTTACTATGGTGTTTTTGCACGTGTT
GACCAATATGGCGGATGGATAAGCTCAATTTTATATCCTGATAAATATTA
AGTCGAAACTGTTTTGTATCAGGCTGGGGATTGAAGTCATCGACATTGGC
AACAAGATATTTACTTCATGGAGATGTTCCTATCATCACAAATGCTGAAT
GTGCAAAAAGAAGGGACCAAACGAACAAATTTTGATGGGAAGTGAATTGA
AGATCCATCCAATGTTCAATAGACGTACATATGATAACGATATCGCACTC
ATCAAATTGAATAAACCAGCTGTTTTAACTGATAAAGTAAATATTGCGTG
TATTCCACCGAACGCTGTTTCTCCGAAACCAGTTCTCGCAGCAATCTTAT
CACACAAGCACAACGGATGCAACGCTCAAACTTGCGGTCATGTGACTATT
AGCCAATCACGTGTCATCAATGGTGTGACGTCACAAGAAGGACAATGGCC
TTGGCAAGCACAAATCAAACGGACAGTTTTTGGTGAGCAACACCATTGCG
GGGGTACGTTGATTCATCCGATGTATGTTTTGACTGCCGCTCATTGTTTG
ATGGACTATAGAGTACCGTTTCATTATCAAATCACACTTGGGAAACATGA
CCTACAAACATGCCTACAGCTAATTTTGCAATTTTCATTTTAGCAAAAAT
GAATCAAGTCAATTTAAATGGTGGAGTGACTGACAATATGTTATGTGCAG
GTGGAGATGGAAAAGCTAGTTGCCATGGCGACAGCGGCGGGCCGTTGGTT
TGCAGTGAAAGTGACGGTCGTTTTGTTGTACAAGGGGTGGTCAGCTGGGG
CCATCCACAATGTGCGGATGGTTACTATGGTGTTTTTGCACGTGTTGACC
AATATGGCGGATGGATAAGCTCAATTTTATATCCTGATAAATATTAAGTC
GAAACTGTTTTGTATCAGGCTGGGGATTGAAGTCATCGACATTGGCAACA
AGATATTTACTTCATGGAGATGTTCCTATCATCACAAATGCTGAATGTGC
AAAAAGAAGGGACCAAACGAACAAATTTTGATGGGAAGTGAATTGAAGAT
CCATCCAATGTTCAATAGACGTACATATGATAACGATATCGCACTCATCA
AATTGAATAAACCAGCTGTTTTAACTGATAAAGTAAATATTGCGTGTATT
CCACCGAACGCTGTTTCTCCGAAACCAGTTCTCGCAGCAATCTTATCACA
CAAGCACAACGGATGCAACGCTCAAACTTGCGGTCATGTGACTATTAGCC
AATCACGTGTCATCAATGGTGTGACGTCACAAGAAGGACAATGGCCTTGG
CAAGCACAAATCAAACGGACAGTTTTTGGTGAGCAACACCATTGCGGGGG
TACGTTGATTCATCCGATGTATGTTTTGACTGCCGCTCATTGTTTGATGG
ACTATAGAGTACCGTTTCATTATCAAATCACACTTGGGAAACATGACCTA
CAAACATGCCTACAGCTAATTTTGCAATTTTCATTTTAGCAAAAATGAAT
CAAGTCAATTTAAATGGTGGAGTGACTGACAATATGTTATGTGCAGGTGG
AGATGGAAAAGCTAGTTGCCATGGCGACAGCGGCGGGCCGTTGGTTTGCA
GTGAAAGTGACGGTCGTTTTGTTGTACAAGGGGTGGTCAGCTGGGGCCAT
CCACAATGTGCGGATGGTTACTATGGTGTTTTTGCACGTGTTGACCAATA
TGGCGGATGGATAAGCTCAATTTTATATCCTGATAAATATTAAGTCGAAA
CTGTTTTGTATCAGGCTGGGGATTGAAGTCATCGACATTGGCAACAAGAT
ATTTACTTCATGGAGATGTTCCTATCATCACAAATGCTGAATGTGCAAAA
AGAAGGGACCAAACGAACAAATTTTGATGGGAAGTGAATTGAAGATCCAT
CCAATGTTCAATAGACGTACATATGATAACGATATCGCACTCATCAAATT
GAATAAACCAGCTGTTTTAACTGATAAAGTAAATATTGCGTGTATTCCAC
CGAACGCTGTTTCTCCGAAACCAGTTCTCGCAGCAATCTTATCACACAAG
CACAACGGATGCAACGCTCAAACTTGCGGTCATGTGACTATTAGCCAATC
ACGTGTCATCAATGGTGTGACGTCACAAGAAGGACAATGGCCTTGGCAAG
CACAAATCAAACGGACAGTTTTTGGTGAGCAACACCATTGCGGGGGTACG
TTGATTCATCCGATGTATGTTTTGACTGCCGCTCATTGTTTGATGGACTA
TAGAGTACCGTTTCATTATCAAATCACACTTGGGAAACATGACCTACAAA
CATGCCTACAGCTAATTTTGCAATTTTCATTTTAGCAAAAATGAATCAAG
TCAATTTAAATGGTGGAGTGACTGACAATATGTTATGTGCAGGTGGAGAT
GGAAAAGCTAGTTGCCATGGCGACAGCGGCGGGCCGTTGGTTTGCAGTGA
AAGTGACGGTCGTTTTGTTGTACAAGGGGTGGTCAGCTGGGGCCATCCAC
AATGTGCGGATGGTTACTATGGTGTTTTTGCACGTGTTGACCAATATGGC
GGATGGATAAGCTCAATTTTATATCCTGATAAATATTAAGTCGAAACTGT
TTTGTATCAGGCTGGGGATTGAAGTCATCGACATTGGCAACAAGATATTT
ACTTCATGGAGATGTTCCTATCATCACAAATGCTGAATGTGCAAAAAGAA
GGGACCAAACGAACAAATTTTGATGGGAAGTGAATTGAAGATCCATCCAA
TGTTCAATAGACGTACATATGATAACGATATCGCACTCATCAAATTGAAT
AAACCAGCTGTTTTAACTGATAAAGTAAATATTGCGTGTATTCCACCGAA
CGCTGTTTCTCCGAAACCAGTTCTCGCAGCAATCTTATCACACAAGCACA
ACGGATGCAACGCTCAAACTTGCGGTCATGTGACTATTAGCCAATCACGT
GTCATCAATGGTGTGACGTCACAAGAAGGACAATGGCCTTGGCAAGCACA
AATCAAACGGACAGTTTTTGGTGAGCAACACCATTGCGGGGGTACGTTGA
TTCATCCGATGTATGTTTTGACTGCCGCTCATTGTTTGATGGACTATAGA
GTACCGTTTCATTATCAAATCACACTTGGGAAACATGACCTACAAACATG
CCTACAGCTAATTTTGCAATTTTCATTTTAGCAAAAATGAATCAAGTCAA
TTTAAATGGTGGAGTGACTGACAATATGTTATGTGCAGGTGGAGATGGAA
AAGCTAGTTGCCATGGCGACAGCGGCGGGCCGTTGGTTTGCAGTGAAAGT
GACGGTCGTTTTGTTGTACAAGGGGTGGTCAGCTGGGGCCATCCACAATG
TGCGGATGGTTACTATGGTGTTTTTGCACGTGTTGACCAATATGGCGGAT
GGATAAGCTCAATTTTATATCCTGATAAATATTAAGTCGAAACTGTTTTG
TATCAGGCTGGGGATTGAAGTCATCGACATTGGCAACAAGATATTTACTT
CATGGAGATGTTCCTATCATCACAAATGCTGAATGTGCAAAAAGAAGGGA
CCAAACGAACAAATTTTGATGGGAAGTGAATTGAAGATCCATCCAATGTT
CAATAGACGTACATATGATAACGATATCGCACTCATCAAATTGAATAAAC
CAGCTGTTTTAACTGATAAAGTAAATATTGCGTGTATTCCACCGAACGCT
GTTTCTCCGAAACCAGTTCTCGCAGCAATCTTATCACACAAGCACAACGG
ATGCAACGCTCAAACTTGCGGTCATGTGACTATTAGCCAATCACGTGTCA
TCAATGGTGTGACGTCACAAGAAGGACAATGGCCTTGGCAAGCACAAATC
AAACGGACAGTTTTTGGTGAGCAACACCATTGCGGGGGTACGTTGATTCA
TCCGATGTATGTTTTGACTGCCGCTCATTGTTTGATGGACTATAGAGTAC
CGTTTCATTATCAAATCACACTTGGGAAACATGACCTACAAACATGCCTA
CAGCTAATTTTGCAATTTTCATTTTAGCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030214XLOC_030214Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047445-exon-scaffold_128-1575043694:50105..50323TCONS_00047445-exon-scaffold_128-1575043694:50105..50323Clytia hemisphaericaexon
TCONS_00047445-exon-scaffold_128-1575043694:49721..49988TCONS_00047445-exon-scaffold_128-1575043694:49721..49988Clytia hemisphaericaexon
TCONS_00047445-exon-scaffold_128-1575043694:46571..46752TCONS_00047445-exon-scaffold_128-1575043694:46571..46752Clytia hemisphaericaexon
TCONS_00047445-exon-scaffold_128-1575043694:46180..46287TCONS_00047445-exon-scaffold_128-1575043694:46180..46287Clytia hemisphaericaexon
TCONS_00047445-exon-scaffold_128-1575043694:44158..44423TCONS_00047445-exon-scaffold_128-1575043694:44158..44423Clytia hemisphaericaexon
TCONS_00047445-exon-scaffold_128-1510915933:50105..50323TCONS_00047445-exon-scaffold_128-1510915933:50105..50323Clytia hemisphaericaexon
TCONS_00047445-exon-scaffold_128-1510915933:49721..49988TCONS_00047445-exon-scaffold_128-1510915933:49721..49988Clytia hemisphaericaexon
TCONS_00047445-exon-scaffold_128-1510915933:46571..46752TCONS_00047445-exon-scaffold_128-1510915933:46571..46752Clytia hemisphaericaexon
TCONS_00047445-exon-scaffold_128-1510915933:46180..46287TCONS_00047445-exon-scaffold_128-1510915933:46180..46287Clytia hemisphaericaexon
TCONS_00047445-exon-scaffold_128-1510915933:44158..44423TCONS_00047445-exon-scaffold_128-1510915933:44158..44423Clytia hemisphaericaexon
TCONS_00047445-exon-scaffold_128-1491911889:50105..50323TCONS_00047445-exon-scaffold_128-1491911889:50105..50323Clytia hemisphaericaexon
TCONS_00047445-exon-scaffold_128-1491911889:49721..49988TCONS_00047445-exon-scaffold_128-1491911889:49721..49988Clytia hemisphaericaexon
TCONS_00047445-exon-scaffold_128-1491911889:46571..46752TCONS_00047445-exon-scaffold_128-1491911889:46571..46752Clytia hemisphaericaexon
TCONS_00047445-exon-scaffold_128-1491911889:46180..46287TCONS_00047445-exon-scaffold_128-1491911889:46180..46287Clytia hemisphaericaexon
TCONS_00047445-exon-scaffold_128-1491911889:44158..44423TCONS_00047445-exon-scaffold_128-1491911889:44158..44423Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047445-proteinTCONS_00047445-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_128supercontigscaffold_128:44158..50323 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.023561	0.200783	0.135996	0.164073	0.0768015	0.0179235	0.244213	0.107745	0.0708273	8.67135	8.68209	5.1209	7.9322	2.18748	2.78217	31.6767	29.4092	10.7965	10.4119	6.70652	9.00168	25.5081	25.048	0.0874947	0.0311256	1.58171	1.77988
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001314Peptidase_S1A
IPR001254Trypsin_dom
IPR033116TRYPSIN_SER
IPR018114TRYPSIN_HIS
IPR009003Peptidase_S1_PA
Vocabulary: Molecular Function
TermDefinition
GO:0004252serine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004252 serine-type endopeptidase activity
Blast
[Close]
BLAST of TCONS_00047445 vs. Swiss-Prot (Human)
Match: PLMN (Plasminogen OS=Homo sapiens GN=PLG PE=1 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 3.273e-46
Identity = 103/244 (42.21%), Postives = 131/244 (53.69%), Query Frame = 3 
Query:  288 RVINGVTSQEGQWPWQAQIKRTVFGEQHHCGGTLIHPMYVLTAAHCLMDYRVPFHYQITLGKHDLQTKGPNEQILMGSELKIHPMFNRRTYDNDIALIKLNKPAVLTDKVNIACIPPNAVSPKPVLAGR-NCFVSGWGLKSSTLATRYLLHGDVPIITNAECAKKMNQVNLNGGVTDNMLCAG--GDGKASCHGDSGGPLVCSESDGRFVVQGVVSWGHPQCADGYYGVFARVDQYGGWISSIL 1010
            RV+ G  +    WPWQ  + RT FG  H CGGTLI P +VLTAAHCL     P  Y++ LG H      P+ Q +  S L + P         DIAL+KL+ PAV+TDKV  AC+P    SP  V+A R  CF++GWG    T     L    +P+I N  C +      LNG V    LCAG    G  SC GDSGGPLVC E D ++++QGV SWG         GV+ RV ++  WI  ++
Sbjct:  580 RVVGGCVAHPHSWPWQVSL-RTRFG-MHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGAHQEVNLEPHVQEIEVSRLFLEPT------RKDIALLKLSSPAVITDKVIPACLP----SPNYVVADRTECFITGWGETQGTFGAGLLKEAQLPVIENKVCNRYE---FLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKD-KYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVM 807
The following BLAST results are available for this feature:
BLAST of TCONS_00047445 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PLMN3.273e-4642.21Plasminogen OS=Homo sapiens GN=PLG PE=1 SV=2[more]
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